Spg009488 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg009488
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionPPM-type phosphatase domain-containing protein
Locationscaffold9: 25097175 .. 25098089 (+)
RNA-Seq ExpressionSpg009488
SyntenySpg009488
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTATGGAACAATAGCGAGTTTCGTTTATGATTTGCTTTTGTGGTGGGAAGAAGCTCATAAGATTGGTTCCCGTGTTGTGTCTGCTGAGTACTTTTTTATTCTCCTTTTGGGCTCAGGGAGGGAGGTGCTAGGTAGATCCGTCAAAGTTCTGACTGTCTATTTTGTTCCTCTGACAATGAATTGCAGCTGAAAACTCAAGAGTAGGAGATCGCTGGACGTGTATAAATATGAGCCTGGCATGTCTTGTATGCAATAGTGTAGAGAGTCCCTCACACTCGTTTAGGAGCTATTCAGTTTCGAGTTCAGACAATGATGGAAGATGTACCGCGATGGCCAACTGCCTAATTTGGAGACCATCTTTTCCTCCAACACACCACCCATCGTATGCAGCATCAGCCAAGGTAACTCCCCAACCAAACATTGTCAACAGCGATGGAATGGACGGTACCCCGAGGCTGGTGCGAAGCCGAGCAGTAAGAAGGGACCTGGTACGAGACTGGAATTTCGACGAGGTGGTCGTAGTTCAGCATTAGTACGTTTTGAGTTTGAGAAGAAGAGGAGAGTAGTAGGGTCTTCAAATGACATGGTGATGGCCTGAAATGATGGGGTTGGAGGTAGCATCTTGCTTCCTATGTATTTTTGTTTTCTTATGGGTACAACTGAACTCACACTTCCACTGGAAGAGTCTGCACATTTGTAAGCATGAGAAAATGGGATTTAGAACTTTGTTTATATATTACCTACTTACTACTGATTCATAGGAGGCAGGGTTGGGGTGGGTTTAAATTAGCTTTGTAAACTTGGATGGAATTATGCTTTCAAAGTTTTCCATGATATACACCAAGTTTATTTGCATATAAAAAGAAATAAGAAGTGCTAAGAACTCTTTTTGTAGAATAGTTCAAATCTAAAT

mRNA sequence

ATGTATGGAACAATAGCGAGTTTCGTTTATGATTTGCTTTTGTGGTGGGAAGAAGCTCATAAGATTGGTTCCCGTGTTGTGTCTGCTGAGTACTTTTTTATTCTCCTTTTGGGCTCAGGGAGGGAGGTGCTAGCTGAAAACTCAAGAGTAGGAGATCGCTGGACGTGTATAAATATGAGCCTGGCATGTCTTGTATGCAATAGTGTAGAGAGTCCCTCACACTCGTTTAGGAGCTATTCAGTTTCGAGTTCAGACAATGATGGAAGATGTACCGCGATGGCCAACTGCCTAATTTGGAGACCATCTTTTCCTCCAACACACCACCCATCGTATGCAGCATCAGCCAAGGTAACTCCCCAACCAAACATTGTCAACAGCGATGGAATGGACGGTACCCCGAGGCTGGTGCGAAGCCGAGCAGTAAGAAGGGACCTGGTACGAGACTGGAATTTCGACGAGGTGGTCGTAGTTCAGCATTAG

Coding sequence (CDS)

ATGTATGGAACAATAGCGAGTTTCGTTTATGATTTGCTTTTGTGGTGGGAAGAAGCTCATAAGATTGGTTCCCGTGTTGTGTCTGCTGAGTACTTTTTTATTCTCCTTTTGGGCTCAGGGAGGGAGGTGCTAGCTGAAAACTCAAGAGTAGGAGATCGCTGGACGTGTATAAATATGAGCCTGGCATGTCTTGTATGCAATAGTGTAGAGAGTCCCTCACACTCGTTTAGGAGCTATTCAGTTTCGAGTTCAGACAATGATGGAAGATGTACCGCGATGGCCAACTGCCTAATTTGGAGACCATCTTTTCCTCCAACACACCACCCATCGTATGCAGCATCAGCCAAGGTAACTCCCCAACCAAACATTGTCAACAGCGATGGAATGGACGGTACCCCGAGGCTGGTGCGAAGCCGAGCAGTAAGAAGGGACCTGGTACGAGACTGGAATTTCGACGAGGTGGTCGTAGTTCAGCATTAG

Protein sequence

MYGTIASFVYDLLLWWEEAHKIGSRVVSAEYFFILLLGSGREVLAENSRVGDRWTCINMSLACLVCNSVESPSHSFRSYSVSSSDNDGRCTAMANCLIWRPSFPPTHHPSYAASAKVTPQPNIVNSDGMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH
Homology
[Close]
BLAST of Spg009488 vs. NCBI nr
Match: KAG7037221.1 (hypothetical protein SDJN02_00844, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 220.7 bits (561), Expect = 9.0e-54
Identity = 115/159 (72.33%), Postives = 118/159 (74.21%), Query Frame = 0 

Query: 1   MYGTIASFVYDLLLWWEEAHKIGSRVVSAEYFFILLLGSGREVLAENSRVGDRWTCINMS 60
           MYGT+ SFVYD                       LL GSG      N RVGD W  INMS
Sbjct: 1   MYGTMTSFVYD-----------------------LLRGSG------NLRVGDWWRYINMS 60

Query: 61  LACLVCNSVESPSHSFRSYSVSSSDNDGRCTAMANCLIWRPSFPPTHHPSYAASAKVTPQ 120
           LACLVCNSVESPSHSFRSYSVSSSDN+GRC +MANCLIWRPSFPPTHHPSYA SAKVTP 
Sbjct: 61  LACLVCNSVESPSHSFRSYSVSSSDNEGRCNSMANCLIWRPSFPPTHHPSYAESAKVTPH 120

Query: 121 PNIVNSDGMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 160
           PNIV SD MDG PRLVRSRAVRRDLVRDWNFDEVVVVQH
Sbjct: 121 PNIVISDRMDGNPRLVRSRAVRRDLVRDWNFDEVVVVQH 130

[Close]
BLAST of Spg009488 vs. NCBI nr
Match: KAG6607600.1 (hypothetical protein SDJN03_00942, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 215.3 bits (547), Expect = 3.8e-52
Identity = 103/119 (86.55%), Postives = 106/119 (89.08%), Query Frame = 0 

Query: 41  REVLAENSRVGDRWTCINMSLACLVCNSVESPSHSFRSYSVSSSDNDGRCTAMANCLIWR 100
           R + A N RVGD W  INMSLACLVCNSVESPSHSFRSYSVSSSDN+GRC +MANCLIWR
Sbjct: 67  RTITAGNLRVGDWWRYINMSLACLVCNSVESPSHSFRSYSVSSSDNEGRCNSMANCLIWR 126

Query: 101 PSFPPTHHPSYAASAKVTPQPNIVNSDGMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 160
           PSFPPTHHPSYA SAKVTP PNIV SD MDG PRLVRSRAVRRDLVRDWNFDEVVVVQH
Sbjct: 127 PSFPPTHHPSYAESAKVTPHPNIVISDRMDGNPRLVRSRAVRRDLVRDWNFDEVVVVQH 185

[Close]
BLAST of Spg009488 vs. NCBI nr
Match: XP_004139698.1 (uncharacterized protein LOC101218997 [Cucumis sativus] >KGN44437.1 hypothetical protein Csa_015635 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 4.8e-47
Identity = 94/101 (93.07%), Postives = 98/101 (97.03%), Query Frame = 0 

Query: 59  MSLACLVCNSVESPSHSFRSYSVSSSDNDGRCTAMANCLIWRPSFPPTHHPSYAASAKVT 118
           MSLACLVCNSVESPSHSFRSYSVSSSDN+GRC+AMANCLIWRPSFPPTHHPSYAASAKVT
Sbjct: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60

Query: 119 PQPNIVNSDGMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 160
           PQP + +SD MDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH
Sbjct: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 101

[Close]
BLAST of Spg009488 vs. NCBI nr
Match: XP_016902709.1 (PREDICTED: uncharacterized protein LOC103500045 [Cucumis melo])

HSP 1 Score: 198.4 bits (503), Expect = 4.8e-47
Identity = 94/101 (93.07%), Postives = 98/101 (97.03%), Query Frame = 0 

Query: 59  MSLACLVCNSVESPSHSFRSYSVSSSDNDGRCTAMANCLIWRPSFPPTHHPSYAASAKVT 118
           MSLACLVCNSVESPSHSFRSYSVSSSDN+GRC+AMANCLIWRPSFPPTHHPSYAASAKVT
Sbjct: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60

Query: 119 PQPNIVNSDGMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 160
           PQP I NS+ MDGTPRLVRSRAV+RDLVRDWNFDEVVVVQH
Sbjct: 61  PQPTISNSNVMDGTPRLVRSRAVKRDLVRDWNFDEVVVVQH 101

[Close]
BLAST of Spg009488 vs. NCBI nr
Match: XP_023522659.1 (uncharacterized protein LOC111786655 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 197.6 bits (501), Expect = 8.2e-47
Identity = 94/101 (93.07%), Postives = 96/101 (95.05%), Query Frame = 0 

Query: 59  MSLACLVCNSVESPSHSFRSYSVSSSDNDGRCTAMANCLIWRPSFPPTHHPSYAASAKVT 118
           MSLACLVCNSVESPSHSFRSYSVSSSDN+GRC +MANCLIWRPSFPPTHHPSYAASAKVT
Sbjct: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCNSMANCLIWRPSFPPTHHPSYAASAKVT 60

Query: 119 PQPNIVNSDGMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 160
           P PNIV SD MDG PRLVRSRAVRRDLVRDWNFDEVVVVQH
Sbjct: 61  PHPNIVISDRMDGNPRLVRSRAVRRDLVRDWNFDEVVVVQH 101

[Close]
BLAST of Spg009488 vs. ExPASy TrEMBL
Match: A0A0A0K7X5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290600 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.3e-47
Identity = 94/101 (93.07%), Postives = 98/101 (97.03%), Query Frame = 0 

Query: 59  MSLACLVCNSVESPSHSFRSYSVSSSDNDGRCTAMANCLIWRPSFPPTHHPSYAASAKVT 118
           MSLACLVCNSVESPSHSFRSYSVSSSDN+GRC+AMANCLIWRPSFPPTHHPSYAASAKVT
Sbjct: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60

Query: 119 PQPNIVNSDGMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 160
           PQP + +SD MDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH
Sbjct: 61  PQPTMSDSDVMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 101

[Close]
BLAST of Spg009488 vs. ExPASy TrEMBL
Match: A0A1S4E3A0 (uncharacterized protein LOC103500045 OS=Cucumis melo OX=3656 GN=LOC103500045 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.3e-47
Identity = 94/101 (93.07%), Postives = 98/101 (97.03%), Query Frame = 0 

Query: 59  MSLACLVCNSVESPSHSFRSYSVSSSDNDGRCTAMANCLIWRPSFPPTHHPSYAASAKVT 118
           MSLACLVCNSVESPSHSFRSYSVSSSDN+GRC+AMANCLIWRPSFPPTHHPSYAASAKVT
Sbjct: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLIWRPSFPPTHHPSYAASAKVT 60

Query: 119 PQPNIVNSDGMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 160
           PQP I NS+ MDGTPRLVRSRAV+RDLVRDWNFDEVVVVQH
Sbjct: 61  PQPTISNSNVMDGTPRLVRSRAVKRDLVRDWNFDEVVVVQH 101

[Close]
BLAST of Spg009488 vs. ExPASy TrEMBL
Match: A0A6J1F1B0 (uncharacterized protein LOC111438425 OS=Cucurbita moschata OX=3662 GN=LOC111438425 PE=4 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 2.0e-46
Identity = 93/101 (92.08%), Postives = 95/101 (94.06%), Query Frame = 0 

Query: 59  MSLACLVCNSVESPSHSFRSYSVSSSDNDGRCTAMANCLIWRPSFPPTHHPSYAASAKVT 118
           MSLACLVCNSVESPSHSFRSYSVSSSDN+GRC +MANCLIWRPSFPPTHHPSYAASAKVT
Sbjct: 1   MSLACLVCNSVESPSHSFRSYSVSSSDNEGRCNSMANCLIWRPSFPPTHHPSYAASAKVT 60

Query: 119 PQPNIVNSDGMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 160
           P PNIV SD MDG P LVRSRAVRRDLVRDWNFDEVVVVQH
Sbjct: 61  PHPNIVISDRMDGNPTLVRSRAVRRDLVRDWNFDEVVVVQH 101

[Close]
BLAST of Spg009488 vs. ExPASy TrEMBL
Match: A0A6J1C1C6 (uncharacterized protein LOC111007477 OS=Momordica charantia OX=3673 GN=LOC111007477 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 4.4e-46
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 0 

Query: 59  MSLACLVCNSVESPSHSFRSYSVSSSDNDGRCTAMANCLIWRPSFPPT-HHPSYAASAKV 118
           MSLAC+VCNSVESPSHSFRSYSVSSSDN+GRC+AMANCL+WRPSFPPT HHPSYAASAKV
Sbjct: 1   MSLACIVCNSVESPSHSFRSYSVSSSDNEGRCSAMANCLVWRPSFPPTHHHPSYAASAKV 60

Query: 119 TPQPNIVNSDGMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 160
           TPQP I NS+G+DGTPRLVRSRAVRRDLVRDWNFDEV VVQH
Sbjct: 61  TPQPTITNSNGLDGTPRLVRSRAVRRDLVRDWNFDEVGVVQH 102

[Close]
BLAST of Spg009488 vs. ExPASy TrEMBL
Match: A0A6J1ID21 (uncharacterized protein LOC111471444 OS=Cucurbita maxima OX=3661 GN=LOC111471444 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 8.2e-45
Identity = 90/101 (89.11%), Postives = 94/101 (93.07%), Query Frame = 0 

Query: 59  MSLACLVCNSVESPSHSFRSYSVSSSDNDGRCTAMANCLIWRPSFPPTHHPSYAASAKVT 118
           MSL CLVCNSVESPSHS RSYSVSSSDN+GRC++MANCLIWRPSFPPTHHPSYAASAKVT
Sbjct: 1   MSLTCLVCNSVESPSHSSRSYSVSSSDNEGRCSSMANCLIWRPSFPPTHHPSYAASAKVT 60

Query: 119 PQPNIVNSDGMDGTPRLVRSRAVRRDLVRDWNFDEVVVVQH 160
           P PNIV SD MDG PRLVRSRAVRRDLVRDWNFD VVVV+H
Sbjct: 61  PHPNIVISDRMDGAPRLVRSRAVRRDLVRDWNFDAVVVVEH 101

[Close]
BLAST of Spg009488 vs. TAIR 10
Match: AT1G71865.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 33 Blast hits to 33 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 122.5 bits (306), Expect = 3.1e-28
Identity = 62/97 (63.92%), Postives = 76/97 (78.35%), Query Frame = 0 

Query: 59  MSLACLVCNSVESPSHSFRSYSVSSSDNDGRCTAMANCLIWRPSFPPTH-HPSYAASAKV 118
           MS ACLVC+SVESPSHSFRSYSVSSSDN+GRC+ +A+CL  +        +P  A+S+KV
Sbjct: 1   MSFACLVCHSVESPSHSFRSYSVSSSDNEGRCSVIASCLTRKSLIQAARSNPFPASSSKV 60

Query: 119 TPQPNIVNSDGMDGTPRLVRSRAVRRDLVRDWNFDEV 155
           TPQPN    +G   +PRLVRSRAVRRD+VRDWNF+E+
Sbjct: 61  TPQPNFQAGEG--ASPRLVRSRAVRRDIVRDWNFNEI 95

The following BLAST results are available for this feature:
BLAST of Spg009488 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7037221.19.0e-5472.33hypothetical protein SDJN02_00844, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6607600.13.8e-5286.55hypothetical protein SDJN03_00942, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_004139698.14.8e-4793.07uncharacterized protein LOC101218997 [Cucumis sativus] >KGN44437.1 hypothetical ... [more]
XP_016902709.14.8e-4793.07PREDICTED: uncharacterized protein LOC103500045 [Cucumis melo][more]
XP_023522659.18.2e-4793.07uncharacterized protein LOC111786655 [Cucurbita pepo subsp. pepo][more]
BLAST of Spg009488 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg009488 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K7X52.3e-4793.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G290600 PE=4 SV=1[more]
A0A1S4E3A02.3e-4793.07uncharacterized protein LOC103500045 OS=Cucumis melo OX=3656 GN=LOC103500045 PE=... [more]
A0A6J1F1B02.0e-4692.08uncharacterized protein LOC111438425 OS=Cucurbita moschata OX=3662 GN=LOC1114384... [more]
A0A6J1C1C64.4e-4690.20uncharacterized protein LOC111007477 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
A0A6J1ID218.2e-4589.11uncharacterized protein LOC111471444 OS=Cucurbita maxima OX=3661 GN=LOC111471444... [more]
BLAST of Spg009488 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G71865.13.1e-2863.92unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR36002:SF1PYRDcoord: 50..157
NoneNo IPR availablePANTHERPTHR36002PYRDcoord: 50..157

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg009488.1Spg009488.1mRNA