Spg008669 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008669
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Geranylgeranyl pyrophosphate synthase, chloroplastic
Location	scaffold10: 33786644 .. 33787626 (+)
RNA-Seq Expression	Spg008669
Synteny	Spg008669

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTTGCCAAAGCTTTGTTTGGATTTCATCCTTTGAGGTCACTCAACAATGGCTTCAAAAGCAACCAAAGAAGAACAACATTTGCCAAAGCTGAAGCCTTTAATGTATTCACCGACATAGAGAAGTACTCATTGAAGAATAACAATGATCCTTCTTCTTTGCCAAAATTTGAATTCAAAGACTACTTGAGCTCCAAGATAAAGCGAGTCAATGAGGCTTTGAATCAAACAGTGCCATTGCAGCACCCTACGCAGATCCATGAGGCCATGAGATACTCTCTTTTGTTGCCTGGAAAGCGCTTTTGTCCCGTTCTTTGCCTTGCATCGTGCGAACTCGTCGGTGGAGATGAAGCTCAAGCCATGCCTGTTGCTTGCGCCGTTGAGATGATCAAGACCATGGCGTTGATGCTTGATGATCTTCCTTGCATGGACGACGATGATGTTCGTCGCGGGAAGCCTGCGTGCCATAAGGTTTGTTATTGTTATTGGAACTCAAAAGTTTAGGTCGGAAGGTGAAGATCAATTTAAAATATGTTTTTGGATGATTTTTGAAAAACAATCTTTCTCTTCTAAAAAAAAAGTTTCTTGTTTAGAAGTAAAATTAATATTTCAATAAGCACTCGCTGAAAAAGTACTTTAAAAGTTTTATTTCAGTGTTTTTAGATTTTTTATTTTTTATTATTTATTTATTTTTTTTATTTTTTTTTTATAGTTTCTAACCAATATCCTTTTGAAATTTTTGGAAGTGTAATATAGGTTAGGGTTGTTCGTCGGACGGTCAGAGTCGGTTTTGGACAAAAACTGTTGCAAAAAATTTACCTATTGGTTTTAGTCGGTCGGTAGTGATGGAAAGTTTTGACGTGTTTTATTTTTTGAAACTGACTGACCAACAACTACACGGTTGGTCGGTCGGTTTTGTTGGATTTTAGGCTTCTAATGAAGGAGATGTGATTTTGTTCTCGAACTTGGAAGCACAGTAA

mRNA sequence

ATGGCAGTTGCCAAAGCTTTGTTTGGATTTCATCCTTTGAGGTCACTCAACAATGGCTTCAAAAGCAACCAAAGAAGAACAACATTTGCCAAAGCTGAAGCCTTTAATGTATTCACCGACATAGAGAAGTACTCATTGAAGAATAACAATGATCCTTCTTCTTTGCCAAAATTTGAATTCAAAGACTACTTGAGCTCCAAGATAAAGCGAGTCAATGAGGCTTTGAATCAAACAGTGCCATTGCAGCACCCTACGCAGATCCATGAGGCCATGAGATACTCTCTTTTGTTGCCTGGAAAGCGCTTTTGTCCCGTTCTTTGCCTTGCATCGTGCGAACTCGTCGGTGGAGATGAAGCTCAAGCCATGCCTGTTGCTTGCGCCGTTGAGATGATCAAGACCATGGCGTTGATGCTTGATGATCTTCCTTGCATGGACGACGATGATGTTCGTCGCGGGAAGCCTGCGTGCCATAAGGCTTCTAATGAAGGAGATGTGATTTTGTTCTCGAACTTGGAAGCACAGTAA

Coding sequence (CDS)

ATGGCAGTTGCCAAAGCTTTGTTTGGATTTCATCCTTTGAGGTCACTCAACAATGGCTTCAAAAGCAACCAAAGAAGAACAACATTTGCCAAAGCTGAAGCCTTTAATGTATTCACCGACATAGAGAAGTACTCATTGAAGAATAACAATGATCCTTCTTCTTTGCCAAAATTTGAATTCAAAGACTACTTGAGCTCCAAGATAAAGCGAGTCAATGAGGCTTTGAATCAAACAGTGCCATTGCAGCACCCTACGCAGATCCATGAGGCCATGAGATACTCTCTTTTGTTGCCTGGAAAGCGCTTTTGTCCCGTTCTTTGCCTTGCATCGTGCGAACTCGTCGGTGGAGATGAAGCTCAAGCCATGCCTGTTGCTTGCGCCGTTGAGATGATCAAGACCATGGCGTTGATGCTTGATGATCTTCCTTGCATGGACGACGATGATGTTCGTCGCGGGAAGCCTGCGTGCCATAAGGCTTCTAATGAAGGAGATGTGATTTTGTTCTCGAACTTGGAAGCACAGTAA

Protein sequence

MAVAKALFGFHPLRSLNNGFKSNQRRTTFAKAEAFNVFTDIEKYSLKNNNDPSSLPKFEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLASCELVGGDEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVILFSNLEAQ

Homology

[Close]

BLAST of Spg008669 vs. NCBI nr
Match: KAG6743200.1 (hypothetical protein POTOM_054148 [Populus tomentosa])

HSP 1 Score: 162.9 bits (411), Expect = 2.4e-36
Identity = 77/125 (61.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 45  SLKNNNDPSSLPK--FEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRF 104
           +LK  N P   P   F+FK+Y+ +K+++VNEAL + VPLQHP +IHEAMRYSLL  GKR 
Sbjct: 45  NLKQTNQPQEAPSLAFQFKEYMFTKLRQVNEALEEAVPLQHPIKIHEAMRYSLLGNGKRM 104

Query: 105 CPVLCLASCELVGGDEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNE 164
           CP+LC+ASCELVGGDE  AMP+ACA+EM+  M+L+ DDLPCMD+DD+RRGKP  HK   E
Sbjct: 105 CPILCIASCELVGGDEELAMPMACALEMVHAMSLIHDDLPCMDNDDLRRGKPTNHKVFGE 164

Query: 165 GDVIL 168
              IL
Sbjct: 165 CIAIL 169

[Close]

BLAST of Spg008669 vs. NCBI nr
Match: XP_006383334.2 (geranylgeranyl pyrophosphate synthase, chloroplastic [Populus trichocarpa])

HSP 1 Score: 161.8 bits (408), Expect = 5.4e-36
Identity = 77/125 (61.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 45  SLKNNNDPSSLPK--FEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRF 104
           +LK  N    +P   F+FK+Y+ +K+K+VNEAL + VPLQHP +IHEAMRYSLL  GKR 
Sbjct: 45  NLKQTNQAQEVPSLAFQFKEYMLTKLKQVNEALEEAVPLQHPIKIHEAMRYSLLGNGKRM 104

Query: 105 CPVLCLASCELVGGDEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNE 164
           CP+LC+ASCELVGGDE  AMP+ACA+EM+  M+L+ DDLPCMD+DD+RRGKP  HK   E
Sbjct: 105 CPILCIASCELVGGDEELAMPLACALEMVHAMSLIHDDLPCMDNDDLRRGKPTNHKVFGE 164

Query: 165 GDVIL 168
              IL
Sbjct: 165 CIAIL 169

[Close]

BLAST of Spg008669 vs. NCBI nr
Match: PNS96572.1 (hypothetical protein POPTR_017G124700 [Populus trichocarpa])

HSP 1 Score: 161.8 bits (408), Expect = 5.4e-36
Identity = 77/125 (61.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 45  SLKNNNDPSSLPK--FEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRF 104
           +LK  N    +P   F+FK+Y+ +K+K+VNEAL + VPLQHP +IHEAMRYSLL  GKR 
Sbjct: 7   NLKQTNQAQEVPSLAFQFKEYMLTKLKQVNEALEEAVPLQHPIKIHEAMRYSLLGNGKRM 66

Query: 105 CPVLCLASCELVGGDEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNE 164
           CP+LC+ASCELVGGDE  AMP+ACA+EM+  M+L+ DDLPCMD+DD+RRGKP  HK   E
Sbjct: 67  CPILCIASCELVGGDEELAMPLACALEMVHAMSLIHDDLPCMDNDDLRRGKPTNHKVFGE 126

Query: 165 GDVIL 168
              IL
Sbjct: 127 CIAIL 131

[Close]

BLAST of Spg008669 vs. NCBI nr
Match: XP_006482126.1 (geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [Citrus sinensis])

HSP 1 Score: 161.4 bits (407), Expect = 7.1e-36
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 55  LPKFEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLASCELV 114
           LP F+F++Y++SK KRVN+AL++TV L+HP +IHEAMRYSLL  GKR  PVLC+ASCELV
Sbjct: 69  LPIFQFEEYMTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELV 128

Query: 115 GGDEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           GGDE+ AMPVACA+EMI TM+L+ DDLPCMD+DD RRGKP  HK   E   IL
Sbjct: 129 GGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAIL 181

[Close]

BLAST of Spg008669 vs. NCBI nr
Match: GAY43756.1 (hypothetical protein CUMW_076950 [Citrus unshiu])

HSP 1 Score: 161.4 bits (407), Expect = 7.1e-36
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 55  LPKFEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLASCELV 114
           LP F+F++Y++SK KRVN+AL++TV L+HP +IHEAMRYSLL  GKR  PVLC+ASCELV
Sbjct: 69  LPIFQFEEYMTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELV 128

Query: 115 GGDEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           GGDE+ AMPVACA+EMI TM+L+ DDLPCMD+DD RRGKP  HK   E   IL
Sbjct: 129 GGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAIL 181

[Close]

BLAST of Spg008669 vs. ExPASy Swiss-Prot
Match: Q94ID7 (Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=3981 GN=GGPS PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.8e-35
Identity = 77/158 (48.73%), Postives = 101/158 (63.92%), Query Frame = 0


Query: 10  FHPLRSLNNGFKSNQRRTTFAKAEAFNVFTDIEKYSLKNNNDPSSLPKFEFKDYLSSKIK 69
           F+PL+SL   F   +     +   A  + T  E+   +  N+P   P F+FK Y+  K  
Sbjct: 33  FNPLKSLAISFAYRKSERPISSVSA--IITKEEETLQEEQNNPP--PSFDFKSYMLQKGN 92

Query: 70  RVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLASCELVGGDEAQAMPVACAVE 129
            +N+AL   +PLQ P +IHE+MRYSLL  GKR  P LCLA+CELVGG+++ AMP ACAVE
Sbjct: 93  SINQALEAAIPLQEPAKIHESMRYSLLAGGKRVRPALCLAACELVGGNDSMAMPAACAVE 152

Query: 130 MIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           MI TM+L+ DDLPCMD+DD+RRGKP  H    E   +L
Sbjct: 153 MIHTMSLIHDDLPCMDNDDLRRGKPTNHIVFGEDVAVL 186

[Close]

BLAST of Spg008669 vs. ExPASy Swiss-Prot
Match: O04046 (Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 OS=Arabidopsis thaliana OX=3702 GN=GGPPS2 PE=1 SV=2)

HSP 1 Score: 146.0 bits (367), Expect = 4.0e-34
Identity = 69/110 (62.73%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 58  FEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLASCELVGGD 117
           FEF  Y+ SK + VN+AL + +P+  P +IHEAMRY++L  GKR  P+LCLASCELVGG 
Sbjct: 83  FEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQ 142

Query: 118 EAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           E  AMP ACAVEMI TM+L+ DDLPCMD+DD+RRGKP  HK   EG  IL
Sbjct: 143 ENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAIL 192

[Close]

BLAST of Spg008669 vs. ExPASy Swiss-Prot
Match: P34802 (Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGPPS1 PE=1 SV=2)

HSP 1 Score: 144.8 bits (364), Expect = 9.0e-34
Identity = 71/118 (60.17%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 50  NDPSSLPKFEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLA 109
           ++PSS   F+F  Y+ +K + VN+AL+  VPL+ P +IHEAMRYSLL  GKR  PVLC+A
Sbjct: 69  SEPSS---FDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIA 128

Query: 110 SCELVGGDEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           +CELVGG+E+ AMP ACAVEMI TM+L+ DDLPCMD+DD+RRGKP  HK   E   +L
Sbjct: 129 ACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVL 183

[Close]

BLAST of Spg008669 vs. ExPASy Swiss-Prot
Match: Q43133 (Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis alba OX=3728 GN=GGPS1 PE=1 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 9.0e-34
Identity = 71/121 (58.68%), Postives = 88/121 (72.73%), Query Frame = 0


Query: 47  KNNNDPSSLPKFEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVL 106
           ++NN  SS   F+F  Y+  K   VN+AL+  VPL+ P +IHEAMRYSLL  GKR  PVL
Sbjct: 59  EDNNLKSSSSSFDFMSYIIRKADSVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVL 118

Query: 107 CLASCELVGGDEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVI 166
           C+A+CELVGG+E+ AMP  CAVEMI TM+L+ DDLPCMD+DD+RRGKP  HK   E   +
Sbjct: 119 CIAACELVGGEESLAMPARCAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEDVAV 178

Query: 167 L 168
           L
Sbjct: 179 L 179

[Close]

BLAST of Spg008669 vs. ExPASy Swiss-Prot
Match: A0A0U3BRC5 (Geranylfarnesyl diphosphate synthase, chloroplastic OS=Leucosceptrum canum OX=694369 GN=GFDPS PE=1 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.5e-33
Identity = 66/111 (59.46%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 57  KFEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLASCELVGG 116
           +F+FK Y+  KI  VN+AL+  +P++ P +IHEAMRYSLLL GKR CP++CLA+C LVGG
Sbjct: 68  QFDFKAYMLEKITAVNQALDAALPVREPVKIHEAMRYSLLLGGKRICPIVCLAACHLVGG 127

Query: 117 DEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           DE+ AMP A A+EMI  M+LM DDLPCMD+DD+RRG+P+ H    EG  +L
Sbjct: 128 DESTAMPSAAALEMIHAMSLMHDDLPCMDNDDLRRGRPSNHVVFGEGATVL 178

[Close]

BLAST of Spg008669 vs. ExPASy TrEMBL
Match: A0A2K1X723 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G124700 PE=3 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 2.6e-36
Identity = 77/125 (61.60%), Postives = 96/125 (76.80%), Query Frame = 0


Query: 45  SLKNNNDPSSLPK--FEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRF 104
           +LK  N    +P   F+FK+Y+ +K+K+VNEAL + VPLQHP +IHEAMRYSLL  GKR 
Sbjct: 7   NLKQTNQAQEVPSLAFQFKEYMLTKLKQVNEALEEAVPLQHPIKIHEAMRYSLLGNGKRM 66

Query: 105 CPVLCLASCELVGGDEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNE 164
           CP+LC+ASCELVGGDE  AMP+ACA+EM+  M+L+ DDLPCMD+DD+RRGKP  HK   E
Sbjct: 67  CPILCIASCELVGGDEELAMPLACALEMVHAMSLIHDDLPCMDNDDLRRGKPTNHKVFGE 126

Query: 165 GDVIL 168
              IL
Sbjct: 127 CIAIL 131

[Close]

BLAST of Spg008669 vs. ExPASy TrEMBL
Match: V4ST05 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013734mg PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.4e-36
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 55  LPKFEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLASCELV 114
           LP F+F++Y++SK KRVN+AL++TV L+HP +IHEAMRYSLL  GKR  PVLC+ASCELV
Sbjct: 69  LPIFQFEEYMTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELV 128

Query: 115 GGDEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           GGDE+ AMPVACA+EMI TM+L+ DDLPCMD+DD RRGKP  HK   E   IL
Sbjct: 129 GGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAIL 181

[Close]

BLAST of Spg008669 vs. ExPASy TrEMBL
Match: A0A2H5NUF2 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_076950 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 3.4e-36
Identity = 77/113 (68.14%), Postives = 93/113 (82.30%), Query Frame = 0


Query: 55  LPKFEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLASCELV 114
           LP F+F++Y++SK KRVN+AL++TV L+HP +IHEAMRYSLL  GKR  PVLC+ASCELV
Sbjct: 69  LPIFQFEEYMTSKAKRVNKALDETVQLRHPAKIHEAMRYSLLAGGKRVRPVLCIASCELV 128

Query: 115 GGDEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           GGDE+ AMPVACA+EMI TM+L+ DDLPCMD+DD RRGKP  HK   E   IL
Sbjct: 129 GGDESSAMPVACALEMIHTMSLVHDDLPCMDNDDFRRGKPTNHKVFGEDTAIL 181

[Close]

BLAST of Spg008669 vs. ExPASy TrEMBL
Match: A0A5P9Q552 (Geranylgeranyl diphosphate synthase 8 OS=Tripterygium wilfordii OX=458696 GN=GGPPS8 PE=2 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.9e-36
Identity = 85/158 (53.80%), Postives = 115/158 (72.78%), Query Frame = 0


Query: 13  LRSLNNGFKSNQRRTTFAKAEAFNV---FTDIEKYSLKNNNDPSSLPKFEFKDYLSSKIK 72
           L+ L+NG + +  R  F +A+   +    T +E+   ++ N   SL +F+F +Y+SSK +
Sbjct: 16  LKRLSNG-RKDLFRAPFHQAKLVPMRIHATHVEELIPRSQN--PSLGRFQFDEYMSSKAE 75

Query: 73  RVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLASCELVGGDEAQAMPVACAVE 132
           +VN+AL++ VPL+HP +IHEAMRYSLL  GKR  PVLC+ASCELVGGDE+ AMP+ACA+E
Sbjct: 76  KVNKALDEAVPLKHPQKIHEAMRYSLLAGGKRVRPVLCIASCELVGGDESSAMPMACAME 135

Query: 133 MIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           MI TM+L+ DDLPCMD+DD+RRGKP  HK   E   IL
Sbjct: 136 MIHTMSLIHDDLPCMDNDDLRRGKPTNHKVYGEETAIL 170

[Close]

BLAST of Spg008669 vs. ExPASy TrEMBL
Match: A0A2K2AS04 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G090600 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 1.3e-35
Identity = 85/162 (52.47%), Postives = 107/162 (66.05%), Query Frame = 0


Query: 18  NGFKSNQRRTTFA-------KAEAFNVFTDIEKYSLK-----NNNDPSSLPKFEFKDYLS 77
           NG  +NQ RT          K +A  V +   K S +     N +   S P FEFK+Y+ 
Sbjct: 21  NGLINNQPRTPLGHLKFAPLKIQATYVASPSFKQSFQSQEVGNKSQKVSFPAFEFKEYMI 80

Query: 78  SKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLASCELVGGDEAQAMPVA 137
           +K  +VN+AL++ VPLQHP +I+EAMRYSLL  GKR  P+LC+ASCELVGGDE  AMP A
Sbjct: 81  NKANQVNKALDEAVPLQHPQKINEAMRYSLLAGGKRVRPILCIASCELVGGDEGLAMPAA 140

Query: 138 CAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           CA+EMI TM+L+ DDLPCMD+DD+RRGKP  HK   E   +L
Sbjct: 141 CALEMIHTMSLIHDDLPCMDNDDLRRGKPTSHKIFGEDTAVL 182

[Close]

BLAST of Spg008669 vs. TAIR 10
Match: AT2G23800.1 (geranylgeranyl pyrophosphate synthase 2 )

HSP 1 Score: 146.0 bits (367), Expect = 2.9e-35
Identity = 69/110 (62.73%), Postives = 83/110 (75.45%), Query Frame = 0


Query: 58  FEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLASCELVGGD 117
           FEF  Y+ SK + VN+AL + +P+  P +IHEAMRY++L  GKR  P+LCLASCELVGG 
Sbjct: 83  FEFDPYMMSKAESVNKALEEAIPVGEPLKIHEAMRYAILAAGKRVRPILCLASCELVGGQ 142

Query: 118 EAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           E  AMP ACAVEMI TM+L+ DDLPCMD+DD+RRGKP  HK   EG  IL
Sbjct: 143 ENAAMPAACAVEMIHTMSLIKDDLPCMDNDDLRRGKPTTHKVYGEGVAIL 192

[Close]

BLAST of Spg008669 vs. TAIR 10
Match: AT4G36810.1 (geranylgeranyl pyrophosphate synthase 1 )

HSP 1 Score: 144.8 bits (364), Expect = 6.4e-35
Identity = 71/118 (60.17%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 50  NDPSSLPKFEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLA 109
           ++PSS   F+F  Y+ +K + VN+AL+  VPL+ P +IHEAMRYSLL  GKR  PVLC+A
Sbjct: 69  SEPSS---FDFMSYIITKAELVNKALDSAVPLREPLKIHEAMRYSLLAGGKRVRPVLCIA 128

Query: 110 SCELVGGDEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           +CELVGG+E+ AMP ACAVEMI TM+L+ DDLPCMD+DD+RRGKP  HK   E   +L
Sbjct: 129 ACELVGGEESTAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVL 183

[Close]

BLAST of Spg008669 vs. TAIR 10
Match: AT2G18620.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 138.3 bits (347), Expect = 6.0e-33
Identity = 66/110 (60.00%), Postives = 82/110 (74.55%), Query Frame = 0


Query: 58  FEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLASCELVGGD 117
           F+F  Y+  K   VNEAL+  V L+ P +IHEA+RYSLL  GKR  PVLC+A+CELVGG+
Sbjct: 53  FDFTSYMIGKANAVNEALDSAVSLREPIKIHEAIRYSLLARGKRVRPVLCIAACELVGGE 112

Query: 118 EAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           E+ A+P ACAVEMI TM+L+ DDLPCMD+DD+RRGKP  HK   E   +L
Sbjct: 113 ESVALPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVL 162

[Close]

BLAST of Spg008669 vs. TAIR 10
Match: AT2G18640.1 (geranylgeranyl pyrophosphate synthase 4 )

HSP 1 Score: 137.5 bits (345), Expect = 1.0e-32
Identity = 75/155 (48.39%), Postives = 97/155 (62.58%), Query Frame = 0


Query: 13  LRSLNNGFKSNQRRTTFAKAEAFNVFTDIEKYSLKNNNDPSSLPKFEFKDYLSSKIKRVN 72
           +R L+   KS      FA+ +    F D     L N  D      F+FK Y+ SK + +N
Sbjct: 37  IRLLHIPIKSPVAAAIFARKDT-REFLD-SSIKLVNEEDDFGF-SFDFKPYMISKAETIN 96

Query: 73  EALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCLASCELVGGDEAQAMPVACAVEMIK 132
            AL++ +PL  P  IH+AMRY++L  GKR  P+LCLA+CELVGG+E  A+  ACAVEMI 
Sbjct: 97  RALDEAIPLIEPLNIHKAMRYAILAGGKRVRPILCLAACELVGGEERLAIQAACAVEMIH 156

Query: 133 TMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           TM+L+ DDLPCMD+DD+RRGKP  HK   E   IL
Sbjct: 157 TMSLIKDDLPCMDNDDLRRGKPTTHKVFGESVAIL 188

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BLAST of Spg008669 vs. TAIR 10
Match: AT3G29430.1 (Terpenoid synthases superfamily protein )

HSP 1 Score: 135.2 bits (339), Expect = 5.1e-32
Identity = 70/119 (58.82%), Postives = 85/119 (71.43%), Query Frame = 0


Query: 49  NNDPSSLPKFEFKDYLSSKIKRVNEALNQTVPLQHPTQIHEAMRYSLLLPGKRFCPVLCL 108
           +ND +S   F+FK Y+  K + V+ ALN +VPLQ P  I EA+RYSLL  GKR  P+LC+
Sbjct: 54  SNDRNS--AFDFKSYMIRKAESVSAALNVSVPLQEPLTIQEAVRYSLLAGGKRVRPLLCI 113

Query: 109 ASCELVGGDEAQAMPVACAVEMIKTMALMLDDLPCMDDDDVRRGKPACHKASNEGDVIL 168
           A+CELVGGDEA AM  ACAVEMI T +L+ DDLPCMDD D+RRGKP  HK   E   +L
Sbjct: 114 AACELVGGDEATAMSAACAVEMIHTSSLIHDDLPCMDDADLRRGKPTNHKEFGEDMAVL 170

The following BLAST results are available for this feature:

BLAST of Spg008669 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6743200.1	2.4e-36	61.60	hypothetical protein POTOM_054148 [Populus tomentosa]	[more]
XP_006383334.2	5.4e-36	61.60	geranylgeranyl pyrophosphate synthase, chloroplastic [Populus trichocarpa]	[more]
PNS96572.1	5.4e-36	61.60	hypothetical protein POPTR_017G124700 [Populus trichocarpa]	[more]
XP_006482126.1	7.1e-36	68.14	geranylgeranyl pyrophosphate synthase 7, chloroplastic-like [Citrus sinensis]	[more]
GAY43756.1	7.1e-36	68.14	hypothetical protein CUMW_076950 [Citrus unshiu]	[more]

BLAST of Spg008669 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94ID7	4.8e-35	48.73	Geranylgeranyl pyrophosphate synthase, chloroplastic OS=Hevea brasiliensis OX=39...	[more]
O04046	4.0e-34	62.73	Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 2 OS=Arabidops...	[more]
P34802	9.0e-34	60.17	Heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplast...	[more]
Q43133	9.0e-34	58.68	Geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic OS=Sinapis al...	[more]
A0A0U3BRC5	1.5e-33	59.46	Geranylfarnesyl diphosphate synthase, chloroplastic OS=Leucosceptrum canum OX=69...	[more]

BLAST of Spg008669 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2K1X723	2.6e-36	61.60	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_017G124700 PE=3 ...	[more]
V4ST05	3.4e-36	68.14	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10013734mg PE=3 ...	[more]
A0A2H5NUF2	3.4e-36	68.14	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_076950 PE=3 SV=1	[more]
A0A5P9Q552	5.9e-36	53.80	Geranylgeranyl diphosphate synthase 8 OS=Tripterygium wilfordii OX=458696 GN=GGP...	[more]
A0A2K2AS04	1.3e-35	52.47	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_004G090600 PE=3 ...	[more]

BLAST of Spg008669 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G23800.1	2.9e-35	62.73	geranylgeranyl pyrophosphate synthase 2	[more]
AT4G36810.1	6.4e-35	60.17	geranylgeranyl pyrophosphate synthase 1	[more]
AT2G18620.1	6.0e-33	60.00	Terpenoid synthases superfamily protein	[more]
AT2G18640.1	1.0e-32	48.39	geranylgeranyl pyrophosphate synthase 4	[more]
AT3G29430.1	5.1e-32	58.82	Terpenoid synthases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008949	Isoprenoid synthase domain superfamily	GENE3D	1.10.600.10	Farnesyl Diphosphate Synthase	coord: 53..171 e-value: 3.7E-38 score: 133.2
IPR008949	Isoprenoid synthase domain superfamily	SUPERFAMILY	48576	Terpenoid synthases	coord: 60..169
IPR000092	Polyprenyl synthetase	PFAM	PF00348	polyprenyl_synt	coord: 86..167 e-value: 3.1E-15 score: 55.9
None	No IPR available	PANTHER	PTHR43281	FARNESYL DIPHOSPHATE SYNTHASE	coord: 16..163
IPR033749	Polyprenyl synthetase, conserved site	PROSITE	PS00723	POLYPRENYL_SYNTHASE_1	coord: 136..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008669.1	Spg008669.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008299	isoprenoid biosynthetic process
molecular_function	GO:0004659	prenyltransferase activity