Spg008786 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg008786
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold10: 31379663 .. 31383939 (-)
RNA-Seq ExpressionSpg008786
SyntenySpg008786
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACACGTAATGGTCAACAGTCGGAGGCACGTGATGCACTTGCAGATGCTAACCGACCAGTAATTGGTTCATCCACTGATCAGGCTGCGTCAGGTGATTTAGAAGATTTACGTCATATTGACTCATATTTGTATATGTAATCTTATTAACTAATTACTTGCATTATCTTTGTTTCAGGATCTAGAGGTCGTTCAAGAAATCAACGAGGAAGAGGAAGGCGGACTAGAGGACATAGTCGGAATATTGAACTAGACCGATATGTGGCTCTTCATGGGAGGATCAGGATTGAGATCACCGAGCAGATTGGAAAACCAGTATGCGGTTGGGCTACACGCTTTTTTGCGTCGCTGAATCCCAAAATTCTTGTAGTGGAGCCTAAGCCCATTAGGGACTATTTTCAGCCGGTCTTTCAGGAGCAACAATCGAGGATTGTCTATGCCCCGATCAATGCTAATAATTTCGAGTTGAAAACAGGTCTCATTCAGATGGCTTGAGACTGTGCTTATAGAGGATCACCCACAGAGGATCCAAATTCTCACCTGAAATCCTTCCTAGACATCTGTGGGACGGTAAAGTTAAATGGAGTCTCTGATGATGCTATTCGCTTACGTTTATTTCCTTTTTCCTTGCAGGACAAGGCTCATGACTGGTTTCAATCCATTCCACCTGGGAGAATTACCACTTGGGATGCTTTGGTCCAGGCATTTTTGAAGAAATTCTTCCCTCCTGCCAAGACAATCAAGCTGAGGACCGAAATTGGGACATTCCAGCAACAATTTGATGAGCAACTCTTCGAGGCGTGGGAGCGATTTAAAGAGCTACTGAGGAAGTGCCCTCAGCATGGCTATCCCGACTGGCTTCAGGTTCAATTATTTTATAATGGCTTAACTCCTAGTACAAAAACTATTGTTGTTGCAGCTGCAGGAGGGACTCTGTTGTCCAAAACCGTTGAGAATGCTAGGACTTTGCTGGAGGAAATGGCCACCAATAGCTATCAGTGGCCATCTGAGCGGTCGAAACCGGAAAGATTGCTGCTGGAGTGTTCGAGATTGACAACGTAAGTGCACTTCAGGCCTAGATGTTTTCCCTTGCTAATGCTTTTCTAAAATTTTCAAGTACAGGGAGTGCTCAATCGATCGAGTCGGCAGCTGCCCTTGCATCCCAGACTCAGGAGGAGAATCTAGAGCAGGTTCAGTATGTTTCAAATTATAATTGTAGGGGATACAATAATAATTCTACACCTACACATTATCACCCTAGTAATAGAAATCACGAGAATTTTTCATATGCTAATAATAAGAATGTGTTGAATCCTCCTGGTTTTACCCCTCAAAGTCAAGAAAGTAAAAAGTCTTTAGAAGATCTTGTTGGAGCTTTTATTGCAGAATCAAGTAACAGGACCAACAAGCTCGAGGAGGTCGTGATTGCCATAAACACCACTGTCAATGGTCATTCTGCAGCCATCAAGAACATCGAGACTCAACTGGGACAACTGGTAAATGTTGTCAACACCATGAATAAAGGTAAAGCCCCACCTGAACATGAGAAATCTCAATTGGAGTACTGCAAGGCTGTCACTGTACATCACAATGCAGAATTGCACATAGCTGATGAGGAGGAGACTACTGAACCAGAGGAACTTACTGAAGAAGTTGAAAAGGGCACCACCTCAAACGAAGCTGAAAAGCTTAATCTTGAGCCCTCTATCCCTTCTCCTACTGTTTTAGTTCCCAAATCACAGAAAAAGAAAAAGAAGAATTCTAAGGCACAGTTTGATAAGTTTCTTGATGCTTTTACAGGTTTGACTGTTAATATTCCTTTTGCAGATGCACTAGAGCAAATTCCTCACTACAGGAAGTTCATGAAGGAATGGCTCATTAAATAGAAGAAGTAAAAGCAGATGGAGACTGTATTCCTTGCATCGACATGCAGTGCTCGCGTTCAGCAGAAAGTGCCAGAGAAATTGTCTGATCCAGGGAGTTTTACTATTCCTTGTAATTTTGGTACTTATTCTAGTAGAGCACTATGTGATCTAGGGGCTAGCATAAACATAATTCCTCTATCATTGTGCAAAAAGCATAACATAGGAGAAATAAAAATCTACTTCTGTTAGACTCTAGTTGGCTGACCAGTCTGTGGATAGTCCATATGGGATTGTTGAGAATGTGCTGATCAAAGTAGGTAGATTTTTCCTTCCTGTTGATTACTTTGTTTTAGATATTAAAGAGAATCCTGCCATGTCTATTATATTAGGGAGACCATTCCTTGCTACAGGGAGGGTCATAATTGATATTGAGCTCAGGGAGCTGATCATTAGAGTTTAACAGAAAAAGGAGATCCTAAAGGCTTTTTAGGACCCTCAGAACACATCAGAGACCATGTTGGTGGGTTATAGGAGAGGTGTTAGGAAGAGCACTAGTGATGGAACACCTGACAGTCGACCACCTTGACGCTTATTCAGTCAACACGTCGAGCTAATGACGTTAAACAAACGCTTATAGGAGGCAACCCAAGTAAGTTCAGTTGAGTTTTTCTTTTCGTTTATGATTTATTGCTTGTTTTTGTTTTGTAGGTCTTGTGATCCCAGTTTCTTCTTTGCTTGCAAGCTTCCATGAGAAGGTCATCGTCATTCCAGGGCAGTATTGTTCACTCCTTTCATTCTTTTATTGTTCTCATGTTTGATTTGCCATATTTTCCTTATACATTGAGGACAATGCATGTTTTAAGTTTGGGGGTGGAATTTCATGATTGTGGAGCCCTTGAGCATCTGAGTTCGGGCTATAGTTTTGAGCTTTCTTTGAATTGAGCATATGGTTGTTTTCTGGATGCTATTTTTGCATGACTATGATTTCCTATGATAGGCTTTCTTGTCAATTTTCAAGCTTTCGATGAGTTGTAAGCATGAGTGCCCAAAAAGGGAGACTTTTTAAACTTTTTCTAGGAGATTTCTTGCATGAGTAGAGTATTTGTCTCGGCTAGATTTAGATTTGAATGCTTAGGAGCGAATTATTAGGTTCATATGCTTGTTGTCACCTCGATAGGTGTAGGGAAGAGCTAAAGAGTAAATTTTTTGCAAATTAGCATGTTTTATCTTGCCTAGGAGGAAAGAAAAGAATATATTGTTTATCATGCTCATAAAGAAAAAAATCATTCTTGTTGTTACAAATTGAAAGAAAAAAGAAAGTCATGACTGATGCGCGCAATGCAATGTGTAATAAAGATTTAGACAAAAAGAGTTATCCCTGTTGTGAACAATTAGGCCAACCAAAGAGTAAAACTCAGGTTAAGGGTCGCTGCAATAGGTGTGTGAAAGCTAGTGCCACATATAAATGCTTGTTGTAATTTTCAATTATAAGCACCTAAGTATGGATGAAAACAAACTAAATTGTTCCATTGACTTGTTAGTGAATCCTTAGTGCCAGTGTAGAGGGAAGATGAGTTGAGAGTTTAATAATCCAATCCCAGGCTAGTAGAATCTAATCTAGTTAAGTTAGATCTCGCTCTTGCAAGTTAATTTTGGAAAACTTTTGATTTGTCTCCCTCATTGGTCCTTATGTGCATGTCTCTTGATTGCTTGATTATTGGCTTTTGAGCCTAGAGGATTGAGTCATGTTTGTTGCATCCATTCTTCAACTATATGCTTGATTTTAGTTTGCTCGAGGACTAGCAAAAGCTTAAGTTTGGGGGTGTTTGATAGCGAGCATAGCTAGCTATTTTTCCCTAATTAATTTAGCTAGTCTTTTATATTTAAATGGCCAAAACTATGCATTTTCATGTTTTATTTGTACGAAATGTGTTTTGGAGCTTAATTGAGAAATTGGAGCTAAATGGATGTTTAGGATGCGAAAAGAGGCAAAAGGAACGAAGCGAATTGAAGTTGGAAGCACACCAAATAGGGCTTGCCGAGGACCAGCGTCGAGACCCTTGCCATAGGGCGTCTCGACGCTCTAATTTTCCTTTTCTAATTTGGGCGGTAACAAACACAGCGTCTCGACGCTGTGTCAATAGCGTCTCGACGCTCTCGAGGATTTTCAAGACAGAATCTGCGTATCGCGACAGCGTCGCGCGCTGCCCCTATAGCGTCGCGACGCTAGGCCAATTTTTTCCCTATTTATAGTTTGCGATTAGGTCAGATTTGGGGACTTCTTTTGATGACTTTTTGGCCAAAAACTCTACTGGAGAGCTGCTGTGGAGGCTGAAGCAAGTGGAGAAAAGCGGGATTCAAGGCTTTGTTCGTGGAGATCGTGACGGGGACGTGCGGTCTCATCCTACTTAG

mRNA sequence

ATGACACGTAATGGTCAACAGTCGGAGGCACGTGATGCACTTGCAGATGCTAACCGACCAGTAATTGGTTCATCCACTGATCAGGCTGCGTCAGGATCTAGAGGTCGTTCAAGAAATCAACGAGGAAGAGGAAGGCGGACTAGAGGACATAGTCGGAATATTGAACTAGACCGATATGTGGCTCTTCATGGGAGGATCAGGATTGAGATCACCGAGCAGATTGGAAAACCATTTGCGATTAGGTCAGATTTGGGGACTTCTTTTGATGACTTTTTGGCCAAAAACTCTACTGGAGAGCTGCTGTGGAGGCTGAAGCAAGTGGAGAAAAGCGGGATTCAAGGCTTTGTTCGTGGAGATCGTGACGGGGACGTGCGGTCTCATCCTACTTAG

Coding sequence (CDS)

ATGACACGTAATGGTCAACAGTCGGAGGCACGTGATGCACTTGCAGATGCTAACCGACCAGTAATTGGTTCATCCACTGATCAGGCTGCGTCAGGATCTAGAGGTCGTTCAAGAAATCAACGAGGAAGAGGAAGGCGGACTAGAGGACATAGTCGGAATATTGAACTAGACCGATATGTGGCTCTTCATGGGAGGATCAGGATTGAGATCACCGAGCAGATTGGAAAACCATTTGCGATTAGGTCAGATTTGGGGACTTCTTTTGATGACTTTTTGGCCAAAAACTCTACTGGAGAGCTGCTGTGGAGGCTGAAGCAAGTGGAGAAAAGCGGGATTCAAGGCTTTGTTCGTGGAGATCGTGACGGGGACGTGCGGTCTCATCCTACTTAG

Protein sequence

MTRNGQQSEARDALADANRPVIGSSTDQAASGSRGRSRNQRGRGRRTRGHSRNIELDRYVALHGRIRIEITEQIGKPFAIRSDLGTSFDDFLAKNSTGELLWRLKQVEKSGIQGFVRGDRDGDVRSHPT
Homology
[Close]
BLAST of Spg008786 vs. NCBI nr
Match: XP_038887413.1 (uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-10
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 1   MTRNGQQSEARDALADANRPVIGSSTDQ---AASGSRGRSRN-QRGRGRRTRGHSRNIEL 60
           +  +GQ+ E    L   + P IGSST++    ASGSR  SR   RG  RRTRGHSRN+EL
Sbjct: 332 LAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNLEL 391

Query: 61  DRYVALHGRIRIEITEQIGKPFAIRSDLGTSFDDFLAKNS 97
           DR+V +HGRIRIEI E++GKP    +   ++    +A+N+
Sbjct: 392 DRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNT 431

[Close]
BLAST of Spg008786 vs. NCBI nr
Match: XP_038887408.1 (poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-10
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 1   MTRNGQQSEARDALADANRPVIGSSTDQ---AASGSRGRSRN-QRGRGRRTRGHSRNIEL 60
           +  +GQ+ E    L   + P IGSST++    ASGSR  SR   RG  RRTRGHSRN+EL
Sbjct: 520 LAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNLEL 579

Query: 61  DRYVALHGRIRIEITEQIGKPFAIRSDLGTSFDDFLAKNS 97
           DR+V +HGRIRIEI E++GKP    +   ++    +A+N+
Sbjct: 580 DRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNT 619

[Close]
BLAST of Spg008786 vs. NCBI nr
Match: XP_038887411.1 (poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412.1 poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-10
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 1   MTRNGQQSEARDALADANRPVIGSSTDQ---AASGSRGRSRN-QRGRGRRTRGHSRNIEL 60
           +  +GQ+ E    L   + P IGSST++    ASGSR  SR   RG  RRTRGHSRN+EL
Sbjct: 520 LAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNLEL 579

Query: 61  DRYVALHGRIRIEITEQIGKPFAIRSDLGTSFDDFLAKNS 97
           DR+V +HGRIRIEI E++GKP    +   ++    +A+N+
Sbjct: 580 DRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNT 619

[Close]
BLAST of Spg008786 vs. NCBI nr
Match: XP_038887414.1 (poly [ADP-ribose] polymerase 1-like isoform X6 [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-10
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 1   MTRNGQQSEARDALADANRPVIGSSTDQ---AASGSRGRSRN-QRGRGRRTRGHSRNIEL 60
           +  +GQ+ E    L   + P IGSST++    ASGSR  SR   RG  RRTRGHSRN+EL
Sbjct: 520 LAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNLEL 579

Query: 61  DRYVALHGRIRIEITEQIGKPFAIRSDLGTSFDDFLAKNS 97
           DR+V +HGRIRIEI E++GKP    +   ++    +A+N+
Sbjct: 580 DRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNT 619

[Close]
BLAST of Spg008786 vs. NCBI nr
Match: XP_038887409.1 (poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida])

HSP 1 Score: 74.7 bits (182), Expect = 6.5e-10
Identity = 47/100 (47.00%), Postives = 64/100 (64.00%), Query Frame = 0 

Query: 1   MTRNGQQSEARDALADANRPVIGSSTDQ---AASGSRGRSRN-QRGRGRRTRGHSRNIEL 60
           +  +GQ+ E    L   + P IGSST++    ASGSR  SR   RG  RRTRGHSRN+EL
Sbjct: 520 LAHSGQEQETCLLLQADDTPFIGSSTERDATMASGSRSCSRQVSRGEKRRTRGHSRNLEL 579

Query: 61  DRYVALHGRIRIEITEQIGKPFAIRSDLGTSFDDFLAKNS 97
           DR+V +HGRIRIEI E++GKP    +   ++    +A+N+
Sbjct: 580 DRHVNIHGRIRIEIDEEVGKPVCANATKFSNAIGTIARNT 619

The following BLAST results are available for this feature:
BLAST of Spg008786 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038887413.16.5e-1047.00uncharacterized protein LOC120077557 isoform X5 [Benincasa hispida][more]
XP_038887408.16.5e-1047.00poly [ADP-ribose] polymerase 1-like isoform X1 [Benincasa hispida][more]
XP_038887411.16.5e-1047.00poly [ADP-ribose] polymerase 1-like isoform X4 [Benincasa hispida] >XP_038887412... [more]
XP_038887414.16.5e-1047.00poly [ADP-ribose] polymerase 1-like isoform X6 [Benincasa hispida][more]
XP_038887409.16.5e-1047.00poly [ADP-ribose] polymerase 1-like isoform X2 [Benincasa hispida][more]
BLAST of Spg008786 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg008786 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg008786 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 21..37
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg008786.1Spg008786.1mRNA