Spg009487 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg009487
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease P
Location	scaffold9: 25712864 .. 25713873 (-)
RNA-Seq Expression	Spg009487
Synteny	Spg009487

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGAGGTTTAAGAACCGATACTTGGTGCTCGAAGTTCTGTTGGATCCCAATAAAGACATTGCAGCATATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAGCATTCTTCTCAACTTCGGAGCGTGTGGTTTTGCGTCCTCACTTGGATCTTTTCAAGGTAGATTAACTGTATCTTTCTTCCACTTCCATTTGTCTTAACAACGTATCTCTGTATTTGTATGGCTTAATGGTTTTTTCTTGCTTTCATGGTGTTTATTTAGTTAGTTATGTAAATCCAATCACGAAGTTGTGTATTATTAGAGCCTCGAGAGAGGACTACCAAAATGTCTGGGCTGCAATTACCATGGTGAGGACTATCAGCAATTGCCCTGTTGTATTTAATCTACTGGACCTAAGTGGTGAGTTTGTCTTTTGGATCATCATTTATGTTATTCACTCTTTCAATTTGACTATAGACAATTGTGCTTGAAGGATATAATCAGAGAGTGACATGAAAAGTTTGAACTCTTCTTCCTTTACGCATTTATTCATCTTCTGGATTTAGAAAAGAAAAGGAGGGAGTGGTCAATGGGATTGGCCTAGTTGGTCTATGAATAGGAAAGGGCTTAGAAGCTAGGAATGGGTCCTCAAACCATAGTGACCGCTTATCTAAGAATTAATATCAACTTACCTTGGCAACCAAATATAGTTGGATTTGGCAATTATCATAGTTGATGTCCACATAAACTGGCTCCAACACTCGTGGATATTAAAAAAAAAAAGCTCTAGTATGTCTGGCACCGTGATTTCTAGCTGCGGATGGAATGGAAAAAATGACATTGAATATCGTTTATTTTACAGGAAATACAAGGGCTTGCAAAAACACTGCCTTGAGGTTGGATGAATTGAAGTTTGAGCGATACAAGCTTATGGTTGGACCTCATCTCTCTGATGATGTCAATCAGCAAATGCACAACTGTCTTGAGAAGATAAAAACTTTAGAGCAGTGA

mRNA sequence

ATGTTGAGGTTTAAGAACCGATACTTGGTGCTCGAAGTTCTGTTGGATCCCAATAAAGACATTGCAGCATATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAGCATTCTTCTCAACTTCGGAGCGTGTGGTTTTGCGTCCTCACTTGGATCTTTTCAAGGAAATACAAGGGCTTGCAAAAACACTGCCTTGAGGTTGGATGAATTGAAGTTTGAGCGATACAAGCTTATGGTTGGACCTCATCTCTCTGATGATGTCAATCAGCAAATGCACAACTGTCTTGAGAAGATAAAAACTTTAGAGCAGTGA

Coding sequence (CDS)

ATGTTGAGGTTTAAGAACCGATACTTGGTGCTCGAAGTTCTGTTGGATCCCAATAAAGACATTGCAGCATATGATCCTATTATCATTACCCAATATAATGTTTCAAAAGCAATCAAGGACAGCATTCTTCTCAACTTCGGAGCGTGTGGTTTTGCGTCCTCACTTGGATCTTTTCAAGGAAATACAAGGGCTTGCAAAAACACTGCCTTGAGGTTGGATGAATTGAAGTTTGAGCGATACAAGCTTATGGTTGGACCTCATCTCTCTGATGATGTCAATCAGCAAATGCACAACTGTCTTGAGAAGATAAAAACTTTAGAGCAGTGA

Protein sequence

MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQGNTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLEQ

Homology

[Close]

BLAST of Spg009487 vs. NCBI nr
Match: XP_023524475.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 164.9 bits (416), Expect = 4.0e-37
Identity = 90/153 (58.82%), Postives = 99/153 (64.71%), Query Frame = 0


Query: 1   MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ- 60
           M+ FKNRYLV EV LDPNKD+A  DPIIITQYNVSKAIKDSILLNFG CGFASSLGSFQ 
Sbjct: 1   MVSFKNRYLVFEVALDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  ---------------------------------------------GNTRACKNTALRLDE 108
                                                        GN+RACKNTALR+DE
Sbjct: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRVDE 120

[Close]

BLAST of Spg009487 vs. NCBI nr
Match: XP_017974726.1 (PREDICTED: probable ribonuclease P/MRP protein subunit POP5 isoform X2 [Theobroma cacao])

HSP 1 Score: 162.5 bits (410), Expect = 2.0e-36
Identity = 78/107 (72.90%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQG 60
           M+ FKNRY+V+EV LDPNK+    DPI++TQ+N+SKAIKDSIL+NFG CG ASSLGSFQG
Sbjct: 1   MVGFKNRYMVMEVFLDPNKENLGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQG 60

Query: 61  NTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE 108
           + RACKNTAL+ DELKFE+YKLMVG  LS DV Q M NCLEKIK LE
Sbjct: 61  SIRACKNTALKCDELKFEQYKLMVGARLSADVTQHMQNCLEKIKILE 107

[Close]

BLAST of Spg009487 vs. NCBI nr
Match: XP_022972913.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima])

HSP 1 Score: 162.2 bits (409), Expect = 2.6e-36
Identity = 89/153 (58.17%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ- 60
           M+ FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKDSILLNFG CGFASSLGSFQ 
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  ---------------------------------------------GNTRACKNTALRLDE 108
                                                        GN+RACKNTALR+DE
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRVDE 120

[Close]

BLAST of Spg009487 vs. NCBI nr
Match: MBA0847030.1 (hypothetical protein [Gossypium schwendimanii])

HSP 1 Score: 162.2 bits (409), Expect = 2.6e-36
Identity = 77/107 (71.96%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQG 60
           M+ FKNRY+V+EVLLDPNKDI+  DPI++TQ+N+SKAIKDSIL+NFG CG ASSLGSFQG
Sbjct: 1   MVGFKNRYMVMEVLLDPNKDISGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQG 60

Query: 61  NTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE 108
           N +ACK  AL+ DELKFE+YKLMVG  L  DV Q M NCLEKI+ LE
Sbjct: 61  NIKACKTAALKCDELKFEQYKLMVGERLLADVTQHMQNCLEKIRILE 107

[Close]

BLAST of Spg009487 vs. NCBI nr
Match: XP_022932062.1 (probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata] >KAG6607595.1 putative ribonuclease P/MRP protein subunit POP5, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037218.1 putative ribonuclease P/MRP protein subunit POP5, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 161.8 bits (408), Expect = 3.4e-36
Identity = 89/153 (58.17%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ- 60
           M+ FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKDSILLNFG CGFASSLGSFQ 
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  ---------------------------------------------GNTRACKNTALRLDE 108
                                                        GN+RACKNTALRLDE
Sbjct: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120

[Close]

BLAST of Spg009487 vs. ExPASy Swiss-Prot
Match: Q6AWV1 (Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana OX=3702 GN=EMB1687 PE=1 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.9e-19
Identity = 62/154 (40.26%), Postives = 81/154 (52.60%), Query Frame = 0


Query: 1   MLRFKNRYLVLEVLLDPNKDIAAY-DPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ 60
           M+ FKNRY+++EV LDP+KD+     PII+TQ+N+SKAIKDSIL+NFG CG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  ----------------------------------------------GNTRACKNTALRLD 108
                                                         G  RAC++TAL+ D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

[Close]

BLAST of Spg009487 vs. ExPASy TrEMBL
Match: A0A6J1IBH7 (Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111471425 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36
Identity = 89/153 (58.17%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ- 60
           M+ FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKDSILLNFG CGFASSLGSFQ 
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  ---------------------------------------------GNTRACKNTALRLDE 108
                                                        GN+RACKNTALR+DE
Sbjct: 61  KYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRVDE 120

[Close]

BLAST of Spg009487 vs. ExPASy TrEMBL
Match: A0A7J9KKS9 (Ribonuclease P OS=Gossypium schwendimanii OX=34291 GN=Goshw_011417 PE=3 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.2e-36
Identity = 77/107 (71.96%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQG 60
           M+ FKNRY+V+EVLLDPNKDI+  DPI++TQ+N+SKAIKDSIL+NFG CG ASSLGSFQG
Sbjct: 1   MVGFKNRYMVMEVLLDPNKDISGDDPIVVTQFNISKAIKDSILVNFGECGLASSLGSFQG 60

Query: 61  NTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE 108
           N +ACK  AL+ DELKFE+YKLMVG  L  DV Q M NCLEKI+ LE
Sbjct: 61  NIKACKTAALKCDELKFEQYKLMVGERLLADVTQHMQNCLEKIRILE 107

[Close]

BLAST of Spg009487 vs. ExPASy TrEMBL
Match: A0A6J1EVL4 (Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111438386 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.6e-36
Identity = 89/153 (58.17%), Postives = 98/153 (64.05%), Query Frame = 0


Query: 1   MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ- 60
           M+ FKNRYLV EV+LDPNKD+A  DPIIITQYNVSKAIKDSILLNFG CGFASSLGSFQ 
Sbjct: 1   MVSFKNRYLVFEVVLDPNKDVATDDPIIITQYNVSKAIKDSILLNFGECGFASSLGSFQV 60

Query: 61  ---------------------------------------------GNTRACKNTALRLDE 108
                                                        GN+RACKNTALRLDE
Sbjct: 61  RYVNPITKLCIIRASREDYQNVWAAITMVRSISNCPVVFNLLDLTGNSRACKNTALRLDE 120

[Close]

BLAST of Spg009487 vs. ExPASy TrEMBL
Match: A0A7J9KNX4 (Ribonuclease P OS=Gossypium schwendimanii OX=34291 GN=Goshw_029544 PE=3 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.8e-35
Identity = 75/108 (69.44%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQG 60
           M+ FKNRY+V+EVLLDPNK+I+  DPI++TQ+N+SKAIKD IL+NFG CG ASSLGSFQG
Sbjct: 1   MVGFKNRYMVMEVLLDPNKEISGDDPIVVTQFNISKAIKDGILVNFGECGLASSLGSFQG 60

Query: 61  NTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLEQ 109
           + +ACK   L+ DELKFE+YKLMVG  LS DV Q M NCLEKI+ LEQ
Sbjct: 61  SIKACKTATLKCDELKFEQYKLMVGACLSADVTQHMQNCLEKIRILEQ 108

[Close]

BLAST of Spg009487 vs. ExPASy TrEMBL
Match: A0A058ZYW8 (Ribonuclease P OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K00475 PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 3.4e-34
Identity = 73/107 (68.22%), Postives = 89/107 (83.18%), Query Frame = 0


Query: 1   MLRFKNRYLVLEVLLDPNKDIAAYDPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQG 60
           M+ FKNRY+V+EV LDPN+++   DPII+TQ+NVSKAI+DSIL+NFG CG ASSLGSFQG
Sbjct: 62  MVGFKNRYMVMEVFLDPNRELGVDDPIILTQFNVSKAIRDSILVNFGECGLASSLGSFQG 121

Query: 61  NTRACKNTALRLDELKFERYKLMVGPHLSDDVNQQMHNCLEKIKTLE 108
           + +ACK  AL+ DELKFE+YKL+ G  LS +V QQMHNC EKIK LE
Sbjct: 122 SIKACKKAALKCDELKFEQYKLVSGSRLSPEVIQQMHNCQEKIKILE 168

[Close]

BLAST of Spg009487 vs. TAIR 10
Match: AT1G04635.1 (ribonuclease P family protein / Rpp14 family protein )

HSP 1 Score: 95.5 bits (236), Expect = 2.8e-20
Identity = 62/154 (40.26%), Postives = 81/154 (52.60%), Query Frame = 0


Query: 1   MLRFKNRYLVLEVLLDPNKDIAAY-DPIIITQYNVSKAIKDSILLNFGACGFASSLGSFQ 60
           M+ FKNRY+++EV LDP+KD+     PII+TQ+N+SKAIKDSIL+NFG CG  SSLGSFQ
Sbjct: 1   MVGFKNRYMLMEVFLDPDKDLLGEGTPIILTQFNLSKAIKDSILVNFGECGLGSSLGSFQ 60

Query: 61  ----------------------------------------------GNTRACKNTALRLD 108
                                                         G  RAC++TAL+ D
Sbjct: 61  VKYVNPITKLCIVRSSREEHRQVWLAITLVKSIGNCPVILNLLDISGCIRACRDTALKCD 120

The following BLAST results are available for this feature:

BLAST of Spg009487 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023524475.1	4.0e-37	58.82	probable ribonuclease P/MRP protein subunit POP5 [Cucurbita pepo subsp. pepo]	[more]
XP_017974726.1	2.0e-36	72.90	PREDICTED: probable ribonuclease P/MRP protein subunit POP5 isoform X2 [Theobrom...	[more]
XP_022972913.1	2.6e-36	58.17	probable ribonuclease P/MRP protein subunit POP5 [Cucurbita maxima]	[more]
MBA0847030.1	2.6e-36	71.96	hypothetical protein [Gossypium schwendimanii]	[more]
XP_022932062.1	3.4e-36	58.17	probable ribonuclease P/MRP protein subunit POP5 [Cucurbita moschata] >KAG660759...	[more]

BLAST of Spg009487 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6AWV1	3.9e-19	40.26	Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana OX=3702...	[more]

BLAST of Spg009487 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IBH7	1.2e-36	58.17	Ribonuclease P OS=Cucurbita maxima OX=3661 GN=LOC111471425 PE=3 SV=1	[more]
A0A7J9KKS9	1.2e-36	71.96	Ribonuclease P OS=Gossypium schwendimanii OX=34291 GN=Goshw_011417 PE=3 SV=1	[more]
A0A6J1EVL4	1.6e-36	58.17	Ribonuclease P OS=Cucurbita moschata OX=3662 GN=LOC111438386 PE=3 SV=1	[more]
A0A7J9KNX4	1.8e-35	69.44	Ribonuclease P OS=Gossypium schwendimanii OX=34291 GN=Goshw_029544 PE=3 SV=1	[more]
A0A058ZYW8	3.4e-34	68.22	Ribonuclease P OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_K00475 PE=3 SV=1	[more]

BLAST of Spg009487 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G04635.1	2.8e-20	40.26	ribonuclease P family protein / Rpp14 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038085	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	GENE3D	3.30.70.3250	Ribonuclease P, Pop5 subunit	coord: 1..74 e-value: 1.6E-7 score: 33.3
IPR038085	RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamily	SUPERFAMILY	160350	Rnp2-like	coord: 1..53
None	No IPR available	PANTHER	PTHR10993:SF12	RIBONUCLEASE P/MRP PROTEIN SUBUNIT POP5	coord: 1..59
None	No IPR available	PANTHER	PTHR10993	OCTANOYLTRANSFERASE	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg009487.1	Spg009487.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0001682	tRNA 5'-leader removal
cellular_component	GO:0030677	ribonuclease P complex
molecular_function	GO:0004526	ribonuclease P activity