Spg008212 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg008212
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Retrotransposon gag protein
Location	scaffold2: 18550759 .. 18554675 (-)
RNA-Seq Expression	Spg008212
Synteny	Spg008212

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAGGCCAAGACCGATAAAGCCCAAGCCCAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCCATTTCAACGGTTCAAAAATTTTAGACAGTTCAGAAATTCTACACTCTCACAAAGACAAGAATTCAGAGTTTCAAAGCTCTCAGGCAGAACCAGAGAATTCAGAGAGACTCCACCAAGTCTGAAGACCGAAGACTCTCTGCAATCCATAAATTCAAGTGTTGAACACTTCTTGAAGACCAAACACTCTTCAAGACTTCAACACTCCTTGAAGATCAAAGACTCTTTAGGACATCAACACTTCTTGAAGACTGAAGACTCTTTCAAGACTGGAAGACTTCAAGCTCCAAGAATCCATTGAAGCTTCAGACTCGAGATCAAGCGTTCCAGCCCTCGAGTGAAACACATTCACACACAAGAGAGAGAATCAGAGGATTAAAATTAGAGATTGTACACCCACACGCATATTACATAAATACAAATATATTGTTTATTCCACGTGTCTCCATCTCCGAAGTTACGTGCGAACAAATTGGCACGCCCAGTGGGACCGTCTCTACCTCTCATCTCTCTATCTTATCTCAAGACACAAGTGTAAACATGTCATTCAAGACTTCTTCAATGACTGTTGCCATAAACGACTTTTACACGAGTTATACTACCCATTGTTGCTTCAATGAACTGAGGTTGCAAGAAGATAAAACTCCTATCATTGCAGACAAACAAACGACATTGCAGGGGGCATATACCAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGACTGAGATCCAGGAACACATCAACACGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCTGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAACGGAAAGACTACAGTGCAAGATGATCAGCCACAGTGTTCTGTTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTTTCTCTTGTATTTCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAAGGGACCTACTAGTCAAGCAGTTTGTTCGAACACTTAAAGGAAATGCTTTTGACTGGTACACTGATCTAGAACCTGAATCAATAGACAGTTGGGAGGAACTCGAAAGAAAGTTTTTGAATCGCTTCTACAGCACTAGACGAACCGTTAGCATGTTCGAGCTCACCAACACTAAACAACGAAAGAGTGAGCTTGTTGTTAACTATATAAACCGTTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTCACTGAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCATTGGGAACTCCTCTACATCCTTAAAGGTATAAAGCCTCGCACCTTTGAAGAACTAGCAACTCGCGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACATGAGGAAAGAAGGAAGGAACGACGAAGAGACTGTAGAAGAATCAATGGTTGTAAACACAACCCTTCCCAAGTCGTCTTCAAAAGAAAAGCGACAAACAAATGGAACGTATCACTTAACTTTAAACGAAAGACAGAATAAAATCTATCCTTTCCCTGATGCCGACATCCCTGATATGTTGGAACAACTACTGGAAGCACAACTGATAGAGCTTCCTAAGTGTAAACAACCAGAAGAGATGGAGAAAGTCGATGATCCCAAGTACTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAAGCTAGCTAAGGAAGGAAAAATTGAGCTCGACCTTGATGAAGTAGCTCAATCGAATCATGCTACAGTCAAAGGAAAGGACAAACATAAAAAAAAGAAGAGTCTCAAGAAGCTTCAATCTAAGAGGCAGAGAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGATTGCAAAGGAACTCTTCTCCAGAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTATTCGATCGCATCAAGCCTCCAACTACTCGTCATTCGGTATTCCAGAGAATGAGTATGGCTGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAATAGCCAATTTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTTTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTGAAGCCAAATCTCATTATCCTGACCAATCCTACAAGTCAAGGATCTGATCAAAACCATGATGAAGATAAGAGCTTTTAAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCATACGAGCTTAAAAGGTGAGTGCAAAAAATCTTGAACTACGTTATGACTTGATCCCTATTCCATAAGGGTACGTAGGCAGCTTAAAGAAAACTTTAAGTTCAGTCTCTATAAACAAAAAAAAAAAAGGTACAACAAATATTGAAGCATGACAATACAAATTGAAGAAATTCTTTAGTACTGGGGGCAACACAACAAATTGAAGTTGTACGCCGTCATAAATGTGAAGCTACGGGTTTGATGAATGAAAGAAGACGTCATTCCTCCAAGTTCAATGTCTCGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTAAGTTCGTTGTTCCCGCTTCTTCAAGTTCGAAGGTTCTCAAGCGCTTCGTTGCAGTTCTTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCATTGCAGTTCATTATTTCAAGTTTGAAGGTTCTCACGCATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTGACGCACTTCGTCGCAGTTCCTTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGCTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTGTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCCAAGTTTGAAGGTTCACACGTTGCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACACTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGATGTAA

mRNA sequence

ATGGTTGAGGCCAAGACCGATAAAGCCCAAGCCCAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCCATTTCAACGGTTCAAAAATTTTAGACAGTTCAGAAATTCTACACTCTCACAAAGACAAGAATTCAGAGTTTCAAAGCTCTCAGGCAGAACCAGAGAATTCAGAGAGACTCCACCAAAGAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGATTGCAAAGGAACTCTTCTCCAGAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTATTCGATCGCATCAAGCCTCCAACTACTCGTCATTCGGTATTCCAGAGAATGAGTATGGCTGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAATAGCCAATTTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTTTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCGAAGGTTCTCAAGCGCTTCGTTGCAGTTCTTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCATTGCAGTTCATTATTTCAAGTTTGAAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGCTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTGTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCCAAGTTTGAAGGTTCACACGTTGCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACACTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGATGTAA

Coding sequence (CDS)

ATGGTTGAGGCCAAGACCGATAAAGCCCAAGCCCAAGTTGTTAGGCCCGAAAGTCACCAGGGCCCATCCAGCGAGAACTCTATAAATAGAGGGGTTCTCCTCCATTTCAACGGTTCAAAAATTTTAGACAGTTCAGAAATTCTACACTCTCACAAAGACAAGAATTCAGAGTTTCAAAGCTCTCAGGCAGAACCAGAGAATTCAGAGAGACTCCACCAAAGAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGATTGCAAAGGAACTCTTCTCCAGAACTTTCCACAAAAAGGAAGAAGGAAACTTTGTGACTTCCTACTGCATCGACGTAGAAGAAGTTGACAATTCTGAGAAGGGTGAACAAAGGACCTCCGTATTCGATCGCATCAAGCCTCCAACTACTCGTCATTCGGTATTCCAGAGAATGAGTATGGCTGCGACAGAAGAAGAACATCAATGTTCGGTGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAGGTGTCTCCACATCGAAGAATAGCCAATTTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGGACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAACGACGAGAAGCTTCATAGTAGTATCCCGTCACGTATGAAGAGGAAGTTTTTTGTTCTCATAAATACGGAAGGTTCCTTGAAGTTCGAAGGTTCTCAAGCGCTTCGTTGCAGTTCTTTCTTTTCAATTTCGAAGGTTCTCACGCGTTTCATTGCAGTTCATTATTTCAAGTTTGAAGTTCCCTCTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCTCCCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGTACGCTGCTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTTGTGCGTTGCTGCATTGTTCCCTCTTCTCTCAAGTTCAAAGTTTCTCACGCGCTGCGTTGCAGTTCCTTCTCCCAAAGTTCGAAGGCTCACGCACTTCGCTGCAGTTCATTCTCTCAAGTTTGAAGGTTCTCACGCTGCTTCGCTGCAGTTCCTTCTCTCCAAGTTCGAAGATTCTCATGCGCTTCGTTGCAGTCCCTTCTGTTCAAGTTCGAAGGTTCACACGTTGCGCTGCTTCTTCGCCAAGTTTGAAGGTTCACACGTTGCGCTGTTCCTTCTCCAAGTTCGAAGGTTCTCACGCTACACTGCTTCCTTCTCCACGTTCGAAAGTTCTCGTGCTACGCTGCTTTGCTTATCTTTCTCCAAATTCGAAGGTTCTGCTTTGATGTAA

Protein sequence

MVEAKTDKAQAQVVRPESHQGPSSENSINRGVLLHFNGSKILDSSEILHSHKDKNSEFQSSQAEPENSERLHQRSKEFSQPRQPVIAKELFSRTFHKKEEGNFVTSYCIDVEEVDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSLKFEGSQALRCSSFFSISKVLTRFIAVHYFKFEVPSPQVRRFSRASLQFLLPKFEGPYTVRYCVVPSPSSKVLRCTLLRCSFSKFEGSQLYDCYVVPPPSAKDLMLCVAALFPLLSSSKFLTRCVAVPSPKVRRLTHFAAVHSLKFEGSHAASLQFLLSKFEDSHALRCSPFCSSSKVHTLRCFFAKFEGSHVALFLLQVRRFSRYTASFSTFESSRATLLCLSFSKFEGSALM

Homology

[Close]

BLAST of Spg008212 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 4.3e-35
Identity = 94/176 (53.41%), Postives = 118/176 (67.05%), Query Frame = 0


Query: 74  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKG 133
           + ++  QPRQ +   E F R+F   H +E     T +   +          EEVDNS + 
Sbjct: 69  KDEDCLQPRQSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEI 128

Query: 134 EQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKNSQFST 193
           +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  R SAF+RL +STSK  + ST
Sbjct: 129 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 188

Query: 194 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL 237
           S FDRLK+TNDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK  V INTEGSL
Sbjct: 189 SAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

[Close]

BLAST of Spg008212 vs. NCBI nr
Match: TYK00108.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 4.3e-35
Identity = 95/183 (51.91%), Postives = 121/183 (66.12%), Query Frame = 0


Query: 68  SERLHQRSKEFSQPRQPVIAKELFSRTF--------------HKKEEGNFVTSYCIDVEE 127
           S+ +  + ++F QPRQ +   E F R+F              H      F  +Y    EE
Sbjct: 63  SKPIKGKDEDFLQPRQSITLAEFFPRSFLEDHLEEILEVTACHTTSFVEFDKNY-DSYEE 122

Query: 128 VDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTS 187
           VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST TR SAF+RL +STS
Sbjct: 123 VDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTCTRTSAFKRLSISTS 182

Query: 188 KNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTE 237
           K  + STS FDR+K+ NDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK FV INTE
Sbjct: 183 KKDRPSTSAFDRVKMINDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLFVDINTE 242

[Close]

BLAST of Spg008212 vs. NCBI nr
Match: KAA0040811.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 158.3 bits (399), Expect = 1.6e-34
Identity = 93/182 (51.10%), Postives = 120/182 (65.93%), Query Frame = 0


Query: 68  SERLHQRSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEV 127
           S+ +  + ++F QPRQ +   E F R+F   H KE       +   +          EEV
Sbjct: 406 SKPIKGKDEDFLQPRQSITLAEFFPRSFLEDHPKEILEVTACHTTSIVEFDNNYDSYEEV 465

Query: 128 DNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSK 187
           DNS + +QRTSVFDRIKP TTR SVFQR+S+   EEE+QC  ST TR SAF+ L +STSK
Sbjct: 466 DNSNEIKQRTSVFDRIKPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSISTSK 525

Query: 188 NSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEG 237
             + STS FDRLK+ NDQ +R+M +L++K F E N+D+K+HS +PSRMKRK  V INTEG
Sbjct: 526 KDRPSTSAFDRLKMINDQQQREMKSLKVKPFHEENDDDKIHSRVPSRMKRKLSVDINTEG 585

[Close]

BLAST of Spg008212 vs. NCBI nr
Match: TYK08944.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 2.8e-34
Identity = 91/176 (51.70%), Postives = 118/176 (67.05%), Query Frame = 0


Query: 74  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKG 133
           + ++F QPR+ +   E  SR+F   H +E       +   +          EEVDNS + 
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 134 EQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKNSQFST 193
           +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSK  + ST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 194 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL 237
           S FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK  V INTEGSL
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg008212 vs. NCBI nr
Match: KAA0055462.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 157.5 bits (397), Expect = 2.8e-34
Identity = 91/176 (51.70%), Postives = 118/176 (67.05%), Query Frame = 0


Query: 74  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKG 133
           + ++F QPR+ +   E  SR+F   H +E       +   +          EEVDNS + 
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 134 EQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKNSQFST 193
           +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSK  + ST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 194 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL 237
           S FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK  V INTEGSL
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg008212 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-35
Identity = 94/176 (53.41%), Postives = 118/176 (67.05%), Query Frame = 0


Query: 74  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKG 133
           + ++  QPRQ +   E F R+F   H +E     T +   +          EEVDNS + 
Sbjct: 69  KDEDCLQPRQSITLAEFFPRSFLEDHPEEILEVTTCHTTSIVKVDNNYDSYEEVDNSNEI 128

Query: 134 EQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKNSQFST 193
           +QRTSVFDRIKP TTR SVFQR+SMA  EEE+QC  ST  R SAF+RL +STSK  + ST
Sbjct: 129 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPST 188

Query: 194 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL 237
           S FDRLK+TNDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK  V INTEGSL
Sbjct: 189 SAFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSL 244

[Close]

BLAST of Spg008212 vs. ExPASy TrEMBL
Match: A0A5D3BLW3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00640 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.1e-35
Identity = 95/183 (51.91%), Postives = 121/183 (66.12%), Query Frame = 0


Query: 68  SERLHQRSKEFSQPRQPVIAKELFSRTF--------------HKKEEGNFVTSYCIDVEE 127
           S+ +  + ++F QPRQ +   E F R+F              H      F  +Y    EE
Sbjct: 63  SKPIKGKDEDFLQPRQSITLAEFFPRSFLEDHLEEILEVTACHTTSFVEFDKNY-DSYEE 122

Query: 128 VDNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTS 187
           VDNS + +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST TR SAF+RL +STS
Sbjct: 123 VDNSNEIKQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTCTRTSAFKRLSISTS 182

Query: 188 KNSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTE 237
           K  + STS FDR+K+ NDQ +R+M +L+ K F E N+D+K+HS +PSRMKRK FV INTE
Sbjct: 183 KKDRPSTSAFDRVKMINDQQQREMKSLKAKPFHEENDDDKIHSRVPSRMKRKLFVDINTE 242

[Close]

BLAST of Spg008212 vs. ExPASy TrEMBL
Match: A0A5A7TGM1 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold333G00260 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 7.8e-35
Identity = 93/182 (51.10%), Postives = 120/182 (65.93%), Query Frame = 0


Query: 68  SERLHQRSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEV 127
           S+ +  + ++F QPRQ +   E F R+F   H KE       +   +          EEV
Sbjct: 406 SKPIKGKDEDFLQPRQSITLAEFFPRSFLEDHPKEILEVTACHTTSIVEFDNNYDSYEEV 465

Query: 128 DNSEKGEQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSK 187
           DNS + +QRTSVFDRIKP TTR SVFQR+S+   EEE+QC  ST TR SAF+ L +STSK
Sbjct: 466 DNSNEIKQRTSVFDRIKPLTTRSSVFQRLSITTKEEENQCPTSTCTRTSAFKSLSISTSK 525

Query: 188 NSQFSTSVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEG 237
             + STS FDRLK+ NDQ +R+M +L++K F E N+D+K+HS +PSRMKRK  V INTEG
Sbjct: 526 KDRPSTSAFDRLKMINDQQQREMKSLKVKPFHEENDDDKIHSRVPSRMKRKLSVDINTEG 585

[Close]

BLAST of Spg008212 vs. ExPASy TrEMBL
Match: A0A5A7UI09 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold221G00340 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-34
Identity = 91/176 (51.70%), Postives = 118/176 (67.05%), Query Frame = 0


Query: 74  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKG 133
           + ++F QPR+ +   E  SR+F   H +E       +   +          EEVDNS + 
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 134 EQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKNSQFST 193
           +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSK  + ST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 194 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL 237
           S FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK  V INTEGSL
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

[Close]

BLAST of Spg008212 vs. ExPASy TrEMBL
Match: A0A5D3CCI8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00350 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 1.3e-34
Identity = 91/176 (51.70%), Postives = 118/176 (67.05%), Query Frame = 0


Query: 74  RSKEFSQPRQPVIAKELFSRTF---HKKEEGNFVTSYCIDV----------EEVDNSEKG 133
           + ++F QPR+ +   E  SR+F   H +E       +   +          EEVDNS + 
Sbjct: 486 KEEDFLQPRRSITLAEFLSRSFLEDHSEEVLEVTACHTTSIVEVDNNYDSYEEVDNSNEI 545

Query: 134 EQRTSVFDRIKPPTTRHSVFQRMSMAATEEEHQCSVSTSTRPSAFQRLGVSTSKNSQFST 193
           +QRTSVFDRIKP TTR SVFQR+SMA  EE++QC  ST  R SAF+RL +STSK  + ST
Sbjct: 546 KQRTSVFDRIKPLTTRSSVFQRLSMATKEEKNQCPTSTYARTSAFKRLSISTSKKHRPST 605

Query: 194 SVFDRLKVTNDQPKRKMDNLELKLFDEVNNDEKLHSSIPSRMKRKFFVLINTEGSL 237
           S FDRLK+TNDQ +R+M +L+ K F E N+D+K+H+ +PSRMKRK  V INTEGSL
Sbjct: 606 STFDRLKMTNDQQQREMKSLKAKPFHEENDDDKIHNRVPSRMKRKLSVDINTEGSL 661

The following BLAST results are available for this feature:

BLAST of Spg008212 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044978.1	4.3e-35	53.41	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK00108.1	4.3e-35	51.91	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0040811.1	1.6e-34	51.10	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
TYK08944.1	2.8e-34	51.70	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]
KAA0055462.1	2.8e-34	51.70	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg008212 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg008212 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQ06	2.1e-35	53.41	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3BLW3	2.1e-35	51.91	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7TGM1	7.8e-35	51.10	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5A7UI09	1.3e-34	51.70	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]
A0A5D3CCI8	1.3e-34	51.70	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of Spg008212 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 53..83

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg008212.1	Spg008212.1	mRNA