Spg008846 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008846
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold10: 36347597 .. 36347905 (+)
RNA-Seq ExpressionSpg008846
SyntenySpg008846
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTTTTCAGCAGCCAATCTAGTTTGTGCTGTTTTGGTAGCATCCATCGCTCTTAACCTTCCGCCGGAAACCACCGCAAACTCCGTCAACCTTTCTTCTCCGCCACCGGTACACAGCTCAGAGCCACGTCTCGAGAAATCATTGGACGCTGTAAAAGTTAGTTCGAAATACAAGCTTCGTCTTGCCTTTGCAGGCAAAAATGGAGATGATGAATCTGAATTACCACCATTATCGAGGGCTTTTCTTAAGCCAAGGTACCCTTGGCCAAAACGCTACGTCCCTAAATCTTCACCACCTCCATTCTAG

mRNA sequence

ATGGGGTTTTCAGCAGCCAATCTAGTTTGTGCTGTTTTGGTAGCATCCATCGCTCTTAACCTTCCGCCGGAAACCACCGCAAACTCCGTCAACCTTTCTTCTCCGCCACCGGTACACAGCTCAGAGCCACGTCTCGAGAAATCATTGGACGCTGTAAAAGTTAGTTCGAAATACAAGCTTCGTCTTGCCTTTGCAGGCAAAAATGGAGATGATGAATCTGAATTACCACCATTATCGAGGGCTTTTCTTAAGCCAAGGTACCCTTGGCCAAAACGCTACGTCCCTAAATCTTCACCACCTCCATTCTAG

Coding sequence (CDS)

ATGGGGTTTTCAGCAGCCAATCTAGTTTGTGCTGTTTTGGTAGCATCCATCGCTCTTAACCTTCCGCCGGAAACCACCGCAAACTCCGTCAACCTTTCTTCTCCGCCACCGGTACACAGCTCAGAGCCACGTCTCGAGAAATCATTGGACGCTGTAAAAGTTAGTTCGAAATACAAGCTTCGTCTTGCCTTTGCAGGCAAAAATGGAGATGATGAATCTGAATTACCACCATTATCGAGGGCTTTTCTTAAGCCAAGGTACCCTTGGCCAAAACGCTACGTCCCTAAATCTTCACCACCTCCATTCTAG

Protein sequence

MGFSAANLVCAVLVASIALNLPPETTANSVNLSSPPPVHSSEPRLEKSLDAVKVSSKYKLRLAFAGKNGDDESELPPLSRAFLKPRYPWPKRYVPKSSPPPF
Homology
BLAST of Spg008846 vs. NCBI nr
Match: KAG6578899.1 (hypothetical protein SDJN03_23347, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.4e-07
Identity = 48/105 (45.71%), Postives = 61/105 (58.10%), Query Frame = 0

Query: 1   MGFSAANLVCAVLVASIALNLPPETTANSVNLSS--PPPVHSSEPRLEKSLDAVKVSSKY 60
           MG+S ANL   +LVASIAL  P  TTA++V   S  PPP++ S          +K+S + 
Sbjct: 1   MGYSTANLFIVILVASIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLEG 60

Query: 61  KLRLAFAGKNGDDESELPPLSRAFLK-PRYPWPKRYVPKSSPPPF 103
           K       +NG+DESE PP S    + PR PWPK+ V KS PPPF
Sbjct: 61  KAGPVV--ENGEDESEPPPPSSKVRRGPRRPWPKKPVAKSPPPPF 103

BLAST of Spg008846 vs. NCBI nr
Match: KAG6578898.1 (hypothetical protein SDJN03_23346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.5 bits (132), Expect = 3.2e-04
Identity = 45/105 (42.86%), Postives = 59/105 (56.19%), Query Frame = 0

Query: 1   MGFSAANLVCAVLVASIALNLPPETTANSVNLSS---PPPVHSSEPRLEKSLDAVKVSSK 60
           MG+S ANL+  +LVASIAL LP E  A+++   S   PP  HS   +L      +KVS  
Sbjct: 1   MGYSTANLMFGILVASIALRLPLEARASAMVGPSPLPPPTCHSPSGQL-LFRRPIKVSLT 60

Query: 61  YKLRLAFAGKNGDDESELPPLSRAFLKPRYPWPKRYVPKSSPPPF 103
            K        +G+DE+E P  S+     R PWPK+ VPK+ PPPF
Sbjct: 61  VK-------ASGEDEAEAPS-SKDEKGRRKPWPKQPVPKAPPPPF 96

BLAST of Spg008846 vs. NCBI nr
Match: KAA0054914.1 (hypothetical protein E6C27_scaffold43052G00420 [Cucumis melo var. makuwa] >TYK22702.1 hypothetical protein E5676_scaffold1163G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 7.2e-04
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 0

Query: 1   MGFSAAN-LVCAVLVASIALNLPPETTANSVNLSSPPPVHSSEPRLEKSLDAVKVSSKYK 60
           MG S AN L+  + VASIAL LP ETTA ++  + P P+      +  +L  V+++ +  
Sbjct: 1   MGCSTANILILTIFVASIALRLPSETTARAI--ADPYPLSWPWLPIYNTLMKVRLNDE-- 60

Query: 61  LRLAFAGKNGDDESELPPLSRAFLKPRYPWPKRYVPKSSPPPF 103
                  +NGDDES+  P S+     R PWPK  V KS PPPF
Sbjct: 61  --AGSGEENGDDESD--PPSKEAKSSRKPWPKNPVSKSPPPPF 95

BLAST of Spg008846 vs. ExPASy TrEMBL
Match: A0A0A0KBD3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058730 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 4.2e-10
Identity = 47/94 (50.00%), Postives = 54/94 (57.45%), Query Frame = 0

Query: 16  SIALNLPPETTANSVNLS---SPP----PVHSSEPRLEKSLDAVKVSSKYKLRLAFAGKN 75
           S  L++ P  T +SVNLS   SPP    P   S   L    D VKV S  KL +   GKN
Sbjct: 2   STVLSMRPAITVSSVNLSPRLSPPLPPLPARISGEALVNRFDCVKVRS--KLHVGSLGKN 61

Query: 76  GDDESELPPLSRAFLKPRYPWPKRYVPKSSPPPF 103
           GD E +LP LS+  L PR PWP+RY PKS PPPF
Sbjct: 62  GDGEFKLPLLSKLLLMPRLPWPRRYAPKSPPPPF 93

BLAST of Spg008846 vs. ExPASy TrEMBL
Match: A0A5A7UIB8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00190 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-04
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 0

Query: 1   MGFSAAN-LVCAVLVASIALNLPPETTANSVNLSSPPPVHSSEPRLEKSLDAVKVSSKYK 60
           MG S AN L+  + VASIAL LP ETTA ++  + P P+      +  +L  V+++ +  
Sbjct: 1   MGCSTANILILTIFVASIALRLPSETTARAI--ADPYPLSWPWLPIYNTLMKVRLNDE-- 60

Query: 61  LRLAFAGKNGDDESELPPLSRAFLKPRYPWPKRYVPKSSPPPF 103
                  +NGDDES+  P S+     R PWPK  V KS PPPF
Sbjct: 61  --AGSGEENGDDESD--PPSKEAKSSRKPWPKNPVSKSPPPPF 95

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG6578899.11.4e-0745.71hypothetical protein SDJN03_23347, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6578898.13.2e-0442.86hypothetical protein SDJN03_23346, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0054914.17.2e-0440.78hypothetical protein E6C27_scaffold43052G00420 [Cucumis melo var. makuwa] >TYK22... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KBD34.2e-1050.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058730 PE=4 SV=1[more]
A0A5A7UIB83.5e-0440.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 25..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008846.1Spg008846.1mRNA