Spg007829 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg007829
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold4: 8607657 .. 8610556 (-)
RNA-Seq ExpressionSpg007829
SyntenySpg007829
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTTGTTCCCCATGGTCGTAGACTTAGAGTTCGAGTAGGTGGAGCGGAAGTTCAAGGTGATGAAGCTAACGCCCAACAGGGAGAAGACCCTCATGTCCCTCCTGTTATTCCTCAAATGGTCCTCACACCAGAGACTGTACAAGCCTTGCTTGATAATATGAATCAGAGGAACGAAAGGCAACCACGAAATCCACATTTGGGTCCTGCTGTATCAGATGACTCCCAACTCATAAGAGATTTTAAGCGCTATGGACCTCCAACTTTTAATGGTCGTTCAAAGGAAGCCACTGCGGCAGAGCAATGGGTCGTAGACCTTGAAGCCATGTTCGACTACCTGGATTGTGAAGATCGTTTGAAGGTGAGAGGAGCAATCTTCTGTTGGGTTTTATGCCCTAAAACTCGTAGATAGTGAATGTAACCGTTGACCGGATATTAATGACATAATATTGATATATTTTTTCATTAATTGTTATTAGTTATTTTATATTTGTCTTTGCCTAATAATAACCCTAATCCAATAAACTAGACATCCAAGGCTGTAATATGAGTCTTGAACTATATGTAGCGACATATGGGATCATTGTTCAAGAAACAGCCTAAAGGGTCTATAGTATAGGGATAAGACTGGGTGCCTTATCCTGGTGACACTATGGATACGGCCCACTTTGTATTTGATACAAACGCTGCGATCCAACGCGTTCGTGTAGGAGACATGCGAGTGGGGGTATCCTATGCAATGAGTTTGCATAAGAACGGACCGCGAAATAGTAACCACTGGTTATAACACCGTTAACTAGTTGGTTTTCTATTTCACTAGGACGACCTAGACAACTTAGTCTTAATCCTGAGTTGATTATGGACTCCTGCTCATGAGAGATTGTCCTTTGATTTGTATGGGTGAGAGTGGCCAATACGCCGACTCAATAAGCCTACCACTTTGGGACAAGACCGAATGGGGAGCTGGGAACATAATCGTACAAGATGGAATTCACTCCTTCCCGACTTTAGGGAAGCAGATGAGTGTTCCCTTAAGTGGTTACTCCGAGTCTTGAACAAAGGGCCCTACCCTCTCAATGGCACGAGAGGGTTTTTTGTTTGATGGTTGGACCACAAACAGGTTGTTCATTAGAGGAGAATTGGTACTTAAGGAAATAGAGGTAACCCAGGGGTAAAACGGTAATTTGACCCAGCTGGTGTTACAGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTAGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTGAGTCTATAGTGGAATGAACACACAGTTAACGAATATTGATTAATGTGGTTAATGAGTTTGACCAATTAATCTCACATCGTTGGAGCTTCTGATCTGCAGGTCCATTAGGTCCCACTGGTAGCTCATAAAGTAATTTGAGGCAACTAAGTAATAAATGTAAATTGAAAATGTTCAATTTACTAAGGGAAACAAATATAATATATATTGATATATTATTATGAGAGAAATTAATATTTGAAGAAATTCAAATATAAATTTATGGAAGTTTGAAAGAGTTCAAATAATGAATTAATTAATTTAAGGCCTAAAATGTGTTTGGGCAAATTAATTAATTCTAGGCCGGAAATTAAATATGTGATATTTAATTGGTGGGAATTAATCAATTATGGAAATAATTAATCACTTAAGGAAGTGATTAATCATTTATGGAAATGATCTAATCACTTATGGAAGTAATTAGTCATTTGTGGAAAAGATTAATCAATTATGGAATTGATTGATCATGATTGATTAATTAAGGAATAAGATTGAATCAATTTTGGAAAAGATTGATTTAATTGAATATTTTATTCATGGCCTCTCTTCTATAAATAGAACACTAAACCTAATTGGTCTAGGACACTTGACACTTTGCTCTTGCTCTTAGACTCTCAAGACAAGACCTAGAATTCTCTCTAGCCTCCCTCTTAGAGAAAGACTCCCACAAGTCTTTTGCCTCCTAGACCTAGAGTCATACCGGTGTAACCTCTGTGGTTATTGTGTCATTCAAGAAGAATTTTCCAGCGATCATAAGACAAAGGAGGCTGTTGCGTTTTGTTCGTTGGAGCATCGTTGGCGACGAACGGTCAAGTCTACAACGGAGGTTTGTAACGGTTCTTCCCCTTTTCTTTAGAAAAGCATGAAAATAAATTTAGATTTATTTTTAAGCATGTTTAAGCTGATTTTCCAGCAACTTTAAAGAGTGTTTAAAGTTTGTTTGAGTTTTCGTAACGGTATTTTAATGTTAATTAATATACGACGTAAGGTCCAATCGATGCGCTTCCGCTGCGTGGGGACTTTTATTCCCTTCAATCGGCATCAGAGCCATCGCTGTCCCTATTAATTAATATTAAAAGTTGCGATAGGCTCTAATAGGTGGGATTTATGCATAATGTATGTTCGGTTTGCGTTGAACTGTTTAGGTTAATTTTATGGCCATAGATTTTATTTTTATGTGATTTTGATCATGTAAGGCCCGGTGTTTCGGGTATTTTATGTAAAATCGAGTCCTATGTAAGTCCGGGTCTAGAATAGGTTTTTATGAGATGAAAATCGAAGCAATCGCCGCTGAAATCGAGGCCAAAACCGAAGAAAACACTGCTGTTTTGCCCAGATTCTGCCTCCAGACGCAACAGCGTCAGGACGTTACCTCAACAGCGTCTCGACGCTGTCTCAATACCGCAGGCGCCAGATATGGAAAGCGCACAGCGTCGAGACGCTGTCACGATGGCGGCGCGCATTAGGGCTTCAACAGGCGCGGTTCAAGCTGTGGGCGGTCCGGTTCGGACCGGTTCGGCTGGGCTGGGACCTATTTGGTTCGGTTCAGCCAATTTTTTGCATGGTTCGTGA

mRNA sequence

ATGCAAGTTGTTCCCCATGGTCGTAGACTTAGAGTTCGAGTAGGTGGAGCGGAAGTTCAAGGTGATGAAGCTAACGCCCAACAGGGAGAAGACCCTCATGTCCCTCCTGTTATTCCTCAAATGGTCCTCACACCAGAGACTGTACAAGCCTTGCTTGATAATATGAATCAGAGGAACGAAAGGCAACCACGAAATCCACATTTGGGTCCTGCTGTATCAGATGACTCCCAACTCATAAGAGATTTTAAGCGCTATGGACCTCCAACTTTTAATGGTCGTTCAAAGGAAGCCACTGCGGCAGAGCAATGGGTCGTAGACCTTGAAGCCATGTTCGACTACCTGGATTGTGAAGATCGTTTGAAGGTGAGAGGAGCAATCTTCTGTTGGGTTTTATGCCCTAAAACTCCTGGTGTTACAGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTAGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGCGATCATAAGACAAAGGAGGCTGTTGCGTTTTGTTCGTTGGAGCATCGTTGGCGACGAACGGTCAAGTCTACAACGGAGCAATCGCCGCTGAAATCGAGGCCAAAACCGAAGAAAACACTGCTGTTTTGCCCAGATTCTGCCTCCAGACGCAACAGCGTCAGGACGTTACCTCAACAGCGTCTCGACGCTGTCTCAATACCGCAGGCGCCAGATATGGAAAGCGCACAGCGTCGAGACGCTGTCACGATGGCGGCGCGCATTAGGGCTTCAACAGGCGCGGTTCAAGCTGTGGGCGGTCCGGTTCGGACCGGTTCGGCTGGGCTGGGACCTATTTGGTTCGGTTCAGCCAATTTTTTGCATGGTTCGTGA

Coding sequence (CDS)

ATGCAAGTTGTTCCCCATGGTCGTAGACTTAGAGTTCGAGTAGGTGGAGCGGAAGTTCAAGGTGATGAAGCTAACGCCCAACAGGGAGAAGACCCTCATGTCCCTCCTGTTATTCCTCAAATGGTCCTCACACCAGAGACTGTACAAGCCTTGCTTGATAATATGAATCAGAGGAACGAAAGGCAACCACGAAATCCACATTTGGGTCCTGCTGTATCAGATGACTCCCAACTCATAAGAGATTTTAAGCGCTATGGACCTCCAACTTTTAATGGTCGTTCAAAGGAAGCCACTGCGGCAGAGCAATGGGTCGTAGACCTTGAAGCCATGTTCGACTACCTGGATTGTGAAGATCGTTTGAAGGTGAGAGGAGCAATCTTCTGTTGGGTTTTATGCCCTAAAACTCCTGGTGTTACAGACACTCGTGAAGGACTAACTAGTCGATATTGGTCTATATCCGTAGACACAGAAAATATGTCTGCAGTGAGAAGAGTGCAACTGTCCATTAGGTCCCACTGCGATCATAAGACAAAGGAGGCTGTTGCGTTTTGTTCGTTGGAGCATCGTTGGCGACGAACGGTCAAGTCTACAACGGAGCAATCGCCGCTGAAATCGAGGCCAAAACCGAAGAAAACACTGCTGTTTTGCCCAGATTCTGCCTCCAGACGCAACAGCGTCAGGACGTTACCTCAACAGCGTCTCGACGCTGTCTCAATACCGCAGGCGCCAGATATGGAAAGCGCACAGCGTCGAGACGCTGTCACGATGGCGGCGCGCATTAGGGCTTCAACAGGCGCGGTTCAAGCTGTGGGCGGTCCGGTTCGGACCGGTTCGGCTGGGCTGGGACCTATTTGGTTCGGTTCAGCCAATTTTTTGCATGGTTCGTGA

Protein sequence

MQVVPHGRRLRVRVGGAEVQGDEANAQQGEDPHVPPVIPQMVLTPETVQALLDNMNQRNERQPRNPHLGPAVSDDSQLIRDFKRYGPPTFNGRSKEATAAEQWVVDLEAMFDYLDCEDRLKVRGAIFCWVLCPKTPGVTDTREGLTSRYWSISVDTENMSAVRRVQLSIRSHCDHKTKEAVAFCSLEHRWRRTVKSTTEQSPLKSRPKPKKTLLFCPDSASRRNSVRTLPQQRLDAVSIPQAPDMESAQRRDAVTMAARIRASTGAVQAVGGPVRTGSAGLGPIWFGSANFLHGS
Homology
[Close]
BLAST of Spg007829 vs. NCBI nr
Match: XP_022155925.1 (uncharacterized protein LOC111022925 [Momordica charantia])

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-18
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 0 

Query: 31  DPHVPPVIP-QMVLTPETVQALLDNMNQRNERQPRNPHLGPAVSDDSQLIRDFKRYGPPT 90
           D +VPPV+P ++VL  E +Q LLDN N     Q + P  G    ++ Q IRDFKR+GPP 
Sbjct: 24  DLNVPPVVPGRVVLLAEALQVLLDNANGAGGAQVQQPSRGQISQEEVQFIRDFKRFGPPV 83

Query: 91  FNGRSKEATAAEQWVVDLEAMFDYLDCEDRLKVRGAIF 128
           FNG S+  TAAE+WV +LEA++ YL C D  KVRGA+F
Sbjct: 84  FNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGAVF 121

[Close]
BLAST of Spg007829 vs. NCBI nr
Match: XP_022157413.1 (uncharacterized protein LOC111024114 [Momordica charantia])

HSP 1 Score: 101.3 bits (251), Expect = 1.5e-17
Identity = 48/94 (51.06%), Postives = 59/94 (62.77%), Query Frame = 0 

Query: 34  VPPVIPQMVLTPETVQALLDNMNQRNERQPRNPHLGPAVSDDSQLIRDFKRYGPPTFNGR 93
           VP V PQ+ L  E +Q LLDN N     Q + P       D+ Q IRDFKR+GPP FNG 
Sbjct: 47  VPQVNPQVALLAEALQVLLDNANGAGGAQVQQPRRAQIPQDEVQFIRDFKRFGPPVFNGV 106

Query: 94  SKEATAAEQWVVDLEAMFDYLDCEDRLKVRGAIF 128
           S+  TA E+WV +LEA++ YL C D  KVRGA+F
Sbjct: 107 SERPTATEEWVRELEALYVYLGCSDDFKVRGAVF 140

[Close]
BLAST of Spg007829 vs. NCBI nr
Match: XP_022149380.1 (uncharacterized protein LOC111017810 [Momordica charantia])

HSP 1 Score: 100.9 bits (250), Expect = 1.9e-17
Identity = 54/113 (47.79%), Postives = 68/113 (60.18%), Query Frame = 0 

Query: 15  GGAEVQGDEANAQQGEDPHVPPVIPQMVLTPETVQALLDNMNQRNERQPRNPHLGPAVSD 74
           GG    G +A A QG    VP V PQ+ L  E +Q LLDN N     Q + P       +
Sbjct: 33  GGVAPPGPQA-APQG----VPEVNPQVALLAEALQVLLDNANGAGGAQVQQPRRAQIPEE 92

Query: 75  DSQLIRDFKRYGPPTFNGRSKEATAAEQWVVDLEAMFDYLDCEDRLKVRGAIF 128
           + Q IRDFKR+GPP FNG S+  TAAE+WV +LEA++ YL C +  KVRGA+F
Sbjct: 93  EVQFIRDFKRFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSNDFKVRGAVF 140

[Close]
BLAST of Spg007829 vs. NCBI nr
Match: XP_022158645.1 (uncharacterized protein LOC111025102 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-17
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 39  PQMVLTPETVQALLDNMNQRNERQPRNPHLGPAVSDDSQLIRDFKRYGPPTFNGRSKEAT 98
           PQ+ L  E +Q LLDN N+    Q + P       ++ Q IRDFKR+GPP FNG S+  T
Sbjct: 3   PQVALLAEALQVLLDNANEAGGAQVQQPRRAQIQQEEVQFIRDFKRFGPPVFNGVSERPT 62

Query: 99  AAEQWVVDLEAMFDYLDCEDRLKVRGAIF 128
           AAE+WV +LEA++ YL C D  KVRGA+F
Sbjct: 63  AAEEWVRELEALYVYLGCSDEFKVRGAVF 91

[Close]
BLAST of Spg007829 vs. NCBI nr
Match: XP_022155341.1 (uncharacterized protein LOC111022474 [Momordica charantia])

HSP 1 Score: 99.8 bits (247), Expect = 4.3e-17
Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = 0 

Query: 34  VPPVIPQMVLTPETVQALLDNMNQRNERQPRNPHLGPAVSDDSQLIRDFKRYGPPTFNGR 93
           VP V PQ+ L  E +Q LLDN N     Q + P       ++ Q IRDFKR+GPP FNG 
Sbjct: 47  VPQVNPQVALLAEALQVLLDNANGAGGAQGQQPRRAQIQQEEVQFIRDFKRFGPPVFNGV 106

Query: 94  SKEATAAEQWVVDLEAMFDYLDCEDRLKVRGAIF 128
           S+  TA E+WV +LEA++ YL C D  KVRGA+F
Sbjct: 107 SERPTATEEWVRELEALYVYLGCSDEFKVRGAMF 140

[Close]
BLAST of Spg007829 vs. ExPASy TrEMBL
Match: A0A6J1DNV8 (uncharacterized protein LOC111022925 OS=Momordica charantia OX=3673 GN=LOC111022925 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 4.9e-19
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 0 

Query: 31  DPHVPPVIP-QMVLTPETVQALLDNMNQRNERQPRNPHLGPAVSDDSQLIRDFKRYGPPT 90
           D +VPPV+P ++VL  E +Q LLDN N     Q + P  G    ++ Q IRDFKR+GPP 
Sbjct: 24  DLNVPPVVPGRVVLLAEALQVLLDNANGAGGAQVQQPSRGQISQEEVQFIRDFKRFGPPV 83

Query: 91  FNGRSKEATAAEQWVVDLEAMFDYLDCEDRLKVRGAIF 128
           FNG S+  TAAE+WV +LEA++ YL C D  KVRGA+F
Sbjct: 84  FNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGAVF 121

[Close]
BLAST of Spg007829 vs. ExPASy TrEMBL
Match: A0A6J1DTA8 (uncharacterized protein LOC111024114 OS=Momordica charantia OX=3673 GN=LOC111024114 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 7.1e-18
Identity = 48/94 (51.06%), Postives = 59/94 (62.77%), Query Frame = 0 

Query: 34  VPPVIPQMVLTPETVQALLDNMNQRNERQPRNPHLGPAVSDDSQLIRDFKRYGPPTFNGR 93
           VP V PQ+ L  E +Q LLDN N     Q + P       D+ Q IRDFKR+GPP FNG 
Sbjct: 47  VPQVNPQVALLAEALQVLLDNANGAGGAQVQQPRRAQIPQDEVQFIRDFKRFGPPVFNGV 106

Query: 94  SKEATAAEQWVVDLEAMFDYLDCEDRLKVRGAIF 128
           S+  TA E+WV +LEA++ YL C D  KVRGA+F
Sbjct: 107 SERPTATEEWVRELEALYVYLGCSDDFKVRGAVF 140

[Close]
BLAST of Spg007829 vs. ExPASy TrEMBL
Match: A0A6J1D5J7 (uncharacterized protein LOC111017810 OS=Momordica charantia OX=3673 GN=LOC111017810 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 9.3e-18
Identity = 54/113 (47.79%), Postives = 68/113 (60.18%), Query Frame = 0 

Query: 15  GGAEVQGDEANAQQGEDPHVPPVIPQMVLTPETVQALLDNMNQRNERQPRNPHLGPAVSD 74
           GG    G +A A QG    VP V PQ+ L  E +Q LLDN N     Q + P       +
Sbjct: 33  GGVAPPGPQA-APQG----VPEVNPQVALLAEALQVLLDNANGAGGAQVQQPRRAQIPEE 92

Query: 75  DSQLIRDFKRYGPPTFNGRSKEATAAEQWVVDLEAMFDYLDCEDRLKVRGAIF 128
           + Q IRDFKR+GPP FNG S+  TAAE+WV +LEA++ YL C +  KVRGA+F
Sbjct: 93  EVQFIRDFKRFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSNDFKVRGAVF 140

[Close]
BLAST of Spg007829 vs. ExPASy TrEMBL
Match: A0A6J1DWE6 (uncharacterized protein LOC111025102 OS=Momordica charantia OX=3673 GN=LOC111025102 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-17
Identity = 45/89 (50.56%), Postives = 58/89 (65.17%), Query Frame = 0 

Query: 39  PQMVLTPETVQALLDNMNQRNERQPRNPHLGPAVSDDSQLIRDFKRYGPPTFNGRSKEAT 98
           PQ+ L  E +Q LLDN N+    Q + P       ++ Q IRDFKR+GPP FNG S+  T
Sbjct: 3   PQVALLAEALQVLLDNANEAGGAQVQQPRRAQIQQEEVQFIRDFKRFGPPVFNGVSERPT 62

Query: 99  AAEQWVVDLEAMFDYLDCEDRLKVRGAIF 128
           AAE+WV +LEA++ YL C D  KVRGA+F
Sbjct: 63  AAEEWVRELEALYVYLGCSDEFKVRGAVF 91

[Close]
BLAST of Spg007829 vs. ExPASy TrEMBL
Match: A0A6J1DRF5 (uncharacterized protein LOC111022474 OS=Momordica charantia OX=3673 GN=LOC111022474 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-17
Identity = 47/94 (50.00%), Postives = 59/94 (62.77%), Query Frame = 0 

Query: 34  VPPVIPQMVLTPETVQALLDNMNQRNERQPRNPHLGPAVSDDSQLIRDFKRYGPPTFNGR 93
           VP V PQ+ L  E +Q LLDN N     Q + P       ++ Q IRDFKR+GPP FNG 
Sbjct: 47  VPQVNPQVALLAEALQVLLDNANGAGGAQGQQPRRAQIQQEEVQFIRDFKRFGPPVFNGV 106

Query: 94  SKEATAAEQWVVDLEAMFDYLDCEDRLKVRGAIF 128
           S+  TA E+WV +LEA++ YL C D  KVRGA+F
Sbjct: 107 SERPTATEEWVRELEALYVYLGCSDEFKVRGAMF 140

The following BLAST results are available for this feature:
BLAST of Spg007829 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022155925.11.0e-1852.04uncharacterized protein LOC111022925 [Momordica charantia][more]
XP_022157413.11.5e-1751.06uncharacterized protein LOC111024114 [Momordica charantia][more]
XP_022149380.11.9e-1747.79uncharacterized protein LOC111017810 [Momordica charantia][more]
XP_022158645.14.3e-1750.56uncharacterized protein LOC111025102 [Momordica charantia][more]
XP_022155341.14.3e-1750.00uncharacterized protein LOC111022474 [Momordica charantia][more]
BLAST of Spg007829 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg007829 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DNV84.9e-1952.04uncharacterized protein LOC111022925 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
A0A6J1DTA87.1e-1851.06uncharacterized protein LOC111024114 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A6J1D5J79.3e-1847.79uncharacterized protein LOC111017810 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1DWE62.1e-1750.56uncharacterized protein LOC111025102 OS=Momordica charantia OX=3673 GN=LOC111025... [more]
A0A6J1DRF52.1e-1750.00uncharacterized protein LOC111022474 OS=Momordica charantia OX=3673 GN=LOC111022... [more]
BLAST of Spg007829 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..34

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg007829.1Spg007829.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding