Spg009907 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg009907
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Homologous-pairing protein 2 homolog
Location	scaffold7: 3999908 .. 4001906 (+)
RNA-Seq Expression	Spg009907
Synteny	Spg009907

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAAAAAAGATATATTTTTACTCTTTACACTTCGGCTTCCTCGAGAAGTTAAGGGAAAGCACTCCGCAAAATTTCCCGCCCATTTCTCTGCACTTTTCCGATCAATGGCTCCCAAATCCGATAGCGCAGAAGGTGAGCAGTCGCATAGATCTTTTGAACTTTTGCCAATATGATTTCGTGATTGTAATTTTGGTTTCAATTTTGGATTTACGATATCTTCAACGTAGAAATTGAATCCTTCTATCCTGACTTCCTCCGTTTCTAAACTTGACAGCAATCGTGCTCAACTTCGTAAATGAGGTATTTGTTTCATCACTGTGCTTCACTGATTTCTTTGTTCATCCGTTAACCGCTTTCATTTCGCCTCACTGGTTTAATTGCTAGTCGGCGAGCGTGTGTAGTTCCGTTTTCCCCCTTCTGTGCTTATTGCAGCTAAGACTGTAGGCTTTTAAACTGTATTCTACTTATATGTTCCTGTTGTTTAGCTGTAACGAAATGCTAATTTGTATGTCGAATTTATCTATATTCGTCGATTGTGTGCTGGGTTAATATACACCCTTAAGAACACACGTTATTCTCTCAAGGAGCGATTGGTTTCGATATACCTTCATTTCGCTATCGAGTGTGTTTGCAATTGCATTTCGCTATGCAACTCTTCTGTAGCGCTATTATCATCCTTTATTCTTTGGAGAGCCCTTTTGGGCTTTTCTGTCTAACGGCATTTGGCGTATTTTCGTTCTGTTCAGCAAAATCGTCCATTAAATTCTCAAAATGTTGCTGATTGCTTACAAAAGTTCAACCTCAAGAAGACGGCGGTGCAAAAGGCACTGGATGCACTTGCCGATAGTGGAAAGATTTCTTTCAAGGAATATGGCAAACAGAAGATATATCTCGCCCGGCAAGACCAATTCAAGATCCCAAACAGCGAGGAACTTACTCAGATGAAGGAAGCAAACGCCAAACTGCAGCAACGTCTGGACGAGCAAAAAAAAGCTATTAGCCAGGTTGAGGAAGGTAATCCCACTTTTGAATTTCAAAGAAGTCTTCAATAATGTAAATCTTATATATCACTTGAGCAATTTCAATTACTCTATTCAAATTTCCAGAACATGAAAATGATGGTGCCATGAACTTTTGTAACAGGAATTCGAACGTTGCAATCAAATTTAACGCTGGAACAGATGCGGGAAAAAGAAGCCAGGCTCAGAAAGGAGGTAGATAGATGCTAAATCAGATAGTTGTAACTTTAATTGGTTCTGAGTAGTGATAACGTTGCTCTCTTTATCTGTTGTTAAGGTGTCAAAAAATAGTTTTTTGGATACATGTTTGTCAGGTTAAAGAATTGGAAGACAAATTGGAAATATTGCGCGGAGGTGTCACACTGGTGAGTCCAGAAGACCGCAAAGCAATTGAGCATATGTACTCTGAGAAATTAAGCCAGTGGCGAAGGCGAAAAAGGATGTTCAAAGATATATGGGATGCTATCACTGAGAATTCACCTAAGGATCTAAAAGAATTTAAGGTTCTCTCTTGTTATTATACTTCGACTGTTTTTGCTCAAGTCGTTTGGATTAAATTCTTTGTATTCTTGCAGGAAGAACTTGGCCTTGAGTACGACGAAGATGTAGGAGTGAATCTGCAGTCATTCAGCGACATGTTACCACAAAATCGAAAACGGCCCAGGGGAAAGTGAGTGATACCATAAACCGGGGCGTCGAACAGGAGTAAAACAAAGAAGAATTATTTGCTTATTTTACCTTTCTTTATTCAATCCGTGCTTAAAGGCAAATACAGGTAGATTCTGTCTGCCTAGAGCTTGGCTTTTGTATCACGAATACTTATCAAGTTGCTTTACCTTGATGCATGCTAAGTTGAAGCCACCATTTATTTACCGTAATGCTTAGTAAAAGAAACTACCGTTATGCTTAATTTTCTCGAATGGGCTTTTACCGTATTTTCATCTTTAGCCTCATGTATTGCCCAACAAGGTG

mRNA sequence

ATGGCTCCCAAATCCGATAGCGCAGAAGCAATCGTGCTCAACTTCGTAAATGAGCAAAATCGTCCATTAAATTCTCAAAATGTTGCTGATTGCTTACAAAAGTTCAACCTCAAGAAGACGGCGGTGCAAAAGGCACTGGATGCACTTGCCGATAGTGGAAAGATTTCTTTCAAGGAATATGGCAAACAGAAGATATATCTCGCCCGGCAAGACCAATTCAAGATCCCAAACAGCGAGGAACTTACTCAGATGAAGGAAGCAAACGCCAAACTGCAGCAACGTCTGGACGAGCAAAAAAAAGCTATTAGCCAGGTTGAGGAAGGAATTCGAACGTTGCAATCAAATTTAACGCTGGAACAGATGCGGGAAAAAGAAGCCAGGCTCAGAAAGGAGGTTAAAGAATTGGAAGACAAATTGGAAATATTGCGCGGAGGTGTCACACTGGTGAGTCCAGAAGACCGCAAAGCAATTGAGCATATGTACTCTGAGAAATTAAGCCAGTGGCGAAGGCGAAAAAGGATGTTCAAAGATATATGGGATGCTATCACTGAGAATTCACCTAAGGATCTAAAAGAATTTAAGGAAGAACTTGGCCTTGAGTACGACGAAGATGTAGGAGTGAATCTGCAGTCATTCAGCGACATGTTACCACAAAATCGAAAACGGCCCAGGGGAAAGTGA

Coding sequence (CDS)

ATGGCTCCCAAATCCGATAGCGCAGAAGCAATCGTGCTCAACTTCGTAAATGAGCAAAATCGTCCATTAAATTCTCAAAATGTTGCTGATTGCTTACAAAAGTTCAACCTCAAGAAGACGGCGGTGCAAAAGGCACTGGATGCACTTGCCGATAGTGGAAAGATTTCTTTCAAGGAATATGGCAAACAGAAGATATATCTCGCCCGGCAAGACCAATTCAAGATCCCAAACAGCGAGGAACTTACTCAGATGAAGGAAGCAAACGCCAAACTGCAGCAACGTCTGGACGAGCAAAAAAAAGCTATTAGCCAGGTTGAGGAAGGAATTCGAACGTTGCAATCAAATTTAACGCTGGAACAGATGCGGGAAAAAGAAGCCAGGCTCAGAAAGGAGGTTAAAGAATTGGAAGACAAATTGGAAATATTGCGCGGAGGTGTCACACTGGTGAGTCCAGAAGACCGCAAAGCAATTGAGCATATGTACTCTGAGAAATTAAGCCAGTGGCGAAGGCGAAAAAGGATGTTCAAAGATATATGGGATGCTATCACTGAGAATTCACCTAAGGATCTAAAAGAATTTAAGGAAGAACTTGGCCTTGAGTACGACGAAGATGTAGGAGTGAATCTGCAGTCATTCAGCGACATGTTACCACAAAATCGAAAACGGCCCAGGGGAAAGTGA

Protein sequence

MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEYGKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQMREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWDAITENSPKDLKEFKEELGLEYDEDVGVNLQSFSDMLPQNRKRPRGK

Homology

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BLAST of Spg009907 vs. NCBI nr
Match: XP_038893461.1 (homologous-pairing protein 2 homolog [Benincasa hispida])

HSP 1 Score: 401.4 bits (1030), Expect = 5.3e-108
Identity = 210/226 (92.92%), Postives = 218/226 (96.46%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQN AD LQKFNLKKTAVQKALDALADSG+ISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDALADSGRISFKEY 60

Query: 61  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 120
           GKQKIY+ARQDQF+IPNSEELTQMKEANAKLQQ LDE KK ISQVEE IRTLQSNLTLEQ
Sbjct: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQQHLDEHKKVISQVEEEIRTLQSNLTLEQ 120

Query: 121 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 180
           MREKEA LRKEVKELEDKLEILRGGVTLVSPEDRKAIE ++SEKLSQWR+RKRMFKDIWD
Sbjct: 121 MREKEAMLRKEVKELEDKLEILRGGVTLVSPEDRKAIEQIFSEKLSQWRKRKRMFKDIWD 180

Query: 181 AITENSPKDLKEFKEELGLEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
           AITENSPKDLK+FKEELG+EYDEDVGVNLQSFSDMLPQNRKRPRGK
Sbjct: 181 AITENSPKDLKDFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 226

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BLAST of Spg009907 vs. NCBI nr
Match: XP_022945821.1 (homologous-pairing protein 2 homolog isoform X2 [Cucurbita moschata])

HSP 1 Score: 400.2 bits (1027), Expect = 1.2e-107
Identity = 209/226 (92.48%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60

Query: 61  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 120
           GKQKIYLARQDQFKIPNSEELTQMKE+N+ LQQ L EQKKAISQVEE IRTLQSNLTL+Q
Sbjct: 61  GKQKIYLARQDQFKIPNSEELTQMKESNSTLQQNLHEQKKAISQVEEEIRTLQSNLTLQQ 120

Query: 121 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 180
           MREKEARLRKEVKEL DKLEILR GVTLV PEDRKAIEH+YSEKLSQWRRRKRMFKD+WD
Sbjct: 121 MREKEARLRKEVKELVDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 AITENSPKDLKEFKEELGLEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
            ITENSPKDLKEFKEELG+EYDEDVGVNLQSF+DMLPQ RKRPRG+
Sbjct: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 226

[Close]

BLAST of Spg009907 vs. NCBI nr
Match: XP_022945822.1 (homologous-pairing protein 2 homolog isoform X3 [Cucurbita moschata])

HSP 1 Score: 400.2 bits (1027), Expect = 1.2e-107
Identity = 209/226 (92.48%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60

Query: 61  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 120
           GKQKIYLARQDQFKIPNSEELTQMKE+N+ LQQ L EQKKAISQVEE IRTLQSNLTL+Q
Sbjct: 61  GKQKIYLARQDQFKIPNSEELTQMKESNSTLQQNLHEQKKAISQVEEEIRTLQSNLTLQQ 120

Query: 121 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 180
           MREKEARLRKEVKEL DKLEILR GVTLV PEDRKAIEH+YSEKLSQWRRRKRMFKD+WD
Sbjct: 121 MREKEARLRKEVKELVDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 AITENSPKDLKEFKEELGLEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
            ITENSPKDLKEFKEELG+EYDEDVGVNLQSF+DMLPQ RKRPRG+
Sbjct: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 226

[Close]

BLAST of Spg009907 vs. NCBI nr
Match: XP_023541752.1 (homologous-pairing protein 2 homolog isoform X3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.1 bits (1024), Expect = 2.6e-107
Identity = 208/226 (92.04%), Postives = 215/226 (95.13%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPK D AEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDAL DSGKISFKEY
Sbjct: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALVDSGKISFKEY 60

Query: 61  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 120
           GKQKIYLARQDQFKIPNSEELTQMKE+N+ LQQ L EQKKAISQVEE IRTLQSNLTLEQ
Sbjct: 61  GKQKIYLARQDQFKIPNSEELTQMKESNSTLQQNLHEQKKAISQVEEDIRTLQSNLTLEQ 120

Query: 121 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 180
           MREKEARLRKEVKELEDKLEILR GVTLV PEDRKAIEH+YSEKLSQWRRRKRMFKD+WD
Sbjct: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 AITENSPKDLKEFKEELGLEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
            ITENSPKDLKEFKEELG+EYDEDVGVNLQSF+DMLPQ RKRPRG+
Sbjct: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 226

[Close]

BLAST of Spg009907 vs. NCBI nr
Match: XP_023541751.1 (homologous-pairing protein 2 homolog isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 399.1 bits (1024), Expect = 2.6e-107
Identity = 208/226 (92.04%), Postives = 215/226 (95.13%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPK D AEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDAL DSGKISFKEY
Sbjct: 1   MAPKFDGAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALVDSGKISFKEY 60

Query: 61  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 120
           GKQKIYLARQDQFKIPNSEELTQMKE+N+ LQQ L EQKKAISQVEE IRTLQSNLTLEQ
Sbjct: 61  GKQKIYLARQDQFKIPNSEELTQMKESNSTLQQNLHEQKKAISQVEEDIRTLQSNLTLEQ 120

Query: 121 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 180
           MREKEARLRKEVKELEDKLEILR GVTLV PEDRKAIEH+YSEKLSQWRRRKRMFKD+WD
Sbjct: 121 MREKEARLRKEVKELEDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 AITENSPKDLKEFKEELGLEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
            ITENSPKDLKEFKEELG+EYDEDVGVNLQSF+DMLPQ RKRPRG+
Sbjct: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 226

[Close]

BLAST of Spg009907 vs. ExPASy Swiss-Prot
Match: Q9FX64 (Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana OX=3702 GN=HOP2 PE=1 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 6.1e-91
Identity = 164/226 (72.57%), Postives = 205/226 (90.71%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKSD+ EAIVLNFVNEQN+PLN+QN AD LQKFNLKKTAVQKALD+LAD+GKI+FKEY
Sbjct: 1   MAPKSDNTEAIVLNFVNEQNKPLNTQNAADALQKFNLKKTAVQKALDSLADAGKITFKEY 60

Query: 61  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 120
           GKQKIY+ARQDQF+IPNSEEL QMKE NAKLQ++L E+KK IS VE  I++LQSNLTLE+
Sbjct: 61  GKQKIYIARQDQFEIPNSEELAQMKEDNAKLQEQLQEKKKTISDVESEIKSLQSNLTLEE 120

Query: 121 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 180
           ++EK+A+LRKEVKE+E+KL  LR G+TLV PED+KA+E MY++K++QWR+RKRMF+DIWD
Sbjct: 121 IQEKDAKLRKEVKEMEEKLVKLREGITLVRPEDKKAVEDMYADKINQWRKRKRMFRDIWD 180

Query: 181 AITENSPKDLKEFKEELGLEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
            +TENSPKD+KE KEELG+EYDEDVG++ Q+++D++   +KRPRG+
Sbjct: 181 TVTENSPKDVKELKEELGIEYDEDVGLSFQAYADLIQHGKKRPRGQ 226

[Close]

BLAST of Spg009907 vs. ExPASy Swiss-Prot
Match: Q63ZL2 (Homologous-pairing protein 2 homolog OS=Xenopus laevis OX=8355 GN=psmc3ip PE=2 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.7e-29
Identity = 78/207 (37.68%), Postives = 123/207 (59.42%), Query Frame = 0


Query: 4   KSDSAEAIVLNFVNEQNRPLNSQNVADCLQK-FNLKKTAVQKALDALADSGKISFKEYGK 63
           K  +A +I+L ++N+QNRP ++Q+V   LQ+   L KTAV K ++ LA  GKI  K YGK
Sbjct: 5   KEAAASSIILKYLNDQNRPYSTQDVFSNLQRDHGLGKTAVVKTMELLAQKGKIKEKVYGK 64

Query: 64  QKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQMR 123
           QKIY A Q+QF   +  EL  +     +L  +L   +++  Q+E  ++ L S+LT E+M 
Sbjct: 65  QKIYFADQEQFPSVSDSELKDLDAQVTELSSKLQSSQQSCRQLESELKDLTSSLTTEEML 124

Query: 124 EKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWDAI 183
           ++ + L++E    E KL  ++     V+P +++ +         +W++RKRM  DI+DAI
Sbjct: 125 KEVSCLKEECDRHEHKLTNIKSATNHVTPAEKEKVYGERKHFCKEWKKRKRMATDIFDAI 184

Query: 184 TENSPKDLKEFKEELGLEYDEDVGVNL 210
            E  PK  K+F EE+G+E DED  V +
Sbjct: 185 LEGYPKSKKQFFEEVGVETDEDCNVTV 211

[Close]

BLAST of Spg009907 vs. ExPASy Swiss-Prot
Match: Q91ZY6 (Homologous-pairing protein 2 homolog OS=Rattus norvegicus OX=10116 GN=Psmc3ip PE=1 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 9.6e-28
Identity = 79/209 (37.80%), Postives = 119/209 (56.94%), Query Frame = 0


Query: 2   APKSDSAEAIVLNFVNEQNRPLNSQNVADCLQK-FNLKKTAVQKALDALADSGKISFKEY 61
           A  +  A  IVL ++ EQNRP ++Q+V   LQK   L K AV KALD LA  GKI  K Y
Sbjct: 6   AEAAAGAPGIVLRYLQEQNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQQGKIKEKTY 65

Query: 62  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 121
           GKQKIY A QDQF   +  +L  +  +   L  ++   +++   +E  ++ L S LT  +
Sbjct: 66  GKQKIYFADQDQFDTVSDADLHSLDASIMALTAKVQGLQQSCRHMEAELKELTSALTTPE 125

Query: 122 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 181
           M+ +   L+KE     ++L+ ++     V+PE+++ +     +   +WR+RKRM  ++ D
Sbjct: 126 MQTEIQELKKECARYTERLKNIKAATNHVTPEEKEKVYRERQKYCKEWRKRKRMTTELCD 185

Query: 182 AITENSPKDLKEFKEELGLEYDEDVGVNL 210
           AI E  PK  K+F EE+G+E DED  V L
Sbjct: 186 AILEGYPKSKKQFFEEVGIETDEDHNVTL 214

[Close]

BLAST of Spg009907 vs. ExPASy Swiss-Prot
Match: O35047 (Homologous-pairing protein 2 homolog OS=Mus musculus OX=10090 GN=Psmc3ip PE=1 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 3.6e-27
Identity = 77/209 (36.84%), Postives = 121/209 (57.89%), Query Frame = 0


Query: 2   APKSDSAEAIVLNFVNEQNRPLNSQNVADCLQK-FNLKKTAVQKALDALADSGKISFKEY 61
           A  +  A  I+L ++ EQNRP ++Q+V   LQK   L K AV KALD LA  GKI  K Y
Sbjct: 6   AEAAAGAPGIILRYLQEQNRPYSAQDVFGNLQKEHGLGKAAVVKALDQLAQEGKIKEKTY 65

Query: 62  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 121
           GKQKIY A Q+QF   +  +L  +  +   L  ++   +++   +E  ++ L S LT  +
Sbjct: 66  GKQKIYFADQNQFDTVSDADLHGLDASIVALTAKVQSLQQSCRHMEAELKELTSALTTPE 125

Query: 122 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 181
           M+++   L+KE  +  ++L+ ++     V+PE+++ +     +   +WR+RKRM  ++ D
Sbjct: 126 MQKEIQELKKECAQYTERLKNIKAATNHVTPEEKEKVYRDRQKYCKEWRKRKRMTTELCD 185

Query: 182 AITENSPKDLKEFKEELGLEYDEDVGVNL 210
           AI E  PK  K+F EE+G+E DED  V L
Sbjct: 186 AILEGYPKSKKQFFEEVGIETDEDHNVLL 214

[Close]

BLAST of Spg009907 vs. ExPASy Swiss-Prot
Match: Q9P2W1 (Homologous-pairing protein 2 homolog OS=Homo sapiens OX=9606 GN=PSMC3IP PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.1e-26
Identity = 75/209 (35.89%), Postives = 118/209 (56.46%), Query Frame = 0


Query: 2   APKSDSAEAIVLNFVNEQNRPLNSQNVADCLQK-FNLKKTAVQKALDALADSGKISFKEY 61
           A  +  A  I+L ++ EQNRP +SQ+V   LQ+   L K  V K L+ LA  GKI  K Y
Sbjct: 6   AEAAAGAAGILLRYLQEQNRPYSSQDVFGNLQREHGLGKAVVVKTLEQLAQQGKIKEKMY 65

Query: 62  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 121
           GKQKIY A QDQF + +  +L  +      L  ++   +++   +E  ++ L S LT  +
Sbjct: 66  GKQKIYFADQDQFDMVSDADLQVLDGKIVALTAKVQSLQQSCRYMEAELKELSSALTTPE 125

Query: 122 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 181
           M+++   L+KE     ++L+ ++     V+PE+++ +     +   +WR+RKRM  ++ D
Sbjct: 126 MQKEIQELKKECAGYRERLKNIKAATNHVTPEEKEQVYRERQKYCKEWRKRKRMATELSD 185

Query: 182 AITENSPKDLKEFKEELGLEYDEDVGVNL 210
           AI E  PK  K+F EE+G+E DED  V L
Sbjct: 186 AILEGYPKSKKQFFEEVGIETDEDYNVTL 214

[Close]

BLAST of Spg009907 vs. ExPASy TrEMBL
Match: A0A6J1G1Y1 (Homologous-pairing protein 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449951 PE=3 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 5.7e-108
Identity = 209/226 (92.48%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60

Query: 61  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 120
           GKQKIYLARQDQFKIPNSEELTQMKE+N+ LQQ L EQKKAISQVEE IRTLQSNLTL+Q
Sbjct: 61  GKQKIYLARQDQFKIPNSEELTQMKESNSTLQQNLHEQKKAISQVEEEIRTLQSNLTLQQ 120

Query: 121 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 180
           MREKEARLRKEVKEL DKLEILR GVTLV PEDRKAIEH+YSEKLSQWRRRKRMFKD+WD
Sbjct: 121 MREKEARLRKEVKELVDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 AITENSPKDLKEFKEELGLEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
            ITENSPKDLKEFKEELG+EYDEDVGVNLQSF+DMLPQ RKRPRG+
Sbjct: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 226

[Close]

BLAST of Spg009907 vs. ExPASy TrEMBL
Match: A0A6J1G1Z5 (Homologous-pairing protein 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC111449951 PE=3 SV=1)

HSP 1 Score: 400.2 bits (1027), Expect = 5.7e-108
Identity = 209/226 (92.48%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60

Query: 61  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 120
           GKQKIYLARQDQFKIPNSEELTQMKE+N+ LQQ L EQKKAISQVEE IRTLQSNLTL+Q
Sbjct: 61  GKQKIYLARQDQFKIPNSEELTQMKESNSTLQQNLHEQKKAISQVEEEIRTLQSNLTLQQ 120

Query: 121 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 180
           MREKEARLRKEVKEL DKLEILR GVTLV PEDRKAIEH+YSEKLSQWRRRKRMFKD+WD
Sbjct: 121 MREKEARLRKEVKELVDKLEILREGVTLVKPEDRKAIEHIYSEKLSQWRRRKRMFKDLWD 180

Query: 181 AITENSPKDLKEFKEELGLEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
            ITENSPKDLKEFKEELG+EYDEDVGVNLQSF+DMLPQ RKRPRG+
Sbjct: 181 TITENSPKDLKEFKEELGIEYDEDVGVNLQSFTDMLPQTRKRPRGR 226

[Close]

BLAST of Spg009907 vs. ExPASy TrEMBL
Match: A0A6J1DBV0 (Homologous-pairing protein 2 homolog OS=Momordica charantia OX=3673 GN=LOC111018666 PE=3 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.7e-107
Identity = 208/226 (92.04%), Postives = 216/226 (95.58%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLN QNVAD LQKFNLKKTAVQKALD LADSG+ISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNVQNVADSLQKFNLKKTAVQKALDTLADSGRISFKEY 60

Query: 61  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 120
           GKQKIYLARQDQFKIPN EELTQMKEANAKLQQ LDEQK+AI QVEE IRTLQSNLTLEQ
Sbjct: 61  GKQKIYLARQDQFKIPNGEELTQMKEANAKLQQHLDEQKRAIGQVEEEIRTLQSNLTLEQ 120

Query: 121 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 180
           MREKEA LRKEVKELEDKL+ILRGGVTLV PE+RKAIEH+YSEKLSQWR+RK+MFKDIWD
Sbjct: 121 MREKEAMLRKEVKELEDKLKILRGGVTLVRPEERKAIEHIYSEKLSQWRKRKKMFKDIWD 180

Query: 181 AITENSPKDLKEFKEELGLEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
           AITENSPKDLKEFKEELG+EYDEDVGVN QSFSDMLPQNRKRPRGK
Sbjct: 181 AITENSPKDLKEFKEELGIEYDEDVGVNFQSFSDMLPQNRKRPRGK 226

[Close]

BLAST of Spg009907 vs. ExPASy TrEMBL
Match: A0A1S3BG28 (Homologous-pairing protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103489274 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.3e-107
Identity = 207/226 (91.59%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQN AD LQKFNLKKTAVQKALD+LAD+G+ISFKEY
Sbjct: 40  MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 99

Query: 61  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 120
           GKQKIY+ARQDQF+IPNSEELTQMKEANAKLQ+ LDE KKAISQVEE IRTLQSNLTLEQ
Sbjct: 100 GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 159

Query: 121 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 180
           MREKE  LRKEVKELEDKLE+LR GVTLVSPEDRKAIE +YSEKLSQWR+RKRMFKDIWD
Sbjct: 160 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 219

Query: 181 AITENSPKDLKEFKEELGLEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
           AITENSPKDLKEFKEELG+EYDEDVGVNLQSFSDMLPQNRKRPRGK
Sbjct: 220 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 265

[Close]

BLAST of Spg009907 vs. ExPASy TrEMBL
Match: A0A5A7SYM2 (Homologous-pairing protein 2 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G00850 PE=3 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 6.3e-107
Identity = 207/226 (91.59%), Postives = 217/226 (96.02%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKSDSAEAIVLNFVNEQNRPLNSQN AD LQKFNLKKTAVQKALD+LAD+G+ISFKEY
Sbjct: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNAADSLQKFNLKKTAVQKALDSLADTGRISFKEY 60

Query: 61  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 120
           GKQKIY+ARQDQF+IPNSEELTQMKEANAKLQ+ LDE KKAISQVEE IRTLQSNLTLEQ
Sbjct: 61  GKQKIYIARQDQFQIPNSEELTQMKEANAKLQKHLDEHKKAISQVEEEIRTLQSNLTLEQ 120

Query: 121 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 180
           MREKE  LRKEVKELEDKLE+LR GVTLVSPEDRKAIE +YSEKLSQWR+RKRMFKDIWD
Sbjct: 121 MREKEVMLRKEVKELEDKLEVLRRGVTLVSPEDRKAIEQIYSEKLSQWRKRKRMFKDIWD 180

Query: 181 AITENSPKDLKEFKEELGLEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
           AITENSPKDLKEFKEELG+EYDEDVGVNLQSFSDMLPQNRKRPRGK
Sbjct: 181 AITENSPKDLKEFKEELGIEYDEDVGVNLQSFSDMLPQNRKRPRGK 226

[Close]

BLAST of Spg009907 vs. TAIR 10
Match: AT1G13330.1 (Arabidopsis Hop2 homolog )

HSP 1 Score: 335.1 bits (858), Expect = 4.3e-92
Identity = 164/226 (72.57%), Postives = 205/226 (90.71%), Query Frame = 0


Query: 1   MAPKSDSAEAIVLNFVNEQNRPLNSQNVADCLQKFNLKKTAVQKALDALADSGKISFKEY 60
           MAPKSD+ EAIVLNFVNEQN+PLN+QN AD LQKFNLKKTAVQKALD+LAD+GKI+FKEY
Sbjct: 1   MAPKSDNTEAIVLNFVNEQNKPLNTQNAADALQKFNLKKTAVQKALDSLADAGKITFKEY 60

Query: 61  GKQKIYLARQDQFKIPNSEELTQMKEANAKLQQRLDEQKKAISQVEEGIRTLQSNLTLEQ 120
           GKQKIY+ARQDQF+IPNSEEL QMKE NAKLQ++L E+KK IS VE  I++LQSNLTLE+
Sbjct: 61  GKQKIYIARQDQFEIPNSEELAQMKEDNAKLQEQLQEKKKTISDVESEIKSLQSNLTLEE 120

Query: 121 MREKEARLRKEVKELEDKLEILRGGVTLVSPEDRKAIEHMYSEKLSQWRRRKRMFKDIWD 180
           ++EK+A+LRKEVKE+E+KL  LR G+TLV PED+KA+E MY++K++QWR+RKRMF+DIWD
Sbjct: 121 IQEKDAKLRKEVKEMEEKLVKLREGITLVRPEDKKAVEDMYADKINQWRKRKRMFRDIWD 180

Query: 181 AITENSPKDLKEFKEELGLEYDEDVGVNLQSFSDMLPQNRKRPRGK 227
            +TENSPKD+KE KEELG+EYDEDVG++ Q+++D++   +KRPRG+
Sbjct: 181 TVTENSPKDVKELKEELGIEYDEDVGLSFQAYADLIQHGKKRPRGQ 226

The following BLAST results are available for this feature:

BLAST of Spg009907 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038893461.1	5.3e-108	92.92	homologous-pairing protein 2 homolog [Benincasa hispida]	[more]
XP_022945821.1	1.2e-107	92.48	homologous-pairing protein 2 homolog isoform X2 [Cucurbita moschata]	[more]
XP_022945822.1	1.2e-107	92.48	homologous-pairing protein 2 homolog isoform X3 [Cucurbita moschata]	[more]
XP_023541752.1	2.6e-107	92.04	homologous-pairing protein 2 homolog isoform X3 [Cucurbita pepo subsp. pepo]	[more]
XP_023541751.1	2.6e-107	92.04	homologous-pairing protein 2 homolog isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg009907 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FX64	6.1e-91	72.57	Homologous-pairing protein 2 homolog OS=Arabidopsis thaliana OX=3702 GN=HOP2 PE=...	[more]
Q63ZL2	1.7e-29	37.68	Homologous-pairing protein 2 homolog OS=Xenopus laevis OX=8355 GN=psmc3ip PE=2 S...	[more]
Q91ZY6	9.6e-28	37.80	Homologous-pairing protein 2 homolog OS=Rattus norvegicus OX=10116 GN=Psmc3ip PE...	[more]
O35047	3.6e-27	36.84	Homologous-pairing protein 2 homolog OS=Mus musculus OX=10090 GN=Psmc3ip PE=1 SV...	[more]
Q9P2W1	3.1e-26	35.89	Homologous-pairing protein 2 homolog OS=Homo sapiens OX=9606 GN=PSMC3IP PE=1 SV=...	[more]

BLAST of Spg009907 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G1Y1	5.7e-108	92.48	Homologous-pairing protein 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114499...	[more]
A0A6J1G1Z5	5.7e-108	92.48	Homologous-pairing protein 2 homolog OS=Cucurbita moschata OX=3662 GN=LOC1114499...	[more]
A0A6J1DBV0	1.7e-107	92.04	Homologous-pairing protein 2 homolog OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A1S3BG28	6.3e-107	91.59	Homologous-pairing protein 2 homolog OS=Cucumis melo OX=3656 GN=LOC103489274 PE=...	[more]
A0A5A7SYM2	6.3e-107	91.59	Homologous-pairing protein 2 homolog OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Spg009907 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G13330.1	4.3e-92	72.57	Arabidopsis Hop2 homolog	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 81..115
None	No IPR available	COILS	Coil	Coil	coord: 118..145
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 1..78 e-value: 2.3E-24 score: 87.1
IPR010776	Homologous-pairing protein 2, winged helix domain	PFAM	PF07106	TBPIP	coord: 8..68 e-value: 1.5E-25 score: 88.9
IPR040661	Leucine zipper with capping helix domain	PFAM	PF18517	LZ3wCH	coord: 149..206 e-value: 4.3E-17 score: 61.9
IPR040461	Homologous-pairing protein 2	PANTHER	PTHR15938	TBP-1 INTERACTING PROTEIN	coord: 1..221
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 6..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg009907.1	Spg009907.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007129	homologous chromosome pairing at meiosis
biological_process	GO:0000709	meiotic joint molecule formation
biological_process	GO:0010774	meiotic strand invasion involved in reciprocal meiotic recombination
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0007131	reciprocal meiotic recombination
cellular_component	GO:0000794	condensed nuclear chromosome
cellular_component	GO:0120231	DNA recombinase auxiliary factor complex
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0120230	recombinase activator activity