Spg009918 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg009918
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribulose bisphosphate carboxylase small subunit
Location	scaffold7: 4173153 .. 4174534 (+)
RNA-Seq Expression	Spg009918
Synteny	Spg009918

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAGGGTGACATGATCTTAAATCCAAGTGGTTTTTTACCAGCTAAAATTACGACCACTAAATGGGTTTGCGTGTGGATAAAACGCCAAGAGGTGGAGAAGCGTTGAAGGGCAAGGGAGTCGAGCCAGTTAAGGCCTTATAAATACACCACCATTTCACAGTGCAAGGCCTCTCAAACTCAGCCAGCAAGAGCCTTCAACTACTAACAAAAGCAAAAAAGCAAAAAAAAAAAAAAACAGAGGCTCCAATGGCTTCCATTGTCTCATCCGCCGCTGTTGCCTCCGTGAACCGGGCCTCCCCTGCCCAAGCTAGCATGGTGGCACCCTTCACTGGCCTGAAATCCACCGCCGGCTTCCCCATCACCCGCAAGACCAACGACATCACCACTCTCGCCAGCAACGGTGGAAGAGTTCAGTGCATGAAGGTATAAATCATCACATGCAGTGGGTAGGGTAATTGTATAATTTCATGGACATGGATTAATTAATTATTATAATAATTGTTGTTTTTTTATTTGTGATGTGTAAAAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTTTGTCGTACCTGCCTGATCTCAGCATGGAGCAATTGGCTAAGCAAATTGATTACCTACTCAAGAGTCGGTGGGTTGCTTGCCTTGAGTTCGAAGTGGAGGTAATGTTGAATTAAATAGAGAGTAAAGGAAGAAATTGGGAATTAGTTTTTTTTGTTGTGTTTGAGAAAGTGTGTATTAGTATTGATGGAATTGTTGAATGAATGGCAATGGAATATTATGTACTGCAGAAGGGATGGGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCCATGTACGGGTGCACCGATGCCATTCAGGTGTTGAAGGAGATCGAGGAGTGCAAGAAGGAATACCCCCAAGCATGGATCAGGGTCATCGGATTCGACAACGTCCGCCAAGTCCAGTGCATCAGTTTCATCGTCTACAAGCCCCCGCACATCCCCTGCTGATTTCTTTAATAATTCCCATGCGGCTTTCTTTGGGCCGCTCCCGCTTCCGCTTCCGCTTCAGTTGGGTTTCAACAAATTTCCATTTTTTTTCCTTTTTCCTTTTACGTTTTGGTCTGTCTGTCTCTTCAACCTATGTTTATTTCCCAGACTTTCCAATTCCAATTGGAATAAATGATGATGCTTTGATTTGTTGTTAAATATCCTATCCATTTCTCTATGCACCATCTTAATTTCTATTTAACTTTCTGCTCTCCTCCCATTCTCTGCAATTCTAACTTAATCGCCATGCAATTTCTTCTCTCTCTAATCTCTATCTTATTGTTCGACATTCATTCACGATAACGATAAGG

mRNA sequence

ATGGCTTCCATTGTCTCATCCGCCGCTGTTGCCTCCGTGAACCGGGCCTCCCCTGCCCAAGCTAGCATGGTGGCACCCTTCACTGGCCTGAAATCCACCGCCGGCTTCCCCATCACCCGCAAGACCAACGACATCACCACTCTCGCCAGCAACGGTGGAAGAGTTCAGTGCATGAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTTTGTCGTACCTGCCTGATCTCAGCATGGAGCAATTGGCTAAGCAAATTGATTACCTACTCAAGAGTCGGTGGGTTGCTTGCCTTGAGTTCGAAGTGGAGAAGGGATGGGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCCATGTACGGGTGCACCGATGCCATTCAGGTGTTGAAGGAGATCGAGGAGTGCAAGAAGGAATACCCCCAAGCATGGATCAGGGTCATCGGATTCGACAACGTCCGCCAAGTCCAGTGCATCAGTTTCATCGTCTACAAGCCCCCGCACATCCCCTGCTGA

Coding sequence (CDS)

ATGGCTTCCATTGTCTCATCCGCCGCTGTTGCCTCCGTGAACCGGGCCTCCCCTGCCCAAGCTAGCATGGTGGCACCCTTCACTGGCCTGAAATCCACCGCCGGCTTCCCCATCACCCGCAAGACCAACGACATCACCACTCTCGCCAGCAACGGTGGAAGAGTTCAGTGCATGAAGGTGTGGCCACCACTTGGATTGAAGAAGTTCGAGACTTTGTCGTACCTGCCTGATCTCAGCATGGAGCAATTGGCTAAGCAAATTGATTACCTACTCAAGAGTCGGTGGGTTGCTTGCCTTGAGTTCGAAGTGGAGAAGGGATGGGTGTACCGTGAGAACCACAGGTCACCAGGATACTACGATGGACGCTACTGGACCATGTGGAAGCTGCCCATGTACGGGTGCACCGATGCCATTCAGGTGTTGAAGGAGATCGAGGAGTGCAAGAAGGAATACCCCCAAGCATGGATCAGGGTCATCGGATTCGACAACGTCCGCCAAGTCCAGTGCATCAGTTTCATCGTCTACAAGCCCCCGCACATCCCCTGCTGA

Protein sequence

MASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMKVWPPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYDGRYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPPHIPC

Homology

[Close]

BLAST of Spg009918 vs. NCBI nr
Match: AFO67218.1 (putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Aralia elata])

HSP 1 Score: 318.2 bits (814), Expect = 4.7e-83
Identity = 145/179 (81.01%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMKVW 61
           +S++SSA+VA+V+RA+PAQASMVAPFTGLKSTA FP+TRK NDIT+L SNGGRVQCMKVW
Sbjct: 3   SSVISSASVAAVSRAAPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKVW 62

Query: 62  PPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYDG 121
           PPLGLKKFETLSYLP L+ E+LAK++DYLL+S WV CLEFE+E GWVYRENHRSPGYYDG
Sbjct: 63  PPLGLKKFETLSYLPPLTNEELAKEVDYLLRSGWVPCLEFELEHGWVYRENHRSPGYYDG 122

Query: 122 RYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPPHI 181
           RYWTMWKLPM+GCTD+ QVL E+EECKKEYP A+IR+IGFDNVRQVQCISFI +KPP I
Sbjct: 123 RYWTMWKLPMFGCTDSSQVLNEVEECKKEYPNAFIRIIGFDNVRQVQCISFIAFKPPQI 181

[Close]

BLAST of Spg009918 vs. NCBI nr
Match: XP_038892640.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 317.8 bits (813), Expect = 6.2e-83
Identity = 151/177 (85.31%), Postives = 162/177 (91.53%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMKVW 61
           +SIVSSAAVASVNRASPAQASMVAPFTGLKS A FPITRK NDITTLASNGGRVQCMKVW
Sbjct: 3   SSIVSSAAVASVNRASPAQASMVAPFTGLKSAAAFPITRKNNDITTLASNGGRVQCMKVW 62

Query: 62  PPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYDG 121
           PPLGLKKFETLSYLPDL   QLAK+++YLL+  WV CLEF++  G+VYRENHRSPGYYDG
Sbjct: 63  PPLGLKKFETLSYLPDLDEAQLAKEVEYLLRKGWVPCLEFDIHDGFVYRENHRSPGYYDG 122

Query: 122 RYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPP 179
           RYWTMWKLPM+GCTDA QV+KEI E KKEYP A+IRVIGFDNVRQVQCISFIVYKPP
Sbjct: 123 RYWTMWKLPMFGCTDAAQVIKEINEAKKEYPDAFIRVIGFDNVRQVQCISFIVYKPP 179

[Close]

BLAST of Spg009918 vs. NCBI nr
Match: WP_082711130.1 (MULTISPECIES: ribulose-1,5-bisphosphate carboxylase small subunit [Bacteria])

HSP 1 Score: 316.6 bits (810), Expect = 1.4e-82
Identity = 151/177 (85.31%), Postives = 162/177 (91.53%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMKVW 61
           +SIVSSAAVASVNRASPAQASMVAPFTGLKS A FPITRK NDITTLASNGGRVQCMKVW
Sbjct: 3   SSIVSSAAVASVNRASPAQASMVAPFTGLKSGAAFPITRKNNDITTLASNGGRVQCMKVW 62

Query: 62  PPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYDG 121
           PPLGLKKFETLSYLPDL   QLAK+++YLL+  WV CLEF+V  G+VYRENHRSPGYYDG
Sbjct: 63  PPLGLKKFETLSYLPDLDQTQLAKEVEYLLRKGWVPCLEFDVHDGFVYRENHRSPGYYDG 122

Query: 122 RYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPP 179
           RYWTMWKLPM+GCTDA QV++EIEE KK YP A+IRVIGFDNVRQVQCISFIVYKPP
Sbjct: 123 RYWTMWKLPMFGCTDAAQVIQEIEEAKKHYPDAFIRVIGFDNVRQVQCISFIVYKPP 179

[Close]

BLAST of Spg009918 vs. NCBI nr
Match: XP_022957356.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita moschata] >KAG6601287.1 Ribulose bisphosphate carboxylase small chain, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032075.1 Ribulose bisphosphate carboxylase small chain, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 315.5 bits (807), Expect = 3.1e-82
Identity = 151/177 (85.31%), Postives = 162/177 (91.53%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMKVW 61
           +SIVSSAAVASVNRASPAQASMVAPF GLKSTA FP+TRK NDITTLASNG RV+CMKVW
Sbjct: 3   SSIVSSAAVASVNRASPAQASMVAPFVGLKSTAAFPVTRKNNDITTLASNGSRVKCMKVW 62

Query: 62  PPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYDG 121
           PPLGLKKFETLSYLPDL+ EQL K+I YLL+S WV C+EFE+EKG+VYRENHRSPGYYDG
Sbjct: 63  PPLGLKKFETLSYLPDLTSEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYYDG 122

Query: 122 RYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPP 179
           RYWTMWKLPM+GCTD  QV  EIEE KKEYP A+IRVIGFDNVRQVQCISFIVYKPP
Sbjct: 123 RYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPP 179

[Close]

BLAST of Spg009918 vs. NCBI nr
Match: XP_022945823.1 (ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita moschata] >KAG6573959.1 Ribulose bisphosphate carboxylase small chain, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 314.7 bits (805), Expect = 5.2e-82
Identity = 153/178 (85.96%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 1   MASIVSS-AAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMK 60
           MASIVSS AAVASVNRASPAQASMVAP+TGLKSTAGFP+TRK NDITTLASNG RV+CMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDL+ EQL K+I YLL+S WV C+EFE+EKG+VYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKP 178
           DGRYWTMWKLPM+GCTD  QV  EIEE KKEYP A+IRVIGFDNVRQVQCISFIVYKP
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 178

[Close]

BLAST of Spg009918 vs. ExPASy Swiss-Prot
Match: P08474 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativus OX=3659 GN=RBCS PE=2 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 6.0e-81
Identity = 143/177 (80.79%), Postives = 163/177 (92.09%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTN-DITTLASNGGRVQCMKV 61
           +SI+SSAAVASVN ASPAQASMVAPFTGLKS+AGFPITRK N DITTLASN G+VQCMKV
Sbjct: 3   SSILSSAAVASVNSASPAQASMVAPFTGLKSSAGFPITRKNNVDITTLASNAGKVQCMKV 62

Query: 62  WPPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYD 121
           WPPLGL+KFETLSYLPD+S EQL+K+ DYLL++ WV C+EF++  G+VYRENHRSPG+YD
Sbjct: 63  WPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYD 122

Query: 122 GRYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKP 178
           GRYWTMWKLPM+GCTD+ QV++EIEE KKEYP A+IRVIGFDNVRQVQCISFI YKP
Sbjct: 123 GRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179

[Close]

BLAST of Spg009918 vs. ExPASy Swiss-Prot
Match: Q39746 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 4 OS=Flaveria pringlei OX=4226 GN=RBCS4 PE=2 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.3e-78
Identity = 136/177 (76.84%), Postives = 159/177 (89.83%), Query Frame = 0


Query: 1   MASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMKV 60
           MASI  S+ VA+V+RA+PAQA+MVAPFTGLKS A FP T+K ND +TL SNGGRVQCMKV
Sbjct: 1   MASI--SSTVATVSRAAPAQANMVAPFTGLKSNAAFPATKKANDFSTLPSNGGRVQCMKV 60

Query: 61  WPPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYD 120
           WPPLG KK+ETLSYLP+L+  QLAK++DYLL+++WV CLEFE+E G+VYREN RSPGYYD
Sbjct: 61  WPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYD 120

Query: 121 GRYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKP 178
           GRYWTMWKLPM+GCTD+ QV+KE++ECKKEYPQAWIR+IGFDNVRQVQCISFI  KP
Sbjct: 121 GRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 175

[Close]

BLAST of Spg009918 vs. ExPASy Swiss-Prot
Match: P24007 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Pyrus pyrifolia OX=3767 GN=RBCS PE=2 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 4.8e-78
Identity = 135/178 (75.84%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 2   ASIVSSAAVASV--NRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMK 61
           +S++SS  VA+V  +R +PAQA MVAPF GLKS++ FP+TRK+NDIT++ASNGGRVQCM+
Sbjct: 3   SSMISSGTVATVSADRPAPAQARMVAPFNGLKSSSAFPVTRKSNDITSIASNGGRVQCMQ 62

Query: 62  VWPPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYY 121
           VWPPLGLKKFETLSYLP LS E LAK++DYLL+  WV CLEFE+E G+VYRENHRSPGYY
Sbjct: 63  VWPPLGLKKFETLSYLPPLSSESLAKEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYY 122

Query: 122 DGRYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKP 178
           DGRYWTMWKLPM+GCTD+ QVLKE+EE KK YPQ++IR+IGFDNVRQVQCISFI YKP
Sbjct: 123 DGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180

[Close]

BLAST of Spg009918 vs. ExPASy Swiss-Prot
Match: Q39744 (Ribulose bisphosphate carboxylase small subunit, chloroplastic 2 OS=Flaveria pringlei OX=4226 GN=RBCS2 PE=2 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 8.1e-78
Identity = 134/177 (75.71%), Postives = 158/177 (89.27%), Query Frame = 0


Query: 1   MASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMKV 60
           MASI  S+ VA+V+RA+PAQA+MVAPFTGLKS   FP T+K ND +TL SNGGRVQCMKV
Sbjct: 1   MASI--SSTVATVSRAAPAQANMVAPFTGLKSNVAFPATKKANDFSTLPSNGGRVQCMKV 60

Query: 61  WPPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYD 120
           WPPLG K++ETLSYLP+L+  QLAK++DYLL+++WV CLEFE+E G+VYREN RSPGYYD
Sbjct: 61  WPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYD 120

Query: 121 GRYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKP 178
           GRYWTMWKLPM+GCTD+ QV+KE++ECKKEYPQAWIR+IGFDNVRQVQCISFI  KP
Sbjct: 121 GRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 175

[Close]

BLAST of Spg009918 vs. ExPASy Swiss-Prot
Match: Q02980 (Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Malus sp. OX=3751 GN=RBCS PE=2 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.1e-77
Identity = 135/178 (75.84%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 2   ASIVSSAAVASV--NRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMK 61
           +S++SS  VA+V  +R +PAQA MVAPFTGLKS++  P+TRK+NDIT++ASNGGRVQCM+
Sbjct: 3   SSMISSGTVATVSADRPAPAQARMVAPFTGLKSSSASPVTRKSNDITSIASNGGRVQCMQ 62

Query: 62  VWPPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYY 121
           VWPPLGLKKFETLSYLP LS E LAK++DYLL+  WV CLEFE+E G+VYRENHRSPGYY
Sbjct: 63  VWPPLGLKKFETLSYLPPLSTESLAKEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYY 122

Query: 122 DGRYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKP 178
           DGRYWTMWKLPM+GCTD+ QVLKE+EE KK YPQ++IR+IGFDNVRQVQCISFI YKP
Sbjct: 123 DGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKP 180

[Close]

BLAST of Spg009918 vs. ExPASy TrEMBL
Match: I7DCG5 (Ribulose bisphosphate carboxylase small subunit OS=Aralia elata OX=82095 PE=2 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.3e-83
Identity = 145/179 (81.01%), Postives = 166/179 (92.74%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMKVW 61
           +S++SSA+VA+V+RA+PAQASMVAPFTGLKSTA FP+TRK NDIT+L SNGGRVQCMKVW
Sbjct: 3   SSVISSASVAAVSRAAPAQASMVAPFTGLKSTAAFPVTRKVNDITSLPSNGGRVQCMKVW 62

Query: 62  PPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYDG 121
           PPLGLKKFETLSYLP L+ E+LAK++DYLL+S WV CLEFE+E GWVYRENHRSPGYYDG
Sbjct: 63  PPLGLKKFETLSYLPPLTNEELAKEVDYLLRSGWVPCLEFELEHGWVYRENHRSPGYYDG 122

Query: 122 RYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPPHI 181
           RYWTMWKLPM+GCTD+ QVL E+EECKKEYP A+IR+IGFDNVRQVQCISFI +KPP I
Sbjct: 123 RYWTMWKLPMFGCTDSSQVLNEVEECKKEYPNAFIRIIGFDNVRQVQCISFIAFKPPQI 181

[Close]

BLAST of Spg009918 vs. ExPASy TrEMBL
Match: A0A6J1GZ01 (Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN=LOC111458779 PE=3 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.5e-82
Identity = 151/177 (85.31%), Postives = 162/177 (91.53%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMKVW 61
           +SIVSSAAVASVNRASPAQASMVAPF GLKSTA FP+TRK NDITTLASNG RV+CMKVW
Sbjct: 3   SSIVSSAAVASVNRASPAQASMVAPFVGLKSTAAFPVTRKNNDITTLASNGSRVKCMKVW 62

Query: 62  PPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYDG 121
           PPLGLKKFETLSYLPDL+ EQL K+I YLL+S WV C+EFE+EKG+VYRENHRSPGYYDG
Sbjct: 63  PPLGLKKFETLSYLPDLTSEQLLKEIAYLLRSGWVPCIEFELEKGFVYRENHRSPGYYDG 122

Query: 122 RYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPP 179
           RYWTMWKLPM+GCTD  QV  EIEE KKEYP A+IRVIGFDNVRQVQCISFIVYKPP
Sbjct: 123 RYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKPP 179

[Close]

BLAST of Spg009918 vs. ExPASy TrEMBL
Match: A0A6J1G227 (Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN=LOC111449952 PE=3 SV=1)

HSP 1 Score: 314.7 bits (805), Expect = 2.5e-82
Identity = 153/178 (85.96%), Postives = 164/178 (92.13%), Query Frame = 0


Query: 1   MASIVSS-AAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMK 60
           MASIVSS AAVASVNRASPAQASMVAP+TGLKSTAGFP+TRK NDITTLASNG RV+CMK
Sbjct: 1   MASIVSSAAAVASVNRASPAQASMVAPYTGLKSTAGFPVTRKNNDITTLASNGSRVRCMK 60

Query: 61  VWPPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYY 120
           VWPPLGLKKFETLSYLPDL+ EQL K+I YLL+S WV C+EFE+EKG+VYRENHRSPGYY
Sbjct: 61  VWPPLGLKKFETLSYLPDLTSEQLLKEIGYLLRSGWVPCIEFELEKGFVYRENHRSPGYY 120

Query: 121 DGRYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKP 178
           DGRYWTMWKLPM+GCTD  QV  EIEE KKEYP A+IRVIGFDNVRQVQCISFIVYKP
Sbjct: 121 DGRYWTMWKLPMFGCTDPAQVAAEIEEAKKEYPNAFIRVIGFDNVRQVQCISFIVYKP 178

[Close]

BLAST of Spg009918 vs. ExPASy TrEMBL
Match: A0A5D3CCQ3 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001010 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 7.4e-82
Identity = 145/177 (81.92%), Postives = 161/177 (90.96%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMKVW 61
           +SI+SSAAVASVN ASPAQASMVAPFTGLKS A FP+TRK NDITTLASNGGRVQCMKVW
Sbjct: 3   SSILSSAAVASVNSASPAQASMVAPFTGLKSAAAFPVTRKNNDITTLASNGGRVQCMKVW 62

Query: 62  PPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYDG 121
           PPLGLKKFETLSYLPD+S EQL K++DYLL+  W+ C+EF++  G+VYRENHRSPGYYDG
Sbjct: 63  PPLGLKKFETLSYLPDMSNEQLGKEVDYLLRKGWIPCIEFDIHSGFVYRENHRSPGYYDG 122

Query: 122 RYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPP 179
           RYWTMWKLPM+GCTD+ QV+ EIEE KKEYP A+IRVIGFDNVRQVQCISFI YKPP
Sbjct: 123 RYWTMWKLPMFGCTDSSQVVNEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPP 179

[Close]

BLAST of Spg009918 vs. ExPASy TrEMBL
Match: A0A1S3BG44 (Ribulose bisphosphate carboxylase small subunit OS=Cucumis melo OX=3656 GN=LOC103489286 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 7.4e-82
Identity = 145/177 (81.92%), Postives = 161/177 (90.96%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTNDITTLASNGGRVQCMKVW 61
           +SI+SSAAVASVN ASPAQASMVAPFTGLKS A FP+TRK NDITTLASNGGRVQCMKVW
Sbjct: 3   SSILSSAAVASVNSASPAQASMVAPFTGLKSAAAFPVTRKNNDITTLASNGGRVQCMKVW 62

Query: 62  PPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYDG 121
           PPLGLKKFETLSYLPD+S EQL K++DYLL+  W+ C+EF++  G+VYRENHRSPGYYDG
Sbjct: 63  PPLGLKKFETLSYLPDMSNEQLGKEVDYLLRKGWIPCIEFDIHSGFVYRENHRSPGYYDG 122

Query: 122 RYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPP 179
           RYWTMWKLPM+GCTD+ QV+ EIEE KKEYP A+IRVIGFDNVRQVQCISFI YKPP
Sbjct: 123 RYWTMWKLPMFGCTDSSQVVNEIEEAKKEYPDAYIRVIGFDNVRQVQCISFIAYKPP 179

[Close]

BLAST of Spg009918 vs. TAIR 10
Match: AT5G38410.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 283.1 bits (723), Expect = 1.6e-76
Identity = 131/178 (73.60%), Postives = 159/178 (89.33%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTN-DITTLASNGGRVQCMKV 61
           +S++SSAAV +    SPAQA+MVAPFTGLKS+A FP+TRKTN DIT++ASNGGRV CMKV
Sbjct: 3   SSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKV 62

Query: 62  WPPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYD 121
           WPP+G KKFETLSYLPDLS  +LAK++DYLL+++W+ C+EFE+E G+VYRE+  +PGYYD
Sbjct: 63  WPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYD 122

Query: 122 GRYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPP 179
           GRYWTMWKLP++GCTD+ QVLKE+EECKKEYP A+IR+IGFDN RQVQCISFI YKPP
Sbjct: 123 GRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176

[Close]

BLAST of Spg009918 vs. TAIR 10
Match: AT5G38430.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 278.5 bits (711), Expect = 3.9e-75
Identity = 128/178 (71.91%), Postives = 157/178 (88.20%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRK-TNDITTLASNGGRVQCMKV 61
           +S++SSAAV +    SPAQA+MVAPFTGLKS+A FP+TRK  NDIT++ SNGGRV CMKV
Sbjct: 3   SSMLSSAAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKV 62

Query: 62  WPPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYD 121
           WPP+G KKFETLSYLPDL+  +LAK++DYLL+++W+ C+EFE+E G+VYRE+  +PGYYD
Sbjct: 63  WPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYD 122

Query: 122 GRYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPP 179
           GRYWTMWKLP++GCTD+ QVLKE+EECKKEYP A+IR+IGFDN RQVQCISFI YKPP
Sbjct: 123 GRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176

[Close]

BLAST of Spg009918 vs. TAIR 10
Match: AT5G38420.1 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 277.3 bits (708), Expect = 8.6e-75
Identity = 128/178 (71.91%), Postives = 155/178 (87.08%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRK-TNDITTLASNGGRVQCMKV 61
           +S+ SS AV +    SPAQA+MVAPFTGLKS+A FP+TRK  NDIT++ SNGGRV CMKV
Sbjct: 3   SSMFSSTAVVT----SPAQATMVAPFTGLKSSASFPVTRKANNDITSITSNGGRVSCMKV 62

Query: 62  WPPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYD 121
           WPP+G KKFETLSYLPDLS  +LAK++DYLL+++W+ C+EFE+E G+VYRE+  +PGYYD
Sbjct: 63  WPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYD 122

Query: 122 GRYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPP 179
           GRYWTMWKLP++GCTD+ QVLKE+EECKKEYP A+IR+IGFDN RQVQCISFI YKPP
Sbjct: 123 GRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176

[Close]

BLAST of Spg009918 vs. TAIR 10
Match: AT5G38410.3 (Ribulose bisphosphate carboxylase (small chain) family protein )

HSP 1 Score: 276.9 bits (707), Expect = 1.1e-74
Identity = 131/183 (71.58%), Postives = 159/183 (86.89%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRKTN-DITTLASNGGRVQCMKV 61
           +S++SSAAV +    SPAQA+MVAPFTGLKS+A FP+TRKTN DIT++ASNGGRV CMKV
Sbjct: 3   SSMLSSAAVVT----SPAQATMVAPFTGLKSSAAFPVTRKTNKDITSIASNGGRVSCMKV 62

Query: 62  WPPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVE-----KGWVYRENHRS 121
           WPP+G KKFETLSYLPDLS  +LAK++DYLL+++W+ C+EFE+E      G+VYRE+  +
Sbjct: 63  WPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEVINTKHGFVYREHGNT 122

Query: 122 PGYYDGRYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVY 179
           PGYYDGRYWTMWKLP++GCTD+ QVLKE+EECKKEYP A+IR+IGFDN RQVQCISFI Y
Sbjct: 123 PGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAY 181

[Close]

BLAST of Spg009918 vs. TAIR 10
Match: AT1G67090.1 (ribulose bisphosphate carboxylase small chain 1A )

HSP 1 Score: 273.5 bits (698), Expect = 1.2e-73
Identity = 125/178 (70.22%), Postives = 154/178 (86.52%), Query Frame = 0


Query: 2   ASIVSSAAVASVNRASPAQASMVAPFTGLKSTAGFPITRK-TNDITTLASNGGRVQCMKV 61
           +S++SSA +     ASPAQA+MVAPF GLKS+A FP TRK  NDIT++ SNGGRV CM+V
Sbjct: 3   SSMLSSATMV----ASPAQATMVAPFNGLKSSAAFPATRKANNDITSITSNGGRVNCMQV 62

Query: 62  WPPLGLKKFETLSYLPDLSMEQLAKQIDYLLKSRWVACLEFEVEKGWVYRENHRSPGYYD 121
           WPP+G KKFETLSYLPDL+  +LAK++DYL++++W+ C+EFE+E G+VYRE+  SPGYYD
Sbjct: 63  WPPIGKKKFETLSYLPDLTDSELAKEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYD 122

Query: 122 GRYWTMWKLPMYGCTDAIQVLKEIEECKKEYPQAWIRVIGFDNVRQVQCISFIVYKPP 179
           GRYWTMWKLP++GCTD+ QVLKE+EECKKEYP A+IR+IGFDN RQVQCISFI YKPP
Sbjct: 123 GRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176

The following BLAST results are available for this feature:

BLAST of Spg009918 vs. NCBI nr


Match Name	E-value	Identity	Description
AFO67218.1	4.7e-83	81.01	putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit [Aralia e...	[more]
XP_038892640.1	6.2e-83	85.31	ribulose bisphosphate carboxylase small chain, chloroplastic-like [Benincasa his...	[more]
WP_082711130.1	1.4e-82	85.31	MULTISPECIES: ribulose-1,5-bisphosphate carboxylase small subunit [Bacteria]	[more]
XP_022957356.1	3.1e-82	85.31	ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita mos...	[more]
XP_022945823.1	5.2e-82	85.96	ribulose bisphosphate carboxylase small chain, chloroplastic-like [Cucurbita mos...	[more]

BLAST of Spg009918 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08474	6.0e-81	80.79	Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Cucumis sativu...	[more]
Q39746	1.3e-78	76.84	Ribulose bisphosphate carboxylase small subunit, chloroplastic 4 OS=Flaveria pri...	[more]
P24007	4.8e-78	75.84	Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Pyrus pyrifoli...	[more]
Q39744	8.1e-78	75.71	Ribulose bisphosphate carboxylase small subunit, chloroplastic 2 OS=Flaveria pri...	[more]
Q02980	1.1e-77	75.84	Ribulose bisphosphate carboxylase small subunit, chloroplastic OS=Malus sp. OX=3...	[more]

BLAST of Spg009918 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
I7DCG5	2.3e-83	81.01	Ribulose bisphosphate carboxylase small subunit OS=Aralia elata OX=82095 PE=2 SV...	[more]
A0A6J1GZ01	1.5e-82	85.31	Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1G227	2.5e-82	85.96	Ribulose bisphosphate carboxylase small subunit OS=Cucurbita moschata OX=3662 GN...	[more]
A0A5D3CCQ3	7.4e-82	81.92	Ribulose bisphosphate carboxylase small subunit OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BG44	7.4e-82	81.92	Ribulose bisphosphate carboxylase small subunit OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of Spg009918 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G38410.1	1.6e-76	73.60	Ribulose bisphosphate carboxylase (small chain) family protein	[more]
AT5G38430.1	3.9e-75	71.91	Ribulose bisphosphate carboxylase (small chain) family protein	[more]
AT5G38420.1	8.6e-75	71.91	Ribulose bisphosphate carboxylase (small chain) family protein	[more]
AT5G38410.3	1.1e-74	71.58	Ribulose bisphosphate carboxylase (small chain) family protein	[more]
AT1G67090.1	1.2e-73	70.22	ribulose bisphosphate carboxylase small chain 1A	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024681	Ribulose bisphosphate carboxylase, small subunit	PRINTS	PR00152	RUBISCOSMALL	coord: 20..37 score: 76.22 coord: 117..146 score: 82.47 coord: 95..110 score: 60.69 coord: 67..93 score: 70.17 coord: 151..177 score: 81.36 coord: 46..64 score: 73.4
IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	SMART	SM00961	RuBisCO_small_2_a	coord: 68..177 e-value: 1.1E-33 score: 127.9
IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	PFAM	PF00101	RuBisCO_small	coord: 69..177 e-value: 3.3E-39 score: 132.8
IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	CDD	cd03527	RuBisCO_small	coord: 67..177 e-value: 1.54749E-58 score: 176.293
IPR024680	Ribulose-1,5-bisphosphate carboxylase small subunit, N-terminal	PFAM	PF12338	RbcS	coord: 3..43 e-value: 7.2E-24 score: 83.7
IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	GENE3D	3.30.190.10	Ribulose bisphosphate carboxylase, small subunit	coord: 58..181 e-value: 4.2E-60 score: 203.2
IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	SUPERFAMILY	55239	RuBisCO, small subunit	coord: 58..178
None	No IPR available	PANTHER	PTHR31262:SF14	RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC	coord: 2..177
None	No IPR available	PANTHER	PTHR31262	RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC	coord: 2..177

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg009918.1	Spg009918.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:0009853	photorespiration
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0009536	plastid