Spg010085 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATTTGATCAAGAGACAGCCGAGGAGAACCAAGAAATCGGCCGCCGATTTCAAAGTCGTGTACATTTCCAGTCCGATGAAGGTGAAAACCAGCGCCTCCAAGTTCCGATCTCTCGTCCAGAAACTCACCGGTCAGGACTCCGACGCCGAGAGGTTCATGGAACTCATCGGCGCCGCCGCCGGTGGTCGGAATGATAATCTCCAATCGTCGGCGTCGGCGTTCCTCGATTACCAACTCCTTGGCGACGAAGATTTAAGCGATCGCGATCATCGTCTTGTGGCGGGAAAGATGGAAACGGCGGCGTATCAGTCGTCGGTGGCTCCGGCGGAGGATTTGGTTTTGCAGAACTTCGATGCGAGTTTTGCGGAAATGTTCCATGGCTTTTTGCATGAATCTTCTACACAGTCTGAGATGCCTGCAGGTTTAAGTGCACTACTGTAA ATGGATTTGATCAAGAGACAGCCGAGGAGAACCAAGAAATCGGCCGCCGATTTCAAAGTCGTGTACATTTCCAGTCCGATGAAGGTGAAAACCAGCGCCTCCAAGTTCCGATCTCTCGTCCAGAAACTCACCGGTCAGGACTCCGACGCCGAGAGGTTCATGGAACTCATCGGCGCCGCCGCCGGTGGTCGGAATGATAATCTCCAATCGTCGGCGTCGGCGTTCCTCGATTACCAACTCCTTGGCGACGAAGATTTAAGCGATCGCGATCATCGTCTTGTGGCGGGAAAGATGGAAACGGCGGCGTATCAGTCGTCGGTGGCTCCGGCGGAGGATTTGGTTTTGCAGAACTTCGATGCGAGTTTTGCGGAAATGTTCCATGGCTTTTTGCATGAATCTTCTACACAGTCTGAGATGCCTGCAGGTTTAAGTGCACTACTGTAA ATGGATTTGATCAAGAGACAGCCGAGGAGAACCAAGAAATCGGCCGCCGATTTCAAAGTCGTGTACATTTCCAGTCCGATGAAGGTGAAAACCAGCGCCTCCAAGTTCCGATCTCTCGTCCAGAAACTCACCGGTCAGGACTCCGACGCCGAGAGGTTCATGGAACTCATCGGCGCCGCCGCCGGTGGTCGGAATGATAATCTCCAATCGTCGGCGTCGGCGTTCCTCGATTACCAACTCCTTGGCGACGAAGATTTAAGCGATCGCGATCATCGTCTTGTGGCGGGAAAGATGGAAACGGCGGCGTATCAGTCGTCGGTGGCTCCGGCGGAGGATTTGGTTTTGCAGAACTTCGATGCGAGTTTTGCGGAAATGTTCCATGGCTTTTTGCATGAATCTTCTACACAGTCTGAGATGCCTGCAGGTTTAAGTGCACTACTGTAA MDLIKRQPRRTKKSAADFKVVYISSPMKVKTSASKFRSLVQKLTGQDSDAERFMELIGAAAGGRNDNLQSSASAFLDYQLLGDEDLSDRDHRLVAGKMETAAYQSSVAPAEDLVLQNFDASFAEMFHGFLHESSTQSEMPAGLSALL Homology
BLAST of Spg010085 vs. NCBI nr
Match: XP_023542375.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 207.2 bits (526), Expect = 9.5e-50 Identity = 121/153 (79.08%), Postives = 132/153 (86.27%), Query Frame = 0
BLAST of Spg010085 vs. NCBI nr
Match: XP_022966872.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 207.2 bits (526), Expect = 9.5e-50 Identity = 121/153 (79.08%), Postives = 132/153 (86.27%), Query Frame = 0
BLAST of Spg010085 vs. NCBI nr
Match: KAG6573793.1 (Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 204.9 bits (520), Expect = 4.7e-49 Identity = 119/153 (77.78%), Postives = 132/153 (86.27%), Query Frame = 0
BLAST of Spg010085 vs. NCBI nr
Match: XP_022945563.1 (sigma factor binding protein 1, chloroplastic-like [Cucurbita moschata] >KAG7012870.1 Sigma factor binding protein 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 204.9 bits (520), Expect = 4.7e-49 Identity = 119/153 (77.78%), Postives = 132/153 (86.27%), Query Frame = 0
BLAST of Spg010085 vs. NCBI nr
Match: XP_022139181.1 (uncharacterized protein LOC111010149 [Momordica charantia]) HSP 1 Score: 188.3 bits (477), Expect = 4.6e-44 Identity = 109/154 (70.78%), Postives = 131/154 (85.06%), Query Frame = 0
BLAST of Spg010085 vs. ExPASy Swiss-Prot
Match: Q9LDH1 (Sigma factor binding protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB1 PE=1 SV=1) HSP 1 Score: 48.5 bits (114), Expect = 7.4e-05 Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 0
BLAST of Spg010085 vs. ExPASy Swiss-Prot
Match: O80669 (Sigma factor binding protein 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SIB2 PE=1 SV=1) HSP 1 Score: 45.8 bits (107), Expect = 4.8e-04 Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 0
BLAST of Spg010085 vs. ExPASy TrEMBL
Match: A0A6J1HP65 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111466446 PE=4 SV=1) HSP 1 Score: 207.2 bits (526), Expect = 4.6e-50 Identity = 121/153 (79.08%), Postives = 132/153 (86.27%), Query Frame = 0
BLAST of Spg010085 vs. ExPASy TrEMBL
Match: A0A6J1G190 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111449759 PE=4 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 2.3e-49 Identity = 119/153 (77.78%), Postives = 132/153 (86.27%), Query Frame = 0
BLAST of Spg010085 vs. ExPASy TrEMBL
Match: A0A6J1CBX0 (uncharacterized protein LOC111010149 OS=Momordica charantia OX=3673 GN=LOC111010149 PE=4 SV=1) HSP 1 Score: 188.3 bits (477), Expect = 2.2e-44 Identity = 109/154 (70.78%), Postives = 131/154 (85.06%), Query Frame = 0
BLAST of Spg010085 vs. ExPASy TrEMBL
Match: A0A6J1GZT9 (sigma factor binding protein 1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111458651 PE=4 SV=1) HSP 1 Score: 177.2 bits (448), Expect = 5.1e-41 Identity = 102/131 (77.86%), Postives = 110/131 (83.97%), Query Frame = 0
BLAST of Spg010085 vs. ExPASy TrEMBL
Match: A0A6J1JD32 (uncharacterized protein LOC111483942 OS=Cucurbita maxima OX=3661 GN=LOC111483942 PE=4 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 6.7e-41 Identity = 101/131 (77.10%), Postives = 113/131 (86.26%), Query Frame = 0
BLAST of Spg010085 vs. TAIR 10
Match: AT3G56710.1 (sigma factor binding protein 1 ) HSP 1 Score: 48.5 bits (114), Expect = 5.3e-06 Identity = 24/43 (55.81%), Postives = 33/43 (76.74%), Query Frame = 0
BLAST of Spg010085 vs. TAIR 10
Match: AT2G41180.1 (VQ motif-containing protein ) HSP 1 Score: 45.8 bits (107), Expect = 3.4e-05 Identity = 23/43 (53.49%), Postives = 32/43 (74.42%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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