Spg008953 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008953
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Fanconi-associated nuclease
Location	scaffold11: 10922101 .. 10923395 (-)
RNA-Seq Expression	Spg008953
Synteny	Spg008953

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTAACTCCCAAAACTTCTCAGTTGCTGGTTATGCGGACGATGCCTCTCCTTCATCGCCGGAGGTTGAAGGCCCTATCCGAGACACCATTTCCTCCCCTAGTGAGGAAAATGAGAACCAAGCCGAAGCAGACCCCATGGAAACAGAAGAGCTCGAGGTCATCAACGTCGAACAAACTGCCATGGCCGAACCTTCCATTTCCGCAGCCAACCCCTCAGAGGTGCTCGATATTGCACCTCTAGACACCTCTACCTTCACCGTCCAACCCGTCACCCTCCAACTTGCCCAGAACATTTCCGTCCCTCGAAACCTAATCCCATTTCCTCCCCATTCCCTTCAGTACCCCTCCTTCTTCCTCCCCCAGATTTTTCAGCTTCACTCACATCAGACTCCGTCCCTTCATCTTCCTCTCCTCCCGCAAGCATTTCCCATCCACCATCCACCTCAGCGCAGCCCACTTCGCCGCAGTTTTCTGAGCAAGAAGTGGCCACATGGAACTCCCTGATGGGAGAATTTTGCGAGGAAGGCAAAGAAATTCATCTGCCAGAAGAACTAGAAAAGGCTGCCGCAAAGGAAACTGAATGCAAGGCCGCCGCAGATGAAAAAACGGCCAAAGAAAGAGAAGGCACCAGCAAGCCAGCGCAAGATCCGGTCACCGCAGAAATTGCCGCAACCAACTTAGCCATCATTGCGGCTGCGCTGGATGTAGAAGCTTCTGATTTCGAGGATGAGCTCCCCCTAACTCATCGCCGCAACATCCAGTTCGAAGGGGTAGTCATCCGAGAACCCTCTGAAAAACCTGCGGCGGCCCCAAGCAAGAAAAGGAAAGCGCCCACCGCATCCAAAGGTAAAGGAAAAGAAAAAGTGGGCGCAGGAAAAGAAAAAGTAGGCGCGGACTGGGGGAAGTTTCAAGAAGAACGAGGATTTAGCTGCACCCTCCCGCAAACAATGATAGATCAAATCTCCCAACGCAAGTGGGAAACAGTTTGCGAGAATCCCCGCTCCTACGCCTCTGCGCTAGTCCACGACTTCTACCGGACACAGTGGCAAGAAGAAGTCGACGAAGTTTTAGTGAGAGGCCACGCAGTCGCATTCTCCTCAGCATGCATCAACAATGTGTACGAGCTGCGAGATATCCCAAACGCAGAAGGGAATGCGCTCCTCGACTGCCTCGACGATGACTTCCTGAGTGCAATACTTCTTGCGGTAGCCCGACCTGGAGCCAAGTGGGACGGTCACGGCACGACGAGGACCCTGAAGTCGCAGCTGCTCGACTTTGAGGCTACCTACTAG

mRNA sequence

ATGTTTAACTCCCAAAACTTCTCAGTTGCTGGTTATGCGGACGATGCCTCTCCTTCATCGCCGGAGGTTGAAGGCCCTATCCGAGACACCATTTCCTCCCCTAGTGAGGAAAATGAGAACCAAGCCGAAGCAGACCCCATGGAAACAGAAGAGCTCGAGGTCATCAACGTCGAACAAACTGCCATGGCCGAACCTTCCATTTCCGCAGCCAACCCCTCAGAGCCCACTTCGCCGCAGTTTTCTGAGCAAGAAGTGGCCACATGGAACTCCCTGATGGGAGAATTTTGCGAGGAAGGCAAAGAAATTCATCTGCCAGAAGAACTAGAAAAGGCTGCCGCAAAGGAAACTGAATGCAAGGCCGCCGCAGATGAAAAAACGGCCAAAGAAAGAGAAGGCACCAGCAAGCCAGCGCAAGATCCGGTCACCGCAGAAATTGCCGCAACCAACTTAGCCATCATTGCGGCTGCGCTGGATGTAGAAGCTTCTGATTTCGAGGATGAGCTCCCCCTAACTCATCGCCGCAACATCCAGTTCGAAGGGGTAGTCATCCGAGAACCCTCTGAAAAACCTGCGGCGGCCCCAAGCAAGAAAAGGAAAGCGCCCACCGCATCCAAAGGTAAAGGAAAAGAAAAAGTGGGCGCAGGAAAAGAAAAAGTAGGCGCGGACTGGGGGAAGTTTCAAGAAGAACGAGGATTTAGCTGCACCCTCCCGCAAACAATGATAGATCAAATCTCCCAACGCAAGTGGGAAACAGTTTGCGAGAATCCCCGCTCCTACGCCTCTGCGCTAGTCCACGACTTCTACCGGACACAGTGGCAAGAAGAAGTCGACGAAGTTTTAGTGAGAGGCCACGCAGTCGCATTCTCCTCAGCATGCATCAACAATGTGTACGAGCTGCGAGATATCCCAAACGCAGAAGGGAATGCGCTCCTCGACTGCCTCGACGATGACTTCCTGAGTGCAATACTTCTTGCGGTAGCCCGACCTGGAGCCAAGTGGGACGGTCACGGCACGACGAGGACCCTGAAGTCGCAGCTGCTCGACTTTGAGGCTACCTACTAG

Coding sequence (CDS)

ATGTTTAACTCCCAAAACTTCTCAGTTGCTGGTTATGCGGACGATGCCTCTCCTTCATCGCCGGAGGTTGAAGGCCCTATCCGAGACACCATTTCCTCCCCTAGTGAGGAAAATGAGAACCAAGCCGAAGCAGACCCCATGGAAACAGAAGAGCTCGAGGTCATCAACGTCGAACAAACTGCCATGGCCGAACCTTCCATTTCCGCAGCCAACCCCTCAGAGCCCACTTCGCCGCAGTTTTCTGAGCAAGAAGTGGCCACATGGAACTCCCTGATGGGAGAATTTTGCGAGGAAGGCAAAGAAATTCATCTGCCAGAAGAACTAGAAAAGGCTGCCGCAAAGGAAACTGAATGCAAGGCCGCCGCAGATGAAAAAACGGCCAAAGAAAGAGAAGGCACCAGCAAGCCAGCGCAAGATCCGGTCACCGCAGAAATTGCCGCAACCAACTTAGCCATCATTGCGGCTGCGCTGGATGTAGAAGCTTCTGATTTCGAGGATGAGCTCCCCCTAACTCATCGCCGCAACATCCAGTTCGAAGGGGTAGTCATCCGAGAACCCTCTGAAAAACCTGCGGCGGCCCCAAGCAAGAAAAGGAAAGCGCCCACCGCATCCAAAGGTAAAGGAAAAGAAAAAGTGGGCGCAGGAAAAGAAAAAGTAGGCGCGGACTGGGGGAAGTTTCAAGAAGAACGAGGATTTAGCTGCACCCTCCCGCAAACAATGATAGATCAAATCTCCCAACGCAAGTGGGAAACAGTTTGCGAGAATCCCCGCTCCTACGCCTCTGCGCTAGTCCACGACTTCTACCGGACACAGTGGCAAGAAGAAGTCGACGAAGTTTTAGTGAGAGGCCACGCAGTCGCATTCTCCTCAGCATGCATCAACAATGTGTACGAGCTGCGAGATATCCCAAACGCAGAAGGGAATGCGCTCCTCGACTGCCTCGACGATGACTTCCTGAGTGCAATACTTCTTGCGGTAGCCCGACCTGGAGCCAAGTGGGACGGTCACGGCACGACGAGGACCCTGAAGTCGCAGCTGCTCGACTTTGAGGCTACCTACTAG

Protein sequence

MFNSQNFSVAGYADDASPSSPEVEGPIRDTISSPSEENENQAEADPMETEELEVINVEQTAMAEPSISAANPSEPTSPQFSEQEVATWNSLMGEFCEEGKEIHLPEELEKAAAKETECKAAADEKTAKEREGTSKPAQDPVTAEIAATNLAIIAAALDVEASDFEDELPLTHRRNIQFEGVVIREPSEKPAAAPSKKRKAPTASKGKGKEKVGAGKEKVGADWGKFQEERGFSCTLPQTMIDQISQRKWETVCENPRSYASALVHDFYRTQWQEEVDEVLVRGHAVAFSSACINNVYELRDIPNAEGNALLDCLDDDFLSAILLAVARPGAKWDGHGTTRTLKSQLLDFEATY

Homology

[Close]

BLAST of Spg008953 vs. NCBI nr
Match: XP_038898613.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida])

HSP 1 Score: 77.0 bits (188), Expect = 3.6e-10
Identity = 39/113 (34.51%), Postives = 60/113 (53.10%), Query Frame = 0


Query: 236 LPQTMIDQISQRKWETVCENPRSYASALVHDFYRTQWQEEVDEVLVRGHAVAFSSACINN 295
           LP  +   I +  W+T  + P      +VHDFYR    E  D V  +G  V FS+  IN 
Sbjct: 221 LPDLITSIIVEHGWDTFYQCPSIIVPQVVHDFYRGHLHENRDAVTFKGETVYFSTKNING 280

Query: 296 VYELRDIPNAEGNALLDCLDDDFLSAILLAVARPGAKWD-GHGTTRTLKSQLL 348
           +Y++RD P+A GN ++D   ++ +   L  +A+PG +W       RTL+S+ L
Sbjct: 281 LYQMRDNPDAPGNKIIDDPTEELMRNALKVLAQPGTRWTVSPKGIRTLESKSL 333

[Close]

BLAST of Spg008953 vs. NCBI nr
Match: KAF4378427.1 (hypothetical protein F8388_021621 [Cannabis sativa])

HSP 1 Score: 66.2 bits (160), Expect = 6.3e-07
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 235 TLPQTMIDQISQRKWETVCENPRSYASALVHDFYRTQWQEE-VDEVLVRGHAVAFSSACI 294
           ++P  +I+ I +RKWE +CE+P S    +V +FY      E   +++VR   V FS   I
Sbjct: 654 SMPPWLIENIKKRKWEGLCEDPASAVCQVVKEFYANFLASEWPADIIVREVKVPFSDKLI 713

Query: 295 NNVYELRDIPNAEGNALLDCLDDDFLSAILLAVARPGAKW--DGHGTTRTLKSQL 347
           N  ++L++I   E +     L D  +  I+  + +PGA+W  D HG  R  +S L
Sbjct: 714 NEFFQLKNI-TCEFSKCNSKLTDKLMHDIVPELVKPGAEWDIDEHGMFRFRRSDL 767

[Close]

BLAST of Spg008953 vs. NCBI nr
Match: KAB2048685.1 (hypothetical protein ES319_A13G128000v1 [Gossypium barbadense])

HSP 1 Score: 60.8 bits (146), Expect = 2.6e-05
Identity = 32/111 (28.83%), Postives = 57/111 (51.35%), Query Frame = 0


Query: 229 ERGFS------CTLPQTMIDQISQRKWETVCENPRSYASALVHDFYRTQWQEEVDEVLVR 288
           E+GF+        +P  +  +I+  KWE  C+        LV +FY +   ++  EV+VR
Sbjct: 39  EKGFNLKSYDLMVVPIPIRKKINALKWEQFCDARSLPNDELVQEFYASLTMQDAIEVIVR 98

Query: 289 GHAVAFSSACINNVYELRDIPNAEGNALLDCLDDDFLSAILLAVARPGAKW 334
              V  +S  IN+++ L D+   E   +++ ++ DFL  +L  V  PG++W
Sbjct: 99  KKKVPLTSKSINDLFNLPDVEEDEYYPMMNNINWDFLQQVLDVVTNPGSQW 149

[Close]

BLAST of Spg008953 vs. NCBI nr
Match: KAG4166144.1 (hypothetical protein ERO13_A13G112550v2 [Gossypium hirsutum])

HSP 1 Score: 60.5 bits (145), Expect = 3.5e-05
Identity = 32/111 (28.83%), Postives = 57/111 (51.35%), Query Frame = 0


Query: 229 ERGFS------CTLPQTMIDQISQRKWETVCENPRSYASALVHDFYRTQWQEEVDEVLVR 288
           E+GF+        +P  +  +I+  KWE  C+        LV +FY +   ++  EV+VR
Sbjct: 39  EKGFNLKSYDLMVVPIPIRKKINALKWEQFCDALSLPNDELVREFYASLTMQDAIEVIVR 98

Query: 289 GHAVAFSSACINNVYELRDIPNAEGNALLDCLDDDFLSAILLAVARPGAKW 334
              V  +S  IN+++ L D+   E   +++ ++ DFL  +L  V  PG++W
Sbjct: 99  KKKVPLTSKSINDLFNLPDVEEDEYYPMMNNINWDFLQQVLDVVTNPGSQW 149

[Close]

BLAST of Spg008953 vs. NCBI nr
Match: KAG4128712.1 (hypothetical protein ERO13_D09G037250v2 [Gossypium hirsutum])

HSP 1 Score: 60.1 bits (144), Expect = 4.5e-05
Identity = 32/111 (28.83%), Postives = 57/111 (51.35%), Query Frame = 0


Query: 229 ERGFS------CTLPQTMIDQISQRKWETVCENPRSYASALVHDFYRTQWQEEVDEVLVR 288
           E+GF         +P T+  +I+  KWE  C+        LV +FY +   ++  EV+VR
Sbjct: 39  EKGFDLKSNDLMVVPITIRKKINALKWERFCDARSLPNDELVREFYASLTMQDDTEVIVR 98

Query: 289 GHAVAFSSACINNVYELRDIPNAEGNALLDCLDDDFLSAILLAVARPGAKW 334
              V  +S  IN+++ L D+   +   +++ ++ DFL  +L  V  PG++W
Sbjct: 99  KKKVPLTSKSINDLFNLPDVEEDKYYPMMNNINWDFLQQMLDVVTNPGSQW 149

[Close]

BLAST of Spg008953 vs. ExPASy TrEMBL
Match: A0A7J6G6G2 (Fanconi-associated nuclease OS=Cannabis sativa OX=3483 GN=F8388_021621 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.0e-07
Identity = 38/115 (33.04%), Postives = 61/115 (53.04%), Query Frame = 0


Query: 235 TLPQTMIDQISQRKWETVCENPRSYASALVHDFYRTQWQEE-VDEVLVRGHAVAFSSACI 294
           ++P  +I+ I +RKWE +CE+P S    +V +FY      E   +++VR   V FS   I
Sbjct: 654 SMPPWLIENIKKRKWEGLCEDPASAVCQVVKEFYANFLASEWPADIIVREVKVPFSDKLI 713

Query: 295 NNVYELRDIPNAEGNALLDCLDDDFLSAILLAVARPGAKW--DGHGTTRTLKSQL 347
           N  ++L++I   E +     L D  +  I+  + +PGA+W  D HG  R  +S L
Sbjct: 714 NEFFQLKNI-TCEFSKCNSKLTDKLMHDIVPELVKPGAEWDIDEHGMFRFRRSDL 767

[Close]

BLAST of Spg008953 vs. ExPASy TrEMBL
Match: A0A5J5SYF7 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G128000v1 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-05
Identity = 32/111 (28.83%), Postives = 57/111 (51.35%), Query Frame = 0


Query: 229 ERGFS------CTLPQTMIDQISQRKWETVCENPRSYASALVHDFYRTQWQEEVDEVLVR 288
           E+GF+        +P  +  +I+  KWE  C+        LV +FY +   ++  EV+VR
Sbjct: 39  EKGFNLKSYDLMVVPIPIRKKINALKWEQFCDARSLPNDELVQEFYASLTMQDAIEVIVR 98

Query: 289 GHAVAFSSACINNVYELRDIPNAEGNALLDCLDDDFLSAILLAVARPGAKW 334
              V  +S  IN+++ L D+   E   +++ ++ DFL  +L  V  PG++W
Sbjct: 99  KKKVPLTSKSINDLFNLPDVEEDEYYPMMNNINWDFLQQVLDVVTNPGSQW 149

[Close]

BLAST of Spg008953 vs. ExPASy TrEMBL
Match: A0A5J5SRB5 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D01G155800v1 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.9e-05
Identity = 28/98 (28.57%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 236 LPQTMIDQISQRKWETVCENPRSYASALVHDFYRTQWQEEVDEVLVRGHAVAFSSACINN 295
           +P  +  +I+  KWE  C+        LV +FY +   ++  EV+VR   V  +S  IN+
Sbjct: 52  VPTPIRKKINALKWERFCDARSLLDDELVREFYASLTTQDATEVIVRKKNVPLTSKSIND 111

Query: 296 VYELRDIPNAEGNALLDCLDDDFLSAILLAVARPGAKW 334
           ++ L D+   E  ++++ ++ DFL  +L  V   G++W
Sbjct: 112 LFNLPDVEEDEYYSMMNNINRDFLQQVLDVVTNLGSQW 149

[Close]

BLAST of Spg008953 vs. ExPASy TrEMBL
Match: A0A5J5QTS9 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D07G168400v1 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.3e-05
Identity = 28/108 (25.93%), Postives = 55/108 (50.93%), Query Frame = 0


Query: 226 FQEERGFSCTLPQTMIDQISQRKWETVCENPRSYASALVHDFYRTQWQEEVDEVLVRGHA 285
           F+ E      +P ++ ++I    W   C+        LV +FY      + +EV+VR   
Sbjct: 43  FKFESNDKMVMPLSIRNKIDALNWNQFCDTRSMPEEELVLEFYTNLTTPDANEVIVRKKK 102

Query: 286 VAFSSACINNVYELRDIPNAEGNALLDCLDDDFLSAILLAVARPGAKW 334
           V  +S  I++++ L ++   E +A++  ++ DFL  +L  V+ PG++W
Sbjct: 103 VPLTSKPISDLFNLPNVEEDEYSAMMKNINWDFLQQVLNVVSNPGSQW 150

[Close]

BLAST of Spg008953 vs. ExPASy TrEMBL
Match: A0A5D2DRB2 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D01G168700v1 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.1e-04
Identity = 28/98 (28.57%), Postives = 52/98 (53.06%), Query Frame = 0


Query: 236 LPQTMIDQISQRKWETVCENPRSYASALVHDFYRTQWQEEVDEVLVRGHAVAFSSACINN 295
           +P  +  +I+  KWE  C+        LV +FY +   ++  EV+VR   V  +S  IN+
Sbjct: 52  VPTPIRKKINAFKWERFCDARSLLDDELVREFYASLTTQDATEVIVRKKNVPLTSKSIND 111

Query: 296 VYELRDIPNAEGNALLDCLDDDFLSAILLAVARPGAKW 334
           ++ L D+   E  ++++ ++ DFL  +L  V   G++W
Sbjct: 112 LFNLPDVEEDEYYSMMNNINWDFLQQVLDVVTNLGSQW 149

The following BLAST results are available for this feature:

BLAST of Spg008953 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898613.1	3.6e-10	34.51	LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida]	[more]
KAF4378427.1	6.3e-07	33.04	hypothetical protein F8388_021621 [Cannabis sativa]	[more]
KAB2048685.1	2.6e-05	28.83	hypothetical protein ES319_A13G128000v1 [Gossypium barbadense]	[more]
KAG4166144.1	3.5e-05	28.83	hypothetical protein ERO13_A13G112550v2 [Gossypium hirsutum]	[more]
KAG4128712.1	4.5e-05	28.83	hypothetical protein ERO13_D09G037250v2 [Gossypium hirsutum]	[more]

BLAST of Spg008953 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008953 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6G6G2	3.0e-07	33.04	Fanconi-associated nuclease OS=Cannabis sativa OX=3483 GN=F8388_021621 PE=3 SV=1	[more]
A0A5J5SYF7	1.3e-05	28.83	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_A13G128000v1 PE...	[more]
A0A5J5SRB5	4.9e-05	28.57	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D01G155800v1 PE...	[more]
A0A5J5QTS9	8.3e-05	25.93	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D07G168400v1 PE...	[more]
A0A5D2DRB2	1.1e-04	28.57	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D01G168700v1 PE=...	[more]

BLAST of Spg008953 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 111..131
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..135
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 115..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008953.1	Spg008953.1	mRNA