Spg008729 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008729
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold10: 36282872 .. 36283192 (+)
RNA-Seq Expression	Spg008729
Synteny	Spg008729

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGTCTTCAATGCGGCCCTCTCTCGTTTTCGCCATTTTTGCAGCATTATTCCTCTCTTTGAGCTTCCCCTCCGCCGCCCACTCTTCTCCGATCAAACAGCTTCATTCCTCACTGCCTTCTCTTTCTCACAGGAAAATTCTTCCGCCACCGCTACCGCCACCGCCCGCACCGGTTTCCCGAAACCCATACCCGTCTCCTCTACCTCTGCCATGTGAAAGTGAAACAGCCTCACCGCCCTTAACTTCGCCGTCGCCGCCGCCGCCTATGTTTCAATGGCCACCCGATTTCGTCAAAAAAACCCCGTCGCCCCCTTTCTAG

mRNA sequence

ATGAAGTCTTCAATGCGGCCCTCTCTCGTTTTCGCCATTTTTGCAGCATTATTCCTCTCTTTGAGCTTCCCCTCCGCCGCCCACTCTTCTCCGATCAAACAGCTTCATTCCTCACTGCCTTCTCTTTCTCACAGGAAAATTCTTCCGCCACCGCTACCGCCACCGCCCGCACCGGTTTCCCGAAACCCATACCCGTCTCCTCTACCTCTGCCATGTGAAAGTGAAACAGCCTCACCGCCCTTAACTTCGCCGTCGCCGCCGCCGCCTATGTTTCAATGGCCACCCGATTTCGTCAAAAAAACCCCGTCGCCCCCTTTCTAG

Coding sequence (CDS)

ATGAAGTCTTCAATGCGGCCCTCTCTCGTTTTCGCCATTTTTGCAGCATTATTCCTCTCTTTGAGCTTCCCCTCCGCCGCCCACTCTTCTCCGATCAAACAGCTTCATTCCTCACTGCCTTCTCTTTCTCACAGGAAAATTCTTCCGCCACCGCTACCGCCACCGCCCGCACCGGTTTCCCGAAACCCATACCCGTCTCCTCTACCTCTGCCATGTGAAAGTGAAACAGCCTCACCGCCCTTAACTTCGCCGTCGCCGCCGCCGCCTATGTTTCAATGGCCACCCGATTTCGTCAAAAAAACCCCGTCGCCCCCTTTCTAG

Protein sequence

MKSSMRPSLVFAIFAALFLSLSFPSAAHSSPIKQLHSSLPSLSHRKILPPPLPPPPAPVSRNPYPSPLPLPCESETASPPLTSPSPPPPMFQWPPDFVKKTPSPPF

Homology

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BLAST of Spg008729 vs. NCBI nr
Match: KAG6578900.1 (hypothetical protein SDJN03_23348, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 55.5 bits (132), Expect = 3.3e-04
Identity = 40/93 (43.01%), Postives = 45/93 (48.39%), Query Frame = 0


Query: 14  FAALFLSLSFPSAAHSSPIKQLHSSLPSLSHRKILPPPLPPPPAPVSRNPYPSPLPLPCE 73
           +A L LSL FPSA           +  S  HRK LPPP PPPP                 
Sbjct: 70  YAVLILSLGFPSAV---------DARSSRHHRKTLPPPPPPPP----------------- 128

Query: 74  SETASPPLTSPSPPPPMFQWPPDFVKKTPSPPF 107
                    +PSPPPP FQWPPDFV+K+P PPF
Sbjct: 130 --------PNPSPPPPKFQWPPDFVRKSPPPPF 128

The following BLAST results are available for this feature:

BLAST of Spg008729 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578900.1	3.3e-04	43.01	hypothetical protein SDJN03_23348, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Spg008729 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008729 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008729 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..106

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008729.1	Spg008729.1	mRNA