Spg008392 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008392
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	rRNA-processing protein UTP23 homolog
Location	scaffold10: 32596202 .. 32597593 (-)
RNA-Seq Expression	Spg008392
Synteny	Spg008392

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGATTCAAAAAGCAAAAGCGTCACCGGAAAGCTGTTAGATTTTACACTGCCTGTTTTGGATTCAGACAACCATTTAAAGTCTTCTGTGATGGAACTTTTGTCCACCATCTTCTCTCCCATCAGATACTGCCAGCCAATGATGCCATTGCTAAAATTCTTGGGGCCCCGGTCAAGCTTTTCACTACTAGGTCTGTTCCTTTTATTGAGTTAAATCACATAATGGTTACTCCTATGACTTATTAGTTTTCATTATCTCATCACTTTGCAGATGTGTAATCTCAGAGTTGAAGGCTCTTGGCCAATCTTACTCTGAAGCTTTTGATGCAGCTAATTCGCTATTTACTGCAAGGTGAGCCACAAACATATTTCCATCATTGAATTTGAATGGTTTCTATTCATGATGACTGTTTCTGATTTTGTCATGTACTTGTGGTATTAGCGTTTGTTGATATGAGACACTGTAATTATTTGCTCGTTCAATTCTGTCTTTTCTGAGTTGAAATTACATCAATGTTAGATGCGACCATGAAAGGAGAAAGAGTGCCGAGGCATGCATCATTGATGTGATTGGTGAATCAAATGCCGAGCATTTTTTTGTTGCCACTCAAGATTCTCATCTTAGGAAGAAGCTTCAAGAGGTTAGTGTATTTTATGTATTGGTACCCAAAAATATTAATTTTCGATTACACCTATACTCCTTTCGTTTGCTTAAAATCTGATTATTTCACAATTGCAGCTTATGATCTTTTTTCAACCTTCTAGTTTATTAGTCGTTTCTAATTTCTGCTTTCTTTTCATATGCTAGGTTCGTTCAGCTTTTATAAAATATGCACTTAATTAGAAGTTCTCTTGGAAGTCTAATCATGTATAACTGGATCAGTATTTTTGTTATTGTTGGGCATTATTTTTATTATGTTTAGATTGAATTCTCCATGCCAGCTTGTATGGATGGATTTGTGAAGGGTTGAAAGTTTCAACTTGCTGCCATGTCTACGTGTAATTCTTTTATGTATATGTTAGCAGATACCTGGGGTCCCACTCATATTTGGTTTGAGAAATGCACTTTTCATGGAGCAACCGTCTGCTGTGGAACGCCAGTTCGTTAAATCTGCAGAAGAAAAAAGACTGCATATGTCTGAGGGGGAACGTAATCTATTAAAGAAAAAAATGAAGTACGAAGTGGAAACTGAGAAAAGTAACGAAGATGGAGATCTGGGGGATCAAAATTTAGAGACGCAAGTTTTGGAAAAGAAAAAGAAAAGAGTTCCAAATAATCTGAAGGATAGACCTCAATTTAAGAGAAAGAGAGCAAAGGTATTTTTCCATGACATTTTCTCTCTTCATTGTAGACTTGATTTTGTGCTTCAATTTGCATTATTGATTGATTAA

mRNA sequence

ATGAGATTCAAAAAGCAAAAGCGTCACCGGAAAGCTGTTAGATTTTACACTGCCTGTTTTGGATTCAGACAACCATTTAAAGTCTTCTGTGATGGAACTTTTGTCCACCATCTTCTCTCCCATCAGATACTGCCAGCCAATGATGCCATTGCTAAAATTCTTGGGGCCCCGGTCAAGCTTTTCACTACTAGATGTGTAATCTCAGAGTTGAAGGCTCTTGGCCAATCTTACTCTGAAGCTTTTGATGCAGCTAATTCGCTATTTACTGCAAGATGCGACCATGAAAGGAGAAAGAGTGCCGAGGCATGCATCATTGATGTGATTGGTGAATCAAATGCCGAGCATTTTTTTGTTGCCACTCAAGATTCTCATCTTAGGAAGAAGCTTCAAGAGATACCTGGGGTCCCACTCATATTTGGTTTGAGAAATGCACTTTTCATGGAGCAACCGTCTGCTGTGGAACGCCAGTTCGTTAAATCTGCAGAAGAAAAAAGACTGCATATGTCTGAGGGGGAACGTAATCTATTAAAGAAAAAAATGAAGTACGAAGTGGAAACTGAGAAAAGTAACGAAGATGGAGATCTGGGGGATCAAAATTTAGAGACGCAAGTTTTGGAAAAGAAAAAGAAAAGAGTTCCAAATAATCTGAAGGATAGACCTCAATTTAAGAGAAAGAGAGCAAAGGTATTTTTCCATGACATTTTCTCTCTTCATTGTAGACTTGATTTTGTGCTTCAATTTGCATTATTGATTGATTAA

Coding sequence (CDS)

ATGAGATTCAAAAAGCAAAAGCGTCACCGGAAAGCTGTTAGATTTTACACTGCCTGTTTTGGATTCAGACAACCATTTAAAGTCTTCTGTGATGGAACTTTTGTCCACCATCTTCTCTCCCATCAGATACTGCCAGCCAATGATGCCATTGCTAAAATTCTTGGGGCCCCGGTCAAGCTTTTCACTACTAGATGTGTAATCTCAGAGTTGAAGGCTCTTGGCCAATCTTACTCTGAAGCTTTTGATGCAGCTAATTCGCTATTTACTGCAAGATGCGACCATGAAAGGAGAAAGAGTGCCGAGGCATGCATCATTGATGTGATTGGTGAATCAAATGCCGAGCATTTTTTTGTTGCCACTCAAGATTCTCATCTTAGGAAGAAGCTTCAAGAGATACCTGGGGTCCCACTCATATTTGGTTTGAGAAATGCACTTTTCATGGAGCAACCGTCTGCTGTGGAACGCCAGTTCGTTAAATCTGCAGAAGAAAAAAGACTGCATATGTCTGAGGGGGAACGTAATCTATTAAAGAAAAAAATGAAGTACGAAGTGGAAACTGAGAAAAGTAACGAAGATGGAGATCTGGGGGATCAAAATTTAGAGACGCAAGTTTTGGAAAAGAAAAAGAAAAGAGTTCCAAATAATCTGAAGGATAGACCTCAATTTAAGAGAAAGAGAGCAAAGGTATTTTTCCATGACATTTTCTCTCTTCATTGTAGACTTGATTTTGTGCTTCAATTTGCATTATTGATTGATTAA

Protein sequence

MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKLFTTRCVISELKALGQSYSEAFDAANSLFTARCDHERRKSAEACIIDVIGESNAEHFFVATQDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLKKKMKYEVETEKSNEDGDLGDQNLETQVLEKKKKRVPNNLKDRPQFKRKRAKVFFHDIFSLHCRLDFVLQFALLID

Homology

[Close]

BLAST of Spg008392 vs. NCBI nr
Match: XP_011655276.1 (rRNA-processing protein UTP23 homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 6.3e-94
Identity = 177/228 (77.63%), Postives = 205/228 (89.91%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           MR KKQKR R+AVRFYT C GFR PFK+FCDGTFV+HLLS+QI+PA++A+AK +G  VKL
Sbjct: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDHERRKSAEACIIDVIGESNAEHFFVAT 120
           FTTRCV+ ELKALGQSYS AF+AA+ LFTARCDHE+RKSAEACI+DVIGESN EHFFVAT
Sbjct: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120

Query: 121 QDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLKKKM 180
           QD++LRK+LQ+IPGVPLIFGLRNALFMEQPS V+RQFVKS EEKR+H+SE ER+LLKKK 
Sbjct: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180

Query: 181 KYEVETEKSNEDGDLGDQNLETQVLEKKKKRVPNNLKDRPQFKRKRAK 229
           KY VE EK+NED DL DQNL+T VL+KKKK +P+NLKDRPQFKR +AK
Sbjct: 181 KYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAK 228

[Close]

BLAST of Spg008392 vs. NCBI nr
Match: XP_004143766.1 (rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_011655273.1 rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_011655274.1 rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_031742195.1 rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_031742196.1 rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_031742197.1 rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_031742198.1 rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >KAE8648473.1 hypothetical protein Csa_007759 [Cucumis sativus])

HSP 1 Score: 354.8 bits (909), Expect = 6.3e-94
Identity = 177/228 (77.63%), Postives = 205/228 (89.91%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           MR KKQKR R+AVRFYT C GFR PFK+FCDGTFV+HLLS+QI+PA++A+AK +G  VKL
Sbjct: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDHERRKSAEACIIDVIGESNAEHFFVAT 120
           FTTRCV+ ELKALGQSYS AF+AA+ LFTARCDHE+RKSAEACI+DVIGESN EHFFVAT
Sbjct: 61  FTTRCVLLELKALGQSYSGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120

Query: 121 QDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLKKKM 180
           QD++LRK+LQ+IPGVPLIFGLRNALFMEQPS V+RQFVKS EEKR+H+SE ER+LLKKK 
Sbjct: 121 QDTNLRKQLQQIPGVPLIFGLRNALFMEQPSDVQRQFVKSLEEKRMHVSEVERDLLKKKT 180

Query: 181 KYEVETEKSNEDGDLGDQNLETQVLEKKKKRVPNNLKDRPQFKRKRAK 229
           KY VE EK+NED DL DQNL+T VL+KKKK +P+NLKDRPQFKR +AK
Sbjct: 181 KYVVEAEKTNEDEDLEDQNLDTLVLKKKKKNIPSNLKDRPQFKRNKAK 228

[Close]

BLAST of Spg008392 vs. NCBI nr
Match: XP_008465424.1 (PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465433.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465440.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465448.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465455.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465460.1 PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo])

HSP 1 Score: 352.4 bits (903), Expect = 3.1e-93
Identity = 177/228 (77.63%), Postives = 204/228 (89.47%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           MR KKQKR R+AVRFYT C GFR PFK+FCDGTFV+HLLS+QI+PA++A+AK +G  VKL
Sbjct: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDHERRKSAEACIIDVIGESNAEHFFVAT 120
           FTTRCV+ ELKALGQSY+ AF+AA+ LFTARCDHE+RKSAEACI+DVIGESN EHFFVAT
Sbjct: 61  FTTRCVLLELKALGQSYAGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120

Query: 121 QDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLKKKM 180
           QD++LRK+LQ+IPGVPLIFGLRN LFMEQPS V+RQFVKS EEKR+HMSE ER+LLKKKM
Sbjct: 121 QDTNLRKQLQQIPGVPLIFGLRNTLFMEQPSDVQRQFVKSLEEKRMHMSEAERDLLKKKM 180

Query: 181 KYEVETEKSNEDGDLGDQNLETQVLEKKKKRVPNNLKDRPQFKRKRAK 229
           KY VE EK+NED DLGDQNL+ QVL KKKK + +NLKDRPQFKR +AK
Sbjct: 181 KYVVEAEKTNEDEDLGDQNLDAQVL-KKKKNILSNLKDRPQFKRNKAK 227

[Close]

BLAST of Spg008392 vs. NCBI nr
Match: XP_022141733.1 (rRNA-processing protein UTP23 homolog [Momordica charantia])

HSP 1 Score: 350.9 bits (899), Expect = 9.1e-93
Identity = 177/228 (77.63%), Postives = 204/228 (89.47%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           MRFK+QKRHR+ VRFY ACFGFRQPFKV CDGTFVHHLLS++I+PA++A+AK +G P+KL
Sbjct: 1   MRFKRQKRHRRVVRFYAACFGFRQPFKVLCDGTFVHHLLSNRIVPADNALAKTIGGPIKL 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDHERRKSAEACIIDVIGESNAEHFFVAT 120
           FTTRCV+SELKALGQSYSEAFDAA+ L  ARCDHERRKSAEACI DVIGESNAEHFFVAT
Sbjct: 61  FTTRCVLSELKALGQSYSEAFDAASRLLIARCDHERRKSAEACISDVIGESNAEHFFVAT 120

Query: 121 QDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLKKKM 180
           QD+ LRKKLQEIPGVPL++GLRNALFMEQPS ++RQFVKS+EE+RLHMSE ER+LLKK+ 
Sbjct: 121 QDTDLRKKLQEIPGVPLVYGLRNALFMEQPSVLQRQFVKSSEEERLHMSELERDLLKKR- 180

Query: 181 KYEVETEKSNEDGDLGDQNLETQVLEKKKKRVPNNLKDRPQFKRKRAK 229
           KY VETE++NED  LGDQNLETQ +  KK+   N LKD+ QFKRK+AK
Sbjct: 181 KYRVETEETNEDRGLGDQNLETQAM--KKRSTSNELKDKIQFKRKKAK 225

[Close]

BLAST of Spg008392 vs. NCBI nr
Match: KAG7032659.1 (rRNA-processing protein UTP23-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335.5 bits (859), Expect = 4.0e-88
Identity = 175/231 (75.76%), Postives = 202/231 (87.45%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           MRFKKQKRHRKAVRFYT CFGFR+PFKV CDGTFVHHLLS+QILPA+ A+AK+LG  VK+
Sbjct: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDHERRKSAEACIIDVIGESNAEHFFVAT 120
           FTTRCV+ ELKALG SYS+AF+AA++L TARCDHE RK A  CI++VIG+SNAEHFFVAT
Sbjct: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120

Query: 121 QDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLKKKM 180
           QD+ L+K+LQEIPGVPLIFGLRNALFMEQP+A+ERQFVKS+EEKR H+SE E NLL+K  
Sbjct: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLRKVT 180

Query: 181 K-YEVETEKSNEDGDLGDQNLETQVLEKKKKRVP--NNLKDRPQFKRKRAK 229
           K  E ETEK+NEDGDL D+N E QVLEKKKK+    N+LKDRPQFKRK+ K
Sbjct: 181 KDDEEETEKTNEDGDLVDKNSEMQVLEKKKKKKGNLNDLKDRPQFKRKKTK 231

[Close]

BLAST of Spg008392 vs. ExPASy Swiss-Prot
Match: Q9BRU9 (rRNA-processing protein UTP23 homolog OS=Homo sapiens OX=9606 GN=UTP23 PE=1 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 2.3e-22
Identity = 73/233 (31.33%), Postives = 119/233 (51.07%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           M+  +QK  +K + F+   FG R+P+++  DGTF    L  +I    + + + L    +L
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRI-QLREQLPRYLMGETQL 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDH-ERRKSAEACIIDVIGESNAEHFFVA 120
            TTRCV+ EL+ LG+    A   A       C H +   S   C++ ++ E N  H+FVA
Sbjct: 61  CTTRCVLKELETLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEEGNPHHYFVA 120

Query: 121 TQDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRL---HMSEGERNLL 180
           TQD +L  K+++ PGVPL+F ++N + +++PS     FVK+ E  +L   H  E  ++ L
Sbjct: 121 TQDQNLSVKVKKKPGVPLMFIIQNTMVLDKPSPKTIAFVKAVESGQLVSVHEKESIKH-L 180

Query: 181 KKKMKYEVETEKSNEDGDLGDQNLETQVLEKKKKRVPNNLKDRPQFKRKRAKV 230
           K++      TE+S                 KKKK+ P+      + KRKR ++
Sbjct: 181 KEEQGLVKNTEQSRRKKRKKISGPNPLSCLKKKKKAPDTQSSASEKKRKRKRI 231

[Close]

BLAST of Spg008392 vs. ExPASy Swiss-Prot
Match: Q9CX11 (rRNA-processing protein UTP23 homolog OS=Mus musculus OX=10090 GN=Utp23 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.0e-21
Identity = 69/217 (31.80%), Postives = 113/217 (52.07%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           M+  +QK  +K + F+   FG R+P+++  DGTF    L  +I    D + + L    +L
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRI-QLRDQLPRYLMGETQL 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDHERRK-SAEACIIDVIGESNAEHFFVA 120
            TTRCV+ EL+ LG+    A   A       C H +   S   C++ ++ E N  H+FVA
Sbjct: 61  CTTRCVLKELETLGKELYGAKLIAQKCQVRNCPHFKSPVSGSECLLSMVDEGNPHHYFVA 120

Query: 121 TQDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLKKK 180
           TQD +L  K++  PG+PL+F ++N + +++PS     FVK+ E  +L +S  E+  +K  
Sbjct: 121 TQDQNLSVKVKRTPGIPLMFIIQNTIVLDKPSPRTVAFVKAVEAGQL-VSVHEKQSIK-- 180

Query: 181 MKYEVETEKSNEDGDLGDQNLETQVLEKKKKRVPNNL 217
                  +   E G + + +L  +  +KKK   PN L
Sbjct: 181 -------QLKEEQGLVRNPDLRRRRRKKKKVGGPNPL 206

[Close]

BLAST of Spg008392 vs. ExPASy Swiss-Prot
Match: Q08DU1 (rRNA-processing protein UTP23 homolog OS=Bos taurus OX=9913 GN=UTP23 PE=2 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.4e-21
Identity = 68/233 (29.18%), Postives = 123/233 (52.79%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           M+  +QK  +K + F+   FG R+P+++  DGTF    L  +I    + + + L A  +L
Sbjct: 1   MKITRQKHAKKHLGFFRNNFGVREPYQILLDGTFCQAALRGRI-QLREQLPRYLMAETQL 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDH-ERRKSAEACIIDVIGESNAEHFFVA 120
            TTRCV+ EL+ LG+    A   A       C H +   S   C++ ++ + N  H+F+A
Sbjct: 61  CTTRCVLKELETLGKDLYGAKLIAQKCQVRNCPHFKNAVSGSECLLSMVEDGNPHHYFLA 120

Query: 121 TQDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRL---HMSEGERNLL 180
           TQD +L  K+++ PG+PL+F ++N + +++PS     FVK+ E  +L   H  +  R L 
Sbjct: 121 TQDQNLSMKVKKKPGIPLMFIIQNTIVLDKPSPKTIAFVKAVESGQLVSVHEKQSIRQLK 180

Query: 181 KKK-MKYEVETEKSNEDGDLGDQNLETQVLEKKKKRVPNNLKDRPQFKRKRAK 229
           +++ +  + E  +  +   +   N  + + +KKK +  N+     + KRKR +
Sbjct: 181 EEQGLVKDPEQRRRKKRKKVSGPNPLSCLKKKKKTQDTNSSASEKKRKRKRIR 232

[Close]

BLAST of Spg008392 vs. ExPASy Swiss-Prot
Match: O74862 (rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp23 PE=3 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 6.5e-17
Identity = 69/225 (30.67%), Postives = 106/225 (47.11%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           MR K+ K +RK +  Y   FGFR+P++V  D  F+   LS Q +    A+A+ +   +K 
Sbjct: 1   MRQKRAKNYRKLMHTYQLLFGFREPYQVLVDADFLKD-LSQQKIDIQAALARTVQGAIKP 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDH-ERRKSAEACIIDV--IGESNAEHFF 120
             T+C I +L +      +    A S    RC H +   S   CI  V  I   N   + 
Sbjct: 61  MITQCCIRQLYSKSDELKQEIRIAKSFERRRCGHIDEALSPSECIQSVVNINGRNKHRYV 120

Query: 121 VATQDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLK 180
           VATQD  LR+ L+ +PGVPLI+  R+ + +E  S        + E  ++ MS+ E+ LL 
Sbjct: 121 VATQDPELRQALRSVPGVPLIYMKRSVVILEPASRATLLEKHNKESVQMGMSKEEKLLLS 180

Query: 181 KKMK----YEVETEKSNEDGDLGDQNLETQVLEKKKK--RVPNNL 217
            K +      ++ + + E  DL           KK+K  + PN L
Sbjct: 181 GKKRSANELAIDDQDTKESTDLAGTEDSAPKANKKRKGPKGPNPL 224

[Close]

BLAST of Spg008392 vs. ExPASy Swiss-Prot
Match: Q12339 (rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UTP23 PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 4.4e-13
Identity = 71/237 (29.96%), Postives = 120/237 (50.63%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQI-LPANDAIAKILGAPVK 60
           MR K+ K +RK +  Y+  F FR+P++V  D   V    +    LP+   + + L A VK
Sbjct: 1   MRQKRAKSYRKQLLVYSHTFKFREPYQVLVDNQLVLECNNSNFNLPS--GLKRTLQADVK 60

Query: 61  LFTTRCVISELKALGQSYSE-AFDAANSLFTARCDHERR--KSAEACIIDVIGES--NAE 120
           +  T+C I   +AL ++ ++ A + A      RC+H  +  KS   CI  V+  S  N  
Sbjct: 61  VMITQCCI---QALYETRNDGAINLAKQFERRRCNHSFKDPKSPAECIESVVNISGANKH 120

Query: 121 HFFVATQDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERN 180
            + VA+QD  LR+KL+ +PGVPLI   R+ + ME  S    +  K  EE++L+    + N
Sbjct: 121 RYVVASQDIDLRRKLRTVPGVPLIHLTRSVMVMEPLSTASAKASKITEEQKLYKGLNDPN 180

Query: 181 LLKKKMKYEVETEKS-NEDGDLGDQNLETQVLEKKKK--RVPNNLKDRPQFKRKRAK 229
           + K +   +   ++S  +   LG +      ++KKKK     + +KD+    +++ K
Sbjct: 181 IEKLQESGDGSGKESITKKRKLGPKAPNPLSVKKKKKVNSPSDEVKDKEDTSKEKKK 232

[Close]

BLAST of Spg008392 vs. ExPASy TrEMBL
Match: A0A1S3CNY6 (rRNA-processing protein UTP23 homolog OS=Cucumis melo OX=3656 GN=LOC103503039 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.5e-93
Identity = 177/228 (77.63%), Postives = 204/228 (89.47%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           MR KKQKR R+AVRFYT C GFR PFK+FCDGTFV+HLLS+QI+PA++A+AK +G  VKL
Sbjct: 1   MRIKKQKRQRRAVRFYTTCCGFRPPFKIFCDGTFVNHLLSNQIMPADEAVAKTVGDRVKL 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDHERRKSAEACIIDVIGESNAEHFFVAT 120
           FTTRCV+ ELKALGQSY+ AF+AA+ LFTARCDHE+RKSAEACI+DVIGESN EHFFVAT
Sbjct: 61  FTTRCVLLELKALGQSYAGAFEAASQLFTARCDHEKRKSAEACILDVIGESNPEHFFVAT 120

Query: 121 QDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLKKKM 180
           QD++LRK+LQ+IPGVPLIFGLRN LFMEQPS V+RQFVKS EEKR+HMSE ER+LLKKKM
Sbjct: 121 QDTNLRKQLQQIPGVPLIFGLRNTLFMEQPSDVQRQFVKSLEEKRMHMSEAERDLLKKKM 180

Query: 181 KYEVETEKSNEDGDLGDQNLETQVLEKKKKRVPNNLKDRPQFKRKRAK 229
           KY VE EK+NED DLGDQNL+ QVL KKKK + +NLKDRPQFKR +AK
Sbjct: 181 KYVVEAEKTNEDEDLGDQNLDAQVL-KKKKNILSNLKDRPQFKRNKAK 227

[Close]

BLAST of Spg008392 vs. ExPASy TrEMBL
Match: A0A6J1CLD6 (rRNA-processing protein UTP23 homolog OS=Momordica charantia OX=3673 GN=LOC111012016 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 4.4e-93
Identity = 177/228 (77.63%), Postives = 204/228 (89.47%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           MRFK+QKRHR+ VRFY ACFGFRQPFKV CDGTFVHHLLS++I+PA++A+AK +G P+KL
Sbjct: 1   MRFKRQKRHRRVVRFYAACFGFRQPFKVLCDGTFVHHLLSNRIVPADNALAKTIGGPIKL 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDHERRKSAEACIIDVIGESNAEHFFVAT 120
           FTTRCV+SELKALGQSYSEAFDAA+ L  ARCDHERRKSAEACI DVIGESNAEHFFVAT
Sbjct: 61  FTTRCVLSELKALGQSYSEAFDAASRLLIARCDHERRKSAEACISDVIGESNAEHFFVAT 120

Query: 121 QDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLKKKM 180
           QD+ LRKKLQEIPGVPL++GLRNALFMEQPS ++RQFVKS+EE+RLHMSE ER+LLKK+ 
Sbjct: 121 QDTDLRKKLQEIPGVPLVYGLRNALFMEQPSVLQRQFVKSSEEERLHMSELERDLLKKR- 180

Query: 181 KYEVETEKSNEDGDLGDQNLETQVLEKKKKRVPNNLKDRPQFKRKRAK 229
           KY VETE++NED  LGDQNLETQ +  KK+   N LKD+ QFKRK+AK
Sbjct: 181 KYRVETEETNEDRGLGDQNLETQAM--KKRSTSNELKDKIQFKRKKAK 225

[Close]

BLAST of Spg008392 vs. ExPASy TrEMBL
Match: A0A6J1JT87 (rRNA-processing protein UTP23 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111487635 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.8e-86
Identity = 173/231 (74.89%), Postives = 200/231 (86.58%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           MRFKKQKRHRKAVRFYT CFGFR+PFKV CDGTFVHHLLS+QILPA+ A+AK+LG  VK+
Sbjct: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDHERRKSAEACIIDVIGESNAEHFFVAT 120
           FTTRCV+ ELKALG SYS+AF+AA++L TARCDHE RK A  CI++VIG+SNAEHFFVAT
Sbjct: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120

Query: 121 QDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLKKKM 180
           QD+ L+K+LQEIPGVPLIFGLRNALFMEQP+A+ERQFVKS+EEKR H+SE E NLL+K  
Sbjct: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLQKVT 180

Query: 181 K-YEVETEKSNEDGDLGDQNLETQVLEKKKKRVP--NNLKDRPQFKRKRAK 229
           K  E ETE +NEDGDL  +N E QVLEKKKK+    N+LKDRPQFKRK+ K
Sbjct: 181 KDDEEETEITNEDGDLVGKNSEMQVLEKKKKKRGNLNDLKDRPQFKRKKTK 231

[Close]

BLAST of Spg008392 vs. ExPASy TrEMBL
Match: A0A6J1JRB3 (rRNA-processing protein UTP23 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111487635 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.8e-86
Identity = 173/231 (74.89%), Postives = 200/231 (86.58%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           MRFKKQKRHRKAVRFYT CFGFR+PFKV CDGTFVHHLLS+QILPA+ A+AK+LG  VK+
Sbjct: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDHERRKSAEACIIDVIGESNAEHFFVAT 120
           FTTRCV+ ELKALG SYS+AF+AA++L TARCDHE RK A  CI++VIG+SNAEHFFVAT
Sbjct: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120

Query: 121 QDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLKKKM 180
           QD+ L+K+LQEIPGVPLIFGLRNALFMEQP+A+ERQFVKS+EEKR H+SE E NLL+K  
Sbjct: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLQKVT 180

Query: 181 K-YEVETEKSNEDGDLGDQNLETQVLEKKKKRVP--NNLKDRPQFKRKRAK 229
           K  E ETE +NEDGDL  +N E QVLEKKKK+    N+LKDRPQFKRK+ K
Sbjct: 181 KDDEEETEITNEDGDLVGKNSEMQVLEKKKKKRGNLNDLKDRPQFKRKKTK 231

[Close]

BLAST of Spg008392 vs. ExPASy TrEMBL
Match: A0A6J1E579 (rRNA-processing protein UTP23 homolog isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111430840 PE=4 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.8e-86
Identity = 173/231 (74.89%), Postives = 200/231 (86.58%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           MRFKKQKRHRKAVRFYT CFGFR+PFKV CDGTFVHHLLS+QILPA+ A+AK+LG  VK+
Sbjct: 1   MRFKKQKRHRKAVRFYTTCFGFREPFKVLCDGTFVHHLLSNQILPADAALAKVLGGRVKV 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDHERRKSAEACIIDVIGESNAEHFFVAT 120
           FTTRCV+ ELKALG SYS+AF+AA++L TARCDHE RK A  CI++VIG+SNAEHFFVAT
Sbjct: 61  FTTRCVLLELKALGPSYSKAFEAASNLSTARCDHEIRKHAVTCIMEVIGKSNAEHFFVAT 120

Query: 121 QDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLKKKM 180
           QD+ L+K+LQEIPGVPLIFGLRNALFMEQP+A+ERQFVKS+EEKR H+SE E NLL+K  
Sbjct: 121 QDTDLKKQLQEIPGVPLIFGLRNALFMEQPTALERQFVKSSEEKRSHISEVELNLLQKVT 180

Query: 181 K-YEVETEKSNEDGDLGDQNLETQVLEKKKKRVP--NNLKDRPQFKRKRAK 229
           K  E ETE +NEDGDL  +N E QVLEKKKK+    N+LKDRPQFKRK+ K
Sbjct: 181 KDDEEETEITNEDGDLVGKNSEMQVLEKKKKKRGNLNDLKDRPQFKRKKTK 231

[Close]

BLAST of Spg008392 vs. TAIR 10
Match: AT2G34570.1 (PIN domain-like family protein )

HSP 1 Score: 223.4 bits (568), Expect = 2.0e-58
Identity = 111/228 (48.68%), Postives = 164/228 (71.93%), Query Frame = 0


Query: 1   MRFKKQKRHRKAVRFYTACFGFRQPFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKL 60
           MR K+QK++R+ VRF+T C+GFRQP+KV CDGTFVHHL++++I PA+ A++++LG PVKL
Sbjct: 1   MRVKRQKKNRRTVRFFTVCYGFRQPYKVLCDGTFVHHLVTNEITPADTAVSELLGGPVKL 60

Query: 61  FTTRCVISELKALGQSYSEAFDAANSLFTARCDHERRKSAEACIIDVIGESNAEHFFVAT 120
           FTTRCVI+EL+ LG+ ++E+ +AA +L TA C+HE  K+A+ C+ +VIG  N EHFF+ T
Sbjct: 61  FTTRCVIAELEKLGKDFAESLEAAQTLNTATCEHEEAKTADECLSEVIGVQNTEHFFLGT 120

Query: 121 QDSHLRKKLQEIPGVPLIFGLRNALFMEQPSAVERQFVKSAEEKRLHMSEGERNLLKKKM 180
           QD+  R+KLQ+   VPL+FGLRN L ++QPS  +RQ  K +E KRL M++ E+ LL K+ 
Sbjct: 121 QDAEFRRKLQQESIVPLVFGLRNILLIDQPSDFQRQSAKDSENKRLTMTDTEKKLLVKRT 180

Query: 181 KYEVETEKSNEDGDLGDQNLETQVLEKKKKRVPNNLKDRPQFKRKRAK 229
              + + +  ++  + ++      +   K  +   +KDRPQFKR RAK
Sbjct: 181 AKIIASNR--KEATIANEEWGMPRVVSTKNGL--GVKDRPQFKRNRAK 224

[Close]

BLAST of Spg008392 vs. TAIR 10
Match: AT2G46230.1 (PIN domain-like family protein )

HSP 1 Score: 54.7 bits (130), Expect = 1.3e-07
Identity = 35/117 (29.91%), Postives = 61/117 (52.14%), Query Frame = 0


Query: 25  PFKVFCDGTFVHHLLSHQILPANDAIAKILGAPVKLFTTRCVISELKALGQSYSEAFDAA 84
           P++V  D  F++  + ++I      +   L A      T CV++EL+ LGQ Y  A   A
Sbjct: 62  PYRVLVDTNFINFSIQNKI-DLEKGMRDCLYANCTPCITDCVMAELEKLGQKYRVALRIA 121

Query: 85  NSLFTAR--CDHERRKSAEACIIDVIGESNAEHFFVATQDSHLRKKLQEIPGVPLIF 140
                 R  C H +   A+ C++D + +     F VAT D  L++++++IPGVP+++
Sbjct: 122 KDPHFERLPCIH-KGTYADDCLVDRVTQHKC--FIVATCDRDLKRRIRKIPGVPIMY 174

The following BLAST results are available for this feature:

BLAST of Spg008392 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011655276.1	6.3e-94	77.63	rRNA-processing protein UTP23 homolog isoform X2 [Cucumis sativus]	[more]
XP_004143766.1	6.3e-94	77.63	rRNA-processing protein UTP23 homolog isoform X1 [Cucumis sativus] >XP_011655273...	[more]
XP_008465424.1	3.1e-93	77.63	PREDICTED: rRNA-processing protein UTP23 homolog [Cucumis melo] >XP_008465433.1 ...	[more]
XP_022141733.1	9.1e-93	77.63	rRNA-processing protein UTP23 homolog [Momordica charantia]	[more]
KAG7032659.1	4.0e-88	75.76	rRNA-processing protein UTP23-like protein [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of Spg008392 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9BRU9	2.3e-22	31.33	rRNA-processing protein UTP23 homolog OS=Homo sapiens OX=9606 GN=UTP23 PE=1 SV=2	[more]
Q9CX11	2.0e-21	31.80	rRNA-processing protein UTP23 homolog OS=Mus musculus OX=10090 GN=Utp23 PE=2 SV=...	[more]
Q08DU1	7.4e-21	29.18	rRNA-processing protein UTP23 homolog OS=Bos taurus OX=9913 GN=UTP23 PE=2 SV=1	[more]
O74862	6.5e-17	30.67	rRNA-processing protein utp23 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
Q12339	4.4e-13	29.96	rRNA-processing protein UTP23 OS=Saccharomyces cerevisiae (strain ATCC 204508 / ...	[more]

BLAST of Spg008392 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CNY6	1.5e-93	77.63	rRNA-processing protein UTP23 homolog OS=Cucumis melo OX=3656 GN=LOC103503039 PE...	[more]
A0A6J1CLD6	4.4e-93	77.63	rRNA-processing protein UTP23 homolog OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A6J1JT87	1.8e-86	74.89	rRNA-processing protein UTP23 homolog isoform X1 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1JRB3	1.8e-86	74.89	rRNA-processing protein UTP23 homolog isoform X2 OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A6J1E579	1.8e-86	74.89	rRNA-processing protein UTP23 homolog isoform X1 OS=Cucurbita moschata OX=3662 G...	[more]

BLAST of Spg008392 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34570.1	2.0e-58	48.68	PIN domain-like family protein	[more]
AT2G46230.1	1.3e-07	29.91	PIN domain-like family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006984	rRNA-processing protein Fcf1/Utp23	PFAM	PF04900	Fcf1	coord: 52..149 e-value: 1.6E-26 score: 92.5
None	No IPR available	GENE3D	3.40.50.1010		coord: 1..157 e-value: 7.1E-49 score: 167.5
None	No IPR available	PANTHER	PTHR12416	UNCHARACTERIZED	coord: 1..218
None	No IPR available	PANTHER	PTHR12416:SF3	RRNA-PROCESSING PROTEIN UTP23 HOMOLOG	coord: 1..218
None	No IPR available	CDD	cd08553	PIN_Fcf1-like	coord: 26..148 e-value: 2.41853E-52 score: 164.291
IPR029060	PIN-like domain superfamily	SUPERFAMILY	88723	PIN domain-like	coord: 25..150

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008392.1	Spg008392.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0016020	membrane
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0032040	small-subunit processome
molecular_function	GO:0070181	small ribosomal subunit rRNA binding