Spg010089 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg010089
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	DNA-directed RNA polymerase I subunit like
Location	scaffold7: 5342754 .. 5343248 (+)
RNA-Seq Expression	Spg010089
Synteny	Spg010089

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTAGGGTTTCTTAATCTCCCATGCCAATGGAATTCCTCATCTCTCCAACTTATCTCTTCAATTTCATCATCTTCTTCCCTCTCAACAAGATCTCTCCGCTGCAAATTCACTCTCCATCCCGCCTTTCTCAGACCGCAATCTCAAATTCATAGAAACCGCACGAGATTCACGGCGTTCTCCAGCAATAACGGCAATGGATTGGGCGGAAACATCAAGGAGAGAGAAGGAGAAAGAAATGGCGCGAAGGGCTCCAATGGCGGCGATGATTTGAAGAAAGAAAGAGGGCCGGTTTTCAACATCAAATGGGCTGAGCTTCTGATCGATCCGGATCCGGATAACATCTTGGCGGTTGCCCTGACTGGTTTGCTTGCTTGGGCAAGTGTTCAGGTTCTGTGGCAGTTGTTTTTCATCTCTCTGGCTATTTTAGTGGCGGCTCTTAAGTACTCTTTTATCGCTGCGCTTCTTATTTTCATTCTGATTACATTACTATAG

mRNA sequence

ATGCTAGGGTTTCTTAATCTCCCATGCCAATGGAATTCCTCATCTCTCCAACTTATCTCTTCAATTTCATCATCTTCTTCCCTCTCAACAAGATCTCTCCGCTGCAAATTCACTCTCCATCCCGCCTTTCTCAGACCGCAATCTCAAATTCATAGAAACCGCACGAGATTCACGGCGTTCTCCAGCAATAACGGCAATGGATTGGGCGGAAACATCAAGGAGAGAGAAGGAGAAAGAAATGGCGCGAAGGGCTCCAATGGCGGCGATGATTTGAAGAAAGAAAGAGGGCCGGTTTTCAACATCAAATGGGCTGAGCTTCTGATCGATCCGGATCCGGATAACATCTTGGCGGTTGCCCTGACTGGTTTGCTTGCTTGGGCAAGTGTTCAGGTTCTGTGGCAGTTGTTTTTCATCTCTCTGGCTATTTTAGTGGCGGCTCTTAAGTACTCTTTTATCGCTGCGCTTCTTATTTTCATTCTGATTACATTACTATAG

Coding sequence (CDS)

ATGCTAGGGTTTCTTAATCTCCCATGCCAATGGAATTCCTCATCTCTCCAACTTATCTCTTCAATTTCATCATCTTCTTCCCTCTCAACAAGATCTCTCCGCTGCAAATTCACTCTCCATCCCGCCTTTCTCAGACCGCAATCTCAAATTCATAGAAACCGCACGAGATTCACGGCGTTCTCCAGCAATAACGGCAATGGATTGGGCGGAAACATCAAGGAGAGAGAAGGAGAAAGAAATGGCGCGAAGGGCTCCAATGGCGGCGATGATTTGAAGAAAGAAAGAGGGCCGGTTTTCAACATCAAATGGGCTGAGCTTCTGATCGATCCGGATCCGGATAACATCTTGGCGGTTGCCCTGACTGGTTTGCTTGCTTGGGCAAGTGTTCAGGTTCTGTGGCAGTTGTTTTTCATCTCTCTGGCTATTTTAGTGGCGGCTCTTAAGTACTCTTTTATCGCTGCGCTTCTTATTTTCATTCTGATTACATTACTATAG

Protein sequence

MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRCKFTLHPAFLRPQSQIHRNRTRFTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL

Homology

[Close]

BLAST of Spg010089 vs. NCBI nr
Match: XP_022139143.1 (uncharacterized protein LOC111010120 [Momordica charantia])

HSP 1 Score: 238.4 bits (607), Expect = 4.3e-59
Identity = 139/168 (82.74%), Postives = 148/168 (88.10%), Query Frame = 0


Query: 1   MLGFLNLPCQWNSSSLQLISSI---SSSSSLSTRSL-RCKFTLHPAFLRPQSQIHRNRTR 60
           MLGF  LPCQW+S+S++L+SS    SSSS +S R++ R KFTLH A L  +SQI RNR R
Sbjct: 1   MLGFRTLPCQWSSASVRLLSSTPTPSSSSKISLRTVPRFKFTLHYALLMTRSQIPRNRAR 60

Query: 61  FTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120
           FTAFS N  NGLGGNIKEREGER GAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL
Sbjct: 61  FTAFSGNGDNGLGGNIKEREGERTGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120

Query: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 168

[Close]

BLAST of Spg010089 vs. NCBI nr
Match: XP_023549272.1 (uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 1.5e-51
Identity = 132/168 (78.57%), Postives = 138/168 (82.14%), Query Frame = 0


Query: 1   MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTR 60
           MLGFL +P QW  S    +SS SS  SLSTRS       KF LH +    +SQI   R R
Sbjct: 3   MLGFLTIPYQWKIS--PSLSSSSSPFSLSTRSSLSFPLFKFPLHYS----ESQIPGKRKR 62

Query: 61  FTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120
           FTA +SNN NGLGGNIKEREGERNGAKGSNGGDDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 63  FTALASNNDNGLGGNIKEREGERNGAKGSNGGDDLRKERGPVFNIKWAELLIDPDPDNIL 122

Query: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of Spg010089 vs. NCBI nr
Match: KAG7032002.1 (hypothetical protein SDJN02_06044, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 208.0 bits (528), Expect = 6.2e-50
Identity = 131/168 (77.98%), Postives = 137/168 (81.55%), Query Frame = 0


Query: 1   MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTR 60
           MLGFL +P QW  S    + S SS  SLSTRS       KF LH  +L  +SQI   R R
Sbjct: 3   MLGFLTIPYQWKIS--PSLPSSSSPFSLSTRSSLSFSLFKFPLH--YL--ESQIPGKRKR 62

Query: 61  FTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120
           FTA +SNN NGLGGNIKEREGERNGAKGSNG DDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 63  FTALASNNDNGLGGNIKEREGERNGAKGSNGDDDLRKERGPVFNIKWAELLIDPDPDNIL 122

Query: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of Spg010089 vs. NCBI nr
Match: XP_022957096.1 (uncharacterized protein LOC111458579 [Cucurbita moschata])

HSP 1 Score: 206.5 bits (524), Expect = 1.8e-49
Identity = 129/168 (76.79%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTR 60
           MLGFL +P QW  S    + S SS  SLSTRS       KF LH +    +SQI   R R
Sbjct: 3   MLGFLTIPYQWKIS--PSLPSSSSPFSLSTRSSLSFSLFKFPLHYS----ESQIPGKRKR 62

Query: 61  FTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120
           FTA +SNN NGLGGNIKEREGERNGAKGS G DDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 63  FTALASNNDNGLGGNIKEREGERNGAKGSKGDDDLRKERGPVFNIKWAELLIDPDPDNIL 122

Query: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of Spg010089 vs. NCBI nr
Match: XP_022993576.1 (uncharacterized protein LOC111489528 [Cucurbita maxima])

HSP 1 Score: 205.7 bits (522), Expect = 3.1e-49
Identity = 128/168 (76.19%), Postives = 134/168 (79.76%), Query Frame = 0


Query: 1   MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTR 60
           MLGFL +P QW  S    +SS SS   LSTRS       KF LH +    +SQI   R R
Sbjct: 3   MLGFLTIPYQWKIS--PSLSSSSSPFPLSTRSFLSFPLFKFPLHYS----ESQISGKRKR 62

Query: 61  FTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120
           F A +SNN NGLGGNIKEREGERNGAKGS G DDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 63  FAALASNNDNGLGGNIKEREGERNGAKGSKGDDDLRKERGPVFNIKWAELLIDPDPDNIL 122

Query: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of Spg010089 vs. ExPASy TrEMBL
Match: A0A6J1CF05 (uncharacterized protein LOC111010120 OS=Momordica charantia OX=3673 GN=LOC111010120 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.1e-59
Identity = 139/168 (82.74%), Postives = 148/168 (88.10%), Query Frame = 0


Query: 1   MLGFLNLPCQWNSSSLQLISSI---SSSSSLSTRSL-RCKFTLHPAFLRPQSQIHRNRTR 60
           MLGF  LPCQW+S+S++L+SS    SSSS +S R++ R KFTLH A L  +SQI RNR R
Sbjct: 1   MLGFRTLPCQWSSASVRLLSSTPTPSSSSKISLRTVPRFKFTLHYALLMTRSQIPRNRAR 60

Query: 61  FTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120
           FTAFS N  NGLGGNIKEREGER GAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL
Sbjct: 61  FTAFSGNGDNGLGGNIKEREGERTGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120

Query: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 168

[Close]

BLAST of Spg010089 vs. ExPASy TrEMBL
Match: A0A6J1GYA2 (uncharacterized protein LOC111458579 OS=Cucurbita moschata OX=3662 GN=LOC111458579 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.8e-50
Identity = 129/168 (76.79%), Postives = 135/168 (80.36%), Query Frame = 0


Query: 1   MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTR 60
           MLGFL +P QW  S    + S SS  SLSTRS       KF LH +    +SQI   R R
Sbjct: 3   MLGFLTIPYQWKIS--PSLPSSSSPFSLSTRSSLSFSLFKFPLHYS----ESQIPGKRKR 62

Query: 61  FTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120
           FTA +SNN NGLGGNIKEREGERNGAKGS G DDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 63  FTALASNNDNGLGGNIKEREGERNGAKGSKGDDDLRKERGPVFNIKWAELLIDPDPDNIL 122

Query: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of Spg010089 vs. ExPASy TrEMBL
Match: A0A6J1JWP5 (uncharacterized protein LOC111489528 OS=Cucurbita maxima OX=3661 GN=LOC111489528 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.5e-49
Identity = 128/168 (76.19%), Postives = 134/168 (79.76%), Query Frame = 0


Query: 1   MLGFLNLPCQWNSSSLQLISSISSSSSLSTRSLRC----KFTLHPAFLRPQSQIHRNRTR 60
           MLGFL +P QW  S    +SS SS   LSTRS       KF LH +    +SQI   R R
Sbjct: 3   MLGFLTIPYQWKIS--PSLSSSSSPFPLSTRSFLSFPLFKFPLHYS----ESQISGKRKR 62

Query: 61  FTAFSSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNIL 120
           F A +SNN NGLGGNIKEREGERNGAKGS G DDL+KERGPVFNIKWAELLIDPDPDNIL
Sbjct: 63  FAALASNNDNGLGGNIKEREGERNGAKGSKGDDDLRKERGPVFNIKWAELLIDPDPDNIL 122

Query: 121 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 123 AVALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of Spg010089 vs. ExPASy TrEMBL
Match: A0A5D3CD16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002130 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.6e-46
Identity = 125/166 (75.30%), Postives = 130/166 (78.31%), Query Frame = 0


Query: 1   MLGFLNLPCQWN-SSSLQLISSISSSSSLSTRSLRCKFTLHPAFLRPQSQIHRNRTRFTA 60
           MLGFL +P Q   S SL  + SISS SSL       KF LH  F   +  I  NR RFTA
Sbjct: 1   MLGFLTIPHQLKISPSLASLPSISSPSSLFLPLY--KFPLHHTFFNSKFLISSNRRRFTA 60

Query: 61  FSSNNGNGLGGNIKEREGERNGAK-GSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAV 120
            +SN     GG+IKEREGERNGAK  SNGGDDLKKERGPVFNIKWAELLIDPDPDNILAV
Sbjct: 61  SASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAV 120

Query: 121 ALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           ALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 121 ALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 164

[Close]

BLAST of Spg010089 vs. ExPASy TrEMBL
Match: A0A1S3BFX0 (uncharacterized protein LOC103489407 OS=Cucumis melo OX=3656 GN=LOC103489407 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 2.6e-46
Identity = 125/166 (75.30%), Postives = 130/166 (78.31%), Query Frame = 0


Query: 1   MLGFLNLPCQWN-SSSLQLISSISSSSSLSTRSLRCKFTLHPAFLRPQSQIHRNRTRFTA 60
           MLGFL +P Q   S SL  + SISS SSL       KF LH  F   +  I  NR RFTA
Sbjct: 23  MLGFLTIPHQLKISPSLASLPSISSPSSLFLPLY--KFPLHHTFFNSKFLISSNRRRFTA 82

Query: 61  FSSNNGNGLGGNIKEREGERNGAK-GSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAV 120
            +SN     GG+IKEREGERNGAK  SNGGDDLKKERGPVFNIKWAELLIDPDPDNILAV
Sbjct: 83  SASNKNTEFGGSIKEREGERNGAKSSSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAV 142

Query: 121 ALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
           ALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL
Sbjct: 143 ALTGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 186

[Close]

BLAST of Spg010089 vs. TAIR 10
Match: AT4G40045.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 85.9 bits (211), Expect = 3.3e-17
Identity = 60/104 (57.69%), Postives = 74/104 (71.15%), Query Frame = 0


Query: 61  SSNNGNGLGGNIKEREGERNGAKGSNGGDDLKKERGPVFNIKWAELLIDPDPDNILAVAL 120
           ++ NGN    + KE  G  N    ++ G+  KK++   F+ KW ELL +PD DN +AV L
Sbjct: 41  NAQNGN---DSAKESSGGGNRPVTNDDGNGSKKDQFAGFSFKWGELL-NPDQDNFVAVGL 100

Query: 121 TGLLAWASVQVLWQLFFISLAILVAALKYSFIAALLIFILITLL 165
            G+L WAS+QVL QLFFIS AILVAALKYSFIAALLIFIL+TLL
Sbjct: 101 AGVLTWASLQVLSQLFFISFAILVAALKYSFIAALLIFILVTLL 140

The following BLAST results are available for this feature:

BLAST of Spg010089 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022139143.1	4.3e-59	82.74	uncharacterized protein LOC111010120 [Momordica charantia]	[more]
XP_023549272.1	1.5e-51	78.57	uncharacterized protein LOC111807677 [Cucurbita pepo subsp. pepo]	[more]
KAG7032002.1	6.2e-50	77.98	hypothetical protein SDJN02_06044, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022957096.1	1.8e-49	76.79	uncharacterized protein LOC111458579 [Cucurbita moschata]	[more]
XP_022993576.1	3.1e-49	76.19	uncharacterized protein LOC111489528 [Cucurbita maxima]	[more]

BLAST of Spg010089 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg010089 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CF05	2.1e-59	82.74	uncharacterized protein LOC111010120 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1GYA2	8.8e-50	76.79	uncharacterized protein LOC111458579 OS=Cucurbita moschata OX=3662 GN=LOC1114585...	[more]
A0A6J1JWP5	1.5e-49	76.19	uncharacterized protein LOC111489528 OS=Cucurbita maxima OX=3661 GN=LOC111489528...	[more]
A0A5D3CD16	2.6e-46	75.30	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFX0	2.6e-46	75.30	uncharacterized protein LOC103489407 OS=Cucumis melo OX=3656 GN=LOC103489407 PE=...	[more]

BLAST of Spg010089 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G40045.1	3.3e-17	57.69	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..91
None	No IPR available	PANTHER	PTHR36789	TRANSMEMBRANE PROTEIN	coord: 28..164

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg010089.1	Spg010089.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane