Spg008247 (gene) Sponge gourd (cylindrica) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGAAAGAAGAGCCACCTGATACCAGAACTCTCAAACATAAACGGCCTAGGCGATTCGAGGAAGTTTGGACAAAATATGAGGATTGGCAGGGAGATCGTTAAGCAAGCTTGGACTATATCTGAGAGAGGCGGCAGACTTTCTCTAGTTGATAAGCTTGGGAGATGCCTAAGTCAGTTAGACCAGTGGAGCAGACGAAAGTACAAGGGCTCCATTAGGGAGCTATAGCTAGAAAGGAAAGTGAAATATAGGGGCTGTTGAATCAAGGGACTCAGTGCGATGAGTTGGATGTGGTCAGGAAAGAAAAACAGTTAGAAATCTCCTAGATGACGATGAGATATACTGGAAACAACGGGCTCAGGACGATTGGTTAACTGAGGGGACAGAAATACTAGATGGTTTCACATGAAGGCAAATAGCAGAAAGAAGGTCAACAAAATTTGCGGACTCTACGATGCAAGTGGGGGTTGGGTGGAGACCGATGAGGATATGGAGAGGGTTGCCAACAACTATTTTCAAGCTCTGTTTCAATCGTCTAGCCCCCACTTGGATGCCATTGATGACATCCTGGAGGTGACCCCTGTTTGTATTTCAGAGGTCCAAAACAGGAAGCTCTTGGTTCCGTTCACTAGGGAGGAGATTTATGGAGTAGTTAAGAGTATGCATCCTACTAAGGCTCCGGGCCCTGATGGATGCAAGCTATTTTTCTACCAGAAATACTGGGATGTGGTAGGACGAGATATTGTGACTTCTGCCTGCAATTCCTGAATGGGGAAGGCCAGATAGATAGAATAAACAAGACATACATTGTTTTGATCCCGAAGGTAAAGGAGCCAAAAACCATGAAGGATTCAGACCTATAAGTTTGTGCTCGGTGATCTACAAAATTATATCCAAGGTACTAGCGAATAGGCTAAAACAGGTGTTGAATCATATAATTTCCCCTAGTCAATCAGCGTTTGTCCCTGGAAGGCTCATAACTGATAATGCGCTTGTCGGGTTTGAATGCATTCATGCTGTAAATTCCAAAAAGAAAGGTAAATCAGGGGTTGTGGCTCTCAAATTGGATATGAGCAAGGCTTATGACCGGGTAGAATGGGTTTATCTTCGTAAGTTGATGGCTAAGTTGGGGTTCGAGGACAGATGGATTGCTCTTATCATGCAATGTGTGGAGTCGGTCAGCTTCCAGGTGCTTTTGAATGGAGTTCCAAGAGCTGAGTTCTCTCCCAAGAGAGGGCTCCGTCAGGGTGACCCTCTATCCCCTTATTTGTTCATCATGTGCGCAGAAGGCTTATCCAGGCTCCTCAACTACTCAGAATCCAAAAAACTGATGACAAGTTTGCGAATAAATAGGTACTGTCCTAGTGTGACTCATTTATTCTATGCAGATGATAGTTTACTATTTTTTGAGGCCTCTGAGAATGATTGCATTAATATTAAGAAAACTCTTGAAACTTATGAGAAGGCGTCTGGGCAGATTATAAATTTTGATAAATCCAACTTCATGACTAGTCCTAATACTAACTGTGATCTAGCTAGAAAGATCGAGAATATTTTGCAGGTTTCACACACGGAGAGCTTGGGGCAATACCTGGGGTTCCCGTCACAGAATGCTAGAAGCCAGAAGGGAAATTTTCAACCACATCAAGGATCGAGTCTGGAGAGTACTACAGGATGGAAAGGGAGGTTCTTCTCAGCTGCTGGAAGGGAGATTCTAATTAAATCAGTGGCCCAAGCCATTCCTAACTATGCAATGAGCTGTTTTAAATTCCCTATGTCTCTCTGTAATGAACTTAATTCCATGTGTGCCAGGTTTTGGTGGGGAGTGGAGGACAAAAAGAGCAAGATTCATTGGAGAAGTTGGAAAAAGTTGTGCATCAACAAAAGGCTTGGAGGCATGGGATTTAGAGATATTTCGGTGTTCAACCAGGCGATGTTAGCCAAGCAGAGTTGGAGGATAATTCACAATCCGAATAGCCTCCTGACGAGAGTCCTCAGAGGCAGATATTTTAAGAATGGAAATTTCCTAAAGGCGGAGATGGGAAACAATCCTTCTTTCACGTGGAGAAGCATTGTGTGGGGGGAGGGAGTGTTTCGGAAAGGCTACAGATGGCGAATAGGGGATGGATTCAATGTGGATGAGGGGTCAGATCCTTGGATCCCAAAAGATGGTGATTGCAAGCCACTGCTAGTTCATAGAAACGTTCAACAGTTTTCAGTAGCTCAACTAATTCAACCCTCGGGGGTTGGAATGAGTCACTGGTTAAGGGGCTGTTTTTGGAGAGCAATGCTAAAGCCATTTTAAATATCCTCTCAGTCCGCTGAACAAGGAGGATTCTATTATTTGGCATCATGATACAAAAGGATTCTTTTCTGTGAAAAGCGCGTATAGACTGGGGATCCAGGTTCAAGCATCCAATGAGGCGTCAATATCTCACAATGGGAAGATGGAAGCTCTATGGGATATATATTGGAAAACCCCAGTTCCCCCCAAAATCAGAGTGTGCAGGTGGACAATTTTTCATGACATCCTCCCAACTCGCACAAATCTTATTAAAAGGGGAATGGAAGTTAACCCACTGTGTATTTTGTGCAAGACAAAGCTGGAAACGATCACACATCTGCTGTGGGGAGTGCAATCAAACAAAGGTATGTGGGCTCAATTCTTCCCTTTGCCTAATAGTTTGTTTCTGATGAACAGGGAAAGCTTGGTCGGCGGCGGATTATTGTGAATTCATTTGGAGAGGTGGTGATACGGATCAGTTAACAGAAATGAATATCAAGTGGAGCACAGTTATTTCTTGGCAGATTTGGAAATATAGAAACGAACTTCTCCATGGAAATTAGAATTTCAATCCAGAGTATTTCAAGCATCAAATGAGGAGAGCTATTGAGTATTTTACCGGCGATGTGAAGACCGATGGCCAGGCGGATTGGAGCGAGATCTCGAACAGACCCGTTGACATGGATCAAGCTACGCCGGAACACAGAGAGCCTGCCCCAACCGCGACAAATGATCGGCAAGCGACGATTGCGTCTGTTAGATGGATGCCGCCGGCGATGGGACTCTGGAAGTTGAACAATGACGCGTCCTGGAATGAGGAAAAGAAGTTAGGGGGAGTGGGCTGGGTGTTGCGAGATGAGAAAGGCAACCTGATTTCTACTGGTTTTCGGGTTCTTCATCAGCAGTGGCTGGAGGCCCTTGCCGTCTCAGATGGTTTGCGTTTGATTCCTATCGAGTCCCCTCTGGTGATTGTTGAGACCCCAAATTGGGGGTTTAGCTATAGATGGCTATAATATCCACAATGTATACAAAAGAAATCATAAATTTGAGCAAAATAAGAGGAAAGAAATGACCGTCGAGAACTCCGTCGCTAGCCCTTGCCTTCTAGAGTGCTCCCAAAAAGCTCCCCAAAATTTTCTCACTCTTAACTCTCAAAAAGGCTAAAAAGCCTTGAGAGAATGCTCAAAGAGAGCAATGGAAGGAAAGGAAGGAAAGGATGGTGAAATGATTGATGAGAAAATGGGCACCAAGGGGGTCAATTTATAGGCTTGGAATAGGGAAAGCGTCGCGACGCTGTGACGTCATCAACTTGTCCGCCAAGAAATGGGACAGCGTCGCGATGCTGTGCGGTTTCCAGAACTAGCAGGCGCGGATTTGGGCTTGAAACTTGGGCCAACTTCTATTCTTTTTGGATCTTCTCTTGCATGGTTGACTCTTGGGCTCCCCCTTTGA ATGGGAAAGAAGAGCCACCTGATACCAGAACTCTCAAACATAAACGGCCTAGGCGATTCGAGGAAGTTTGGACAAAATATGAGGATTGGCAGGGAGATCGTTAAGCAAGCTTGGACTATATCTGAGAGAGGCGGCAGACTTTCTCTAGTTGATAAGCTTGGGAGATGCCTAAGTCAGTTAGACCAGTGGAGCAGACGAAAATGGTTTCACATGAAGGCAAATAGCAGAAAGAAGGTCAACAAAATTTGCGGACTCTACGATGCAAGTGGGGGTTGGGTGGAGACCGATGAGGATATGGAGAGGGTTGCCAACAACTATTTTCAAGCTCTGTTTCAATCGTCTAGCCCCCACTTGGATGCCATTGATGACATCCTGGAGGTTCAAGCATCCAATGAGGCGTCAATATCTCACAATGGGAAGATGGAAGCTCTATGGGATATATATTGGAAAACCCCAGTTCCCCCCAAAATCAGAGTGTGCAGGTGGACAATTTTTCATGACATCCTCCCAACTCGCACAAATCTTATTAAAAGGGGAATGGAAGTTAACCCACTGTGTATTTTGTGCAAGACAAAGCTGGAAACGATCACACATCTGCTGTGGGGAGTGCAATCAAACAAAGAGTATTTCAAGCATCAAATGAGGAGAGCTATTGAGTATTTTACCGGCGATGTGAAGACCGATGGCCAGGCGGATTGGAGCGAGATCTCGAACAGACCCGTTGACATGGATCAAGCTACGCCGGAACACAGAGAGCCTGCCCCAACCGCGACAAATGATCGGCAAGCGACGATTGCGTCTGTTAGATGGATGCCGCCGGCGATGGGACTCTGGAAGTTGAACAATGACGCGTCCTGGAATGAGGAAAAGAAGTTAGGGGGAGTGGGCTGGGTGTTGCGAGATGAGAAAGGCAACCTGATTTCTACTGGTTTTCGGGTTCTTCATCAGCAGTGGCTGGAGGCCCTTGCCGTCTCAGATGGTTTGCGTTTGATTCCTATCGAGTCCCCTCTGCGTCGCGATGCTGTGCGGTTTCCAGAACTAGCAGGCGCGGATTTGGGCTTGAAACTTGGGCCAACTTCTATTCTTTTTGGATCTTCTCTTGCATGGTTGACTCTTGGGCTCCCCCTTTGA ATGGGAAAGAAGAGCCACCTGATACCAGAACTCTCAAACATAAACGGCCTAGGCGATTCGAGGAAGTTTGGACAAAATATGAGGATTGGCAGGGAGATCGTTAAGCAAGCTTGGACTATATCTGAGAGAGGCGGCAGACTTTCTCTAGTTGATAAGCTTGGGAGATGCCTAAGTCAGTTAGACCAGTGGAGCAGACGAAAATGGTTTCACATGAAGGCAAATAGCAGAAAGAAGGTCAACAAAATTTGCGGACTCTACGATGCAAGTGGGGGTTGGGTGGAGACCGATGAGGATATGGAGAGGGTTGCCAACAACTATTTTCAAGCTCTGTTTCAATCGTCTAGCCCCCACTTGGATGCCATTGATGACATCCTGGAGGTTCAAGCATCCAATGAGGCGTCAATATCTCACAATGGGAAGATGGAAGCTCTATGGGATATATATTGGAAAACCCCAGTTCCCCCCAAAATCAGAGTGTGCAGGTGGACAATTTTTCATGACATCCTCCCAACTCGCACAAATCTTATTAAAAGGGGAATGGAAGTTAACCCACTGTGTATTTTGTGCAAGACAAAGCTGGAAACGATCACACATCTGCTGTGGGGAGTGCAATCAAACAAAGAGTATTTCAAGCATCAAATGAGGAGAGCTATTGAGTATTTTACCGGCGATGTGAAGACCGATGGCCAGGCGGATTGGAGCGAGATCTCGAACAGACCCGTTGACATGGATCAAGCTACGCCGGAACACAGAGAGCCTGCCCCAACCGCGACAAATGATCGGCAAGCGACGATTGCGTCTGTTAGATGGATGCCGCCGGCGATGGGACTCTGGAAGTTGAACAATGACGCGTCCTGGAATGAGGAAAAGAAGTTAGGGGGAGTGGGCTGGGTGTTGCGAGATGAGAAAGGCAACCTGATTTCTACTGGTTTTCGGGTTCTTCATCAGCAGTGGCTGGAGGCCCTTGCCGTCTCAGATGGTTTGCGTTTGATTCCTATCGAGTCCCCTCTGCGTCGCGATGCTGTGCGGTTTCCAGAACTAGCAGGCGCGGATTTGGGCTTGAAACTTGGGCCAACTTCTATTCTTTTTGGATCTTCTCTTGCATGGTTGACTCTTGGGCTCCCCCTTTGA MGKKSHLIPELSNINGLGDSRKFGQNMRIGREIVKQAWTISERGGRLSLVDKLGRCLSQLDQWSRRKWFHMKANSRKKVNKICGLYDASGGWVETDEDMERVANNYFQALFQSSSPHLDAIDDILEVQASNEASISHNGKMEALWDIYWKTPVPPKIRVCRWTIFHDILPTRTNLIKRGMEVNPLCILCKTKLETITHLLWGVQSNKEYFKHQMRRAIEYFTGDVKTDGQADWSEISNRPVDMDQATPEHREPAPTATNDRQATIASVRWMPPAMGLWKLNNDASWNEEKKLGGVGWVLRDEKGNLISTGFRVLHQQWLEALAVSDGLRLIPIESPLRRDAVRFPELAGADLGLKLGPTSILFGSSLAWLTLGLPL Homology
BLAST of Spg008247 vs. NCBI nr
Match: XP_024041921.1 (uncharacterized protein LOC112099052 [Citrus clementina]) HSP 1 Score: 93.6 bits (231), Expect = 3.9e-15 Identity = 61/193 (31.61%), Postives = 94/193 (48.70%), Query Frame = 0
BLAST of Spg008247 vs. NCBI nr
Match: XP_027182101.1 (uncharacterized protein LOC113780501 [Coffea eugenioides]) HSP 1 Score: 88.2 bits (217), Expect = 1.6e-13 Identity = 54/204 (26.47%), Postives = 96/204 (47.06%), Query Frame = 0
BLAST of Spg008247 vs. NCBI nr
Match: KAF4382082.1 (hypothetical protein F8388_001227 [Cannabis sativa]) HSP 1 Score: 87.8 bits (216), Expect = 2.2e-13 Identity = 57/212 (26.89%), Postives = 97/212 (45.75%), Query Frame = 0
BLAST of Spg008247 vs. NCBI nr
Match: XP_024956542.1 (uncharacterized protein LOC112498908 [Citrus sinensis]) HSP 1 Score: 85.9 bits (211), Expect = 8.2e-13 Identity = 61/224 (27.23%), Postives = 99/224 (44.20%), Query Frame = 0
BLAST of Spg008247 vs. NCBI nr
Match: XP_024038343.1 (uncharacterized protein LOC112097373 [Citrus clementina]) HSP 1 Score: 85.9 bits (211), Expect = 8.2e-13 Identity = 64/213 (30.05%), Postives = 94/213 (44.13%), Query Frame = 0
BLAST of Spg008247 vs. ExPASy TrEMBL
Match: A0A803P4U9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 4.7e-14 Identity = 63/246 (25.61%), Postives = 105/246 (42.68%), Query Frame = 0
BLAST of Spg008247 vs. ExPASy TrEMBL
Match: A0A2N9FI47 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS18368 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 8.0e-14 Identity = 57/198 (28.79%), Postives = 92/198 (46.46%), Query Frame = 0
BLAST of Spg008247 vs. ExPASy TrEMBL
Match: A0A7J6GGV5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_001227 PE=4 SV=1) HSP 1 Score: 87.8 bits (216), Expect = 1.0e-13 Identity = 57/212 (26.89%), Postives = 97/212 (45.75%), Query Frame = 0
BLAST of Spg008247 vs. ExPASy TrEMBL
Match: A0A803P5M6 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 6.8e-13 Identity = 64/236 (27.12%), Postives = 98/236 (41.53%), Query Frame = 0
BLAST of Spg008247 vs. ExPASy TrEMBL
Match: A0A2S3I1D8 (Uncharacterized protein OS=Panicum hallii OX=206008 GN=PAHAL_6G095500 PE=4 SV=1) HSP 1 Score: 84.7 bits (208), Expect = 8.8e-13 Identity = 59/211 (27.96%), Postives = 91/211 (43.13%), Query Frame = 0
BLAST of Spg008247 vs. TAIR 10
Match: AT4G29090.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 60.1 bits (144), Expect = 4.5e-09 Identity = 53/216 (24.54%), Postives = 79/216 (36.57%), Query Frame = 0
BLAST of Spg008247 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 48.9 bits (115), Expect = 1.0e-05 Identity = 34/116 (29.31%), Postives = 49/116 (42.24%), Query Frame = 0
BLAST of Spg008247 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein ) HSP 1 Score: 46.2 bits (108), Expect = 6.7e-05 Identity = 44/208 (21.15%), Postives = 72/208 (34.62%), Query Frame = 0
BLAST of Spg008247 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein ) HSP 1 Score: 44.7 bits (104), Expect = 1.9e-04 Identity = 17/44 (38.64%), Postives = 26/44 (59.09%), Query Frame = 0
The following BLAST results are available for this feature:
Pages
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
Relationships
The following mRNA feature(s) are a part of this gene:
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