Spg008963 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008963
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CCHC-type domain-containing protein
Location	scaffold11: 11089249 .. 11090937 (+)
RNA-Seq Expression	Spg008963
Synteny	Spg008963

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACTTTAGGGACAGAGTGAAGGAGGAGAAAGAAGAAGAATTTCTTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATTCAAGGCCAGCCATTGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGGATCAAGAGGTGAGGTTTGATTTTCTTGAAAGTTAGTTCATTTTCTAACAAATTTCATGAAGGAAGCTTGACCTAAATTGTATGAGAAGTTGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTATCTACAACTTTCATGAAGATTTAGTGAGCCAAAAATTACTTTAAGCAGGTTTAATTTCAGGAGGAAGATAAAGGATAACAGAGAAGCTCGAATCTGTGTTGTCTAATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCATTTTTCATTTCTTGAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAGTTTTGGTTAAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAGAGTAGAGTGTGAATGTGGTTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGTTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGCTAAGACAGTGAGTGACAAAATGAATTTCGAAAATGGTTTCCAACGGTTGTACATGTTTAGAAGTTTTATACGCTTTTCTATGAATGATACATGATTCTATGAACGGTTTCAAGCATAAGTTTTGAGCTTAGATTTTCTAACGAGGTTTATATACGAGCACATGGCTAATGACTTTATGAAAAGTAGCTGAAATGATATCCTTTAAAGTAAAGTATGTGTTAGCAAGTATTGTTTAATGATTTAAAGTTTTTCACGAGCAAGCTGAGTAAGCTTGAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATATTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATGTTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGATTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTATTTCATATGCCTTGCTAGATTTTTAATGACAAACTTGCAAGATATTTTAGAAAGCCTTTTCCATTACACGTTTATGTTAAATGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTAGCACGTGTTTTGACTTCCGGATTTAGAGTTTTAAAGTCAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCACTTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACG

mRNA sequence

CACTTTAGGGACAGAGTGAAGGAGGAGAAAGAAGAAGAATTTCTTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATTCAAGGCCAGCCATTGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGGATCAAGAGGTGAGGATAACAGAGAAGCTCGAATCTGTGTTGTCTAATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCATTTTTCATTTCTTGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACG

Coding sequence (CDS)

CACTTTAGGGACAGAGTGAAGGAGGAGAAAGAAGAAGAATTTCTTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATTCAAGGCCAGCCATTGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTGTTTTAGTCGGTTTGAGCTACACAGAAGGGATCAAGAGGTGAGGATAACAGAGAAGCTCGAATCTGTGTTGTCTAATTTCGGGGCATTTCTGGACAAATTGGTTGGGAATCTCATTTTTCATTTCTTGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGCTAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCTAGATCAAGCTCCAGTACG

Protein sequence

HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRICVQPVNLWCFSRFELHRRDQEVRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST

Homology

[Close]

BLAST of Spg008963 vs. NCBI nr
Match: KAA0040575.1 (putative integrase [Cucumis melo var. makuwa] >TYK05618.1 putative integrase [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.4e-09
Identity = 61/135 (45.19%), Postives = 69/135 (51.11%), Query Frame = 0


Query: 1   HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRICVQPVNLWCF-------SRFELHRRD 60
           HF +RVKEE EEEF GLRLKKIGKSS  ASHCRI VQ      F       S  E+H+ +
Sbjct: 54  HFEERVKEE-EEEFRGLRLKKIGKSSCNASHCRIWVQLSTSGGFLVFSDALSILEVHKSN 113

Query: 61  QEVRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSSLQTGELAKT----------- 112
           Q++ +   L     +F   LD   G      L  RGNR SLQ GEL KT           
Sbjct: 114 QKLCLMNWLR---ISFSFLLDIESGKSGKWDL--RGNRPSLQIGELDKTVIFPLSTFCVL 173

[Close]

BLAST of Spg008963 vs. NCBI nr
Match: KAA0062263.1 (hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 71.6 bits (174), Expect = 5.3e-09
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 71  AFLDKLVGNLIF----------HFLRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESS 127
           A LD+LV NL+F          +   PRGNR SLQ G+L KTVEIELP+PDTLPTS+ESS
Sbjct: 65  AILDELVANLVFISSVRISNLENLEMPRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESS 124

[Close]

BLAST of Spg008963 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 9.1e-09
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 62  LESVLSNFGAFLDKLVGNLIFH---FLRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAE 121
           LE +      FL K  G L+F     + PRGNR +L TG+L KTVEIELPVPDTLPTSAE
Sbjct: 51  LEELRGESTRFLSKSGGFLVFSDALSILPRGNRPNLHTGKLDKTVEIELPVPDTLPTSAE 110

Query: 122 SSRSSSST 127
           SS+S+SST
Sbjct: 111 SSKSNSST 118

[Close]

BLAST of Spg008963 vs. NCBI nr
Match: TYK08801.1 (hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa])

HSP 1 Score: 68.9 bits (167), Expect = 3.5e-08
Identity = 52/112 (46.43%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 1   HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRI-----CVQPVNLWCFSRFELHRRDQE 60
           HF +RVKEE EEEF GLRLKKIGKSS KA+HCRI       +P     FS          
Sbjct: 75  HFEERVKEE-EEEFRGLRLKKIGKSSCKANHCRIWSTGFSSKPRGFLVFS---------- 134

Query: 61  VRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSSLQTGELAKTVEIEL 108
                 LE   SN   + D   G      + PRGNRSSLQTG+L K +EI +
Sbjct: 135 -DALSILEVQKSNQKLYWDIESGKSGKWDVMPRGNRSSLQTGQLDK-IEISI 173

[Close]

BLAST of Spg008963 vs. NCBI nr
Match: TYJ96965.1 (uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 65.1 bits (157), Expect = 5.0e-07
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 87  PRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST 127
           PRGNR S QTG+L KTVEIELPVPDTLPTSAESS S+SST
Sbjct: 137 PRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSGSNSST 176

[Close]

BLAST of Spg008963 vs. ExPASy TrEMBL
Match: A0A5A7TGM2 (Putative integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00750 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.8e-10
Identity = 61/135 (45.19%), Postives = 69/135 (51.11%), Query Frame = 0


Query: 1   HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRICVQPVNLWCF-------SRFELHRRD 60
           HF +RVKEE EEEF GLRLKKIGKSS  ASHCRI VQ      F       S  E+H+ +
Sbjct: 54  HFEERVKEE-EEEFRGLRLKKIGKSSCNASHCRIWVQLSTSGGFLVFSDALSILEVHKSN 113

Query: 61  QEVRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSSLQTGELAKT----------- 112
           Q++ +   L     +F   LD   G      L  RGNR SLQ GEL KT           
Sbjct: 114 QKLCLMNWLR---ISFSFLLDIESGKSGKWDL--RGNRPSLQIGELDKTVIFPLSTFCVL 173

[Close]

BLAST of Spg008963 vs. ExPASy TrEMBL
Match: A0A5A7V2F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00320 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.6e-09
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 0


Query: 71  AFLDKLVGNLIF----------HFLRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAESS 127
           A LD+LV NL+F          +   PRGNR SLQ G+L KTVEIELP+PDTLPTS+ESS
Sbjct: 65  AILDELVANLVFISSVRISNLENLEMPRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESS 124

[Close]

BLAST of Spg008963 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.4e-09
Identity = 41/68 (60.29%), Postives = 48/68 (70.59%), Query Frame = 0


Query: 62  LESVLSNFGAFLDKLVGNLIFH---FLRPRGNRSSLQTGELAKTVEIELPVPDTLPTSAE 121
           LE +      FL K  G L+F     + PRGNR +L TG+L KTVEIELPVPDTLPTSAE
Sbjct: 51  LEELRGESTRFLSKSGGFLVFSDALSILPRGNRPNLHTGKLDKTVEIELPVPDTLPTSAE 110

Query: 122 SSRSSSST 127
           SS+S+SST
Sbjct: 111 SSKSNSST 118

[Close]

BLAST of Spg008963 vs. ExPASy TrEMBL
Match: A0A5D3CAC6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold796G00040 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.7e-08
Identity = 52/112 (46.43%), Postives = 60/112 (53.57%), Query Frame = 0


Query: 1   HFRDRVKEEKEEEFLGLRLKKIGKSSFKASHCRI-----CVQPVNLWCFSRFELHRRDQE 60
           HF +RVKEE EEEF GLRLKKIGKSS KA+HCRI       +P     FS          
Sbjct: 75  HFEERVKEE-EEEFRGLRLKKIGKSSCKANHCRIWSTGFSSKPRGFLVFS---------- 134

Query: 61  VRITEKLESVLSNFGAFLDKLVGNLIFHFLRPRGNRSSLQTGELAKTVEIEL 108
                 LE   SN   + D   G      + PRGNRSSLQTG+L K +EI +
Sbjct: 135 -DALSILEVQKSNQKLYWDIESGKSGKWDVMPRGNRSSLQTGQLDK-IEISI 173

[Close]

BLAST of Spg008963 vs. ExPASy TrEMBL
Match: A0A5D3BET3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold506G00070 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.4e-07
Identity = 34/40 (85.00%), Postives = 36/40 (90.00%), Query Frame = 0


Query: 87  PRGNRSSLQTGELAKTVEIELPVPDTLPTSAESSRSSSST 127
           PRGNR S QTG+L KTVEIELPVPDTLPTSAESS S+SST
Sbjct: 137 PRGNRPSRQTGKLDKTVEIELPVPDTLPTSAESSGSNSST 176

The following BLAST results are available for this feature:

BLAST of Spg008963 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040575.1	1.4e-09	45.19	putative integrase [Cucumis melo var. makuwa] >TYK05618.1 putative integrase [Cu...	[more]
KAA0062263.1	5.3e-09	60.61	hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]	[more]
KAA0052218.1	9.1e-09	60.29	uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0...	[more]
TYK08801.1	3.5e-08	46.43	hypothetical protein E5676_scaffold796G00040 [Cucumis melo var. makuwa]	[more]
TYJ96965.1	5.0e-07	85.00	uncharacterized protein E5676_scaffold506G00070 [Cucumis melo var. makuwa]	[more]

BLAST of Spg008963 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008963 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TGM2	6.8e-10	45.19	Putative integrase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00...	[more]
A0A5A7V2F2	2.6e-09	60.61	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UAH6	4.4e-09	60.29	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3CAC6	1.7e-08	46.43	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3BET3	2.4e-07	85.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Spg008963 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008963.1	Spg008963.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016740	transferase activity