Spg007599 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg007599
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	28 kDa ribonucleoprotein, chloroplastic-like
Location	scaffold2: 820857 .. 823011 (-)
RNA-Seq Expression	Spg007599
Synteny	Spg007599

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCTCTTCCCCTTATCCTCACCTCACCTCACCTCCTGGGTGTTAGTGTTAGGCCTCTCCTCTAAAACCCTTCTTCTTGAATCTCTTCCTTTTCTTTCTCTGAGATTCAGAAATGGCTTCTACTTCAGCCACTTCAATTTTGAAGCCTTTGTCCAAGGCAGATTCTTGCCTTCTCTCCTTGCCTTCTGTATTCAGCTGCAGAACCCCACACTCTTTTCTCTCTTTCCCTTCCAAATTCATCCCGTTTCATCTTTCTTCTTCTCATTCTTCAGTCTTTTCCGCCTCAAAGAAGAAGACCCATCTTTCATCTCTAATTGCCTCTGTAGCCCAAGAAGACGACACCATCACCATCGACCAGAAGCTCGGCAGCGACGAAGAAGGGGGGCCCCATTGGGAAAATCAAGAGCTCAGTGAGACTGAATCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGAGGATGGAGGAAGTGAGGCCGAAGGGGGGCTTTTGGAGTTGGGAGACGAGGAGGAAGAAGAAGGCTCTTATGTCGAACCAAATGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATGTTGATAGCCAAAAGCTTGCAATGCTCTTTGAGAAGGCTGGAACTGTGGAGATTGCTGAGGTGAGTTTTCAGAATTTGGTGAATCGAACGTAATCTTGTTGAGTCTTTCTTTGGTTTATGGATTTGGTTTAAGCTTTTAATCTTCTTTTGAGGATTGTAGGTTATTTACAACAGAGAAACAGACCAGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGTAAGCTTTTGATGTTCAATTTTTTTTTCAATAAATTTCGAGCATATGTGATTATCTTGAAACCTTATCTTCATTCTTACTTTTTTGTAGAAGCATTTACCACCTAACTTCTCTCTGCATTTAACCTGTTGATTTTATTCTGAAGAGTTCAAATGATCTGTTCTTCATGAATCTGAGGATTTGTGTGGTGTGGTCTACTAGGAGTTAGCTATTGAGACCAACTTCTGACTGGTGAATTTGTTGAATTGTAATAGCACCTTCTGTAATTTTTTGCTGCTTTGAATGTTTGTTGATGAGATTCTTGTCTGTCTCTTTTCATACTGAGGCTGGTTTTGCCCTCTGGATTTGCCATTTATCTGTTCTGAGCTTAAAGCTCGCCTATAGAGCCCATGTTCTTATGTAAACTTGAGTATCTCAACATATTAATTGCTTTTCTCTTTTGGTTGAAATGCCCTTGACTTGTACTTGGTACTTAGTAAATTTTTCCCATTGTACAGAGAGTTTTCAGGGAATTAATTGTATTTTCTGGGTTTATAGGATCTATCAGGGAGGCTGTTGACTGTTAATAAGGCTGCCCCAAGAGGTTCAAGGCCAGAACGTGCACCTCGAACATTTCAATCCGCTTTCAGAATCTATGTGGGTAATCTTCCATGGGATGTAGATAATGCACGCCTGGAGCAGCTCTTCAGCGAACATGGTAAAGTAGTAGAGGCCCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGGTATGAACATTGCTGTTTCTTTAAACAATCATTTTAGAATTAGAATTGCATAAACACTTGGATCAACACAACACAACGCAACACAACACAAATGATGAAACAACTTATTGAGATGGAAACCAAACAGTTATTGAATCTTGTCAACTGCTAACAAAGCATTCTGAAATTTGAATTGTGCAGAGTCTAGATGGAAGAGCAATCAGAGTAAATGTTGCTGAGGAAAAACCAAGGCGCAACTTCTGAACTGAACCAAGCTGAATCCAACGCCCTTTTTATCTTGCTCTGTGTTACCCTTTTTTGTTTTCCAAAAAGTATAGGTGAGTTTTGTAGTGCCATTGTTTAGCCACCTTGTTAAAGTGTAATTTGATGTCTTTTATGCTTTTAACATTTCAAGTCTGTTATTAATTTGGATATGATGTACGAGTTACAAGTTTCGCAAGTGCCATACCCTTTTTATCCTTCAATACTCTCTGCAGATGAAATGGTCTTTTCCCATT

mRNA sequence

ATGGCTTCTACTTCAGCCACTTCAATTTTGAAGCCTTTGTCCAAGGCAGATTCTTGCCTTCTCTCCTTGCCTTCTGTATTCAGCTGCAGAACCCCACACTCTTTTCTCTCTTTCCCTTCCAAATTCATCCCGTTTCATCTTTCTTCTTCTCATTCTTCAGTCTTTTCCGCCTCAAAGAAGAAGACCCATCTTTCATCTCTAATTGCCTCTGTAGCCCAAGAAGACGACACCATCACCATCGACCAGAAGCTCGGCAGCGACGAAGAAGGGGGGCCCCATTGGGAAAATCAAGAGCTCAGTGAGACTGAATCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGAGGATGGAGGAAGTGAGGCCGAAGGGGGGCTTTTGGAGTTGGGAGACGAGGAGGAAGAAGAAGGCTCTTATGTCGAACCAAATGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATGTTGATAGCCAAAAGCTTGCAATGCTCTTTGAGAAGGCTGGAACTGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGACCAGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGATCTATCAGGGAGGCTGTTGACTGTTAATAAGGCTGCCCCAAGAGGTTCAAGGCCAGAACGTGCACCTCGAACATTTCAATCCGCTTTCAGAATCTATGTGGGTAATCTTCCATGGGATGTAGATAATGCACGCCTGGAGCAGCTCTTCAGCGAACATGGTAAAGTAGTAGAGGCCCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGATGGAAGAGCAATCAGAGTAAATGTTGCTGAGGAAAAACCAAGGCGCAACTTCTGA

Coding sequence (CDS)

ATGGCTTCTACTTCAGCCACTTCAATTTTGAAGCCTTTGTCCAAGGCAGATTCTTGCCTTCTCTCCTTGCCTTCTGTATTCAGCTGCAGAACCCCACACTCTTTTCTCTCTTTCCCTTCCAAATTCATCCCGTTTCATCTTTCTTCTTCTCATTCTTCAGTCTTTTCCGCCTCAAAGAAGAAGACCCATCTTTCATCTCTAATTGCCTCTGTAGCCCAAGAAGACGACACCATCACCATCGACCAGAAGCTCGGCAGCGACGAAGAAGGGGGGCCCCATTGGGAAAATCAAGAGCTCAGTGAGACTGAATCTCGTATTTCTGATTGGGAAGGTGAAGGTGAAGAGGATGGAGGAAGTGAGGCCGAAGGGGGGCTTTTGGAGTTGGGAGACGAGGAGGAAGAAGAAGGCTCTTATGTCGAACCAAATGAAGATGCTAAATTGTTTGTTGGGAATTTGCCTTATGATGTTGATAGCCAAAAGCTTGCAATGCTCTTTGAGAAGGCTGGAACTGTGGAGATTGCTGAGGTTATTTACAACAGAGAAACAGACCAGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGATCTATCAGGGAGGCTGTTGACTGTTAATAAGGCTGCCCCAAGAGGTTCAAGGCCAGAACGTGCACCTCGAACATTTCAATCCGCTTTCAGAATCTATGTGGGTAATCTTCCATGGGATGTAGATAATGCACGCCTGGAGCAGCTCTTCAGCGAACATGGTAAAGTAGTAGAGGCCCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTGACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTCTAGATGGAAGAGCAATCAGAGTAAATGTTGCTGAGGAAAAACCAAGGCGCAACTTCTGA

Protein sequence

MASTSATSILKPLSKADSCLLSLPSVFSCRTPHSFLSFPSKFIPFHLSSSHSSVFSASKKKTHLSSLIASVAQEDDTITIDQKLGSDEEGGPHWENQELSETESRISDWEGEGEEDGGSEAEGGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERAPRTFQSAFRIYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEEKPRRNF

Homology

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BLAST of Spg007599 vs. NCBI nr
Match: XP_022134798.1 (28 kDa ribonucleoprotein, chloroplastic-like [Momordica charantia])

HSP 1 Score: 536.2 bits (1380), Expect = 2.0e-148
Identity = 293/339 (86.43%), Postives = 304/339 (89.68%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADSCLLSLPSVFSCRTPHSFLSFPSKFIPFHL-SSSHSSVFSASK 60
           MASTSATSILKPLSKADSCLLSLPSVF+CR PHSFLSFPSK I FHL SSSHSS FS SK
Sbjct: 1   MASTSATSILKPLSKADSCLLSLPSVFTCRPPHSFLSFPSKLIRFHLSSSSHSSPFSLSK 60

Query: 61  KKTHLSSLIASV------AQEDDTITIDQKLGSDE----EGGPHWENQELSETESRISDW 120
           KK H SSL++ V      AQEDDTITID KLG DE    E GPHWENQELSETESRISDW
Sbjct: 61  KKPHPSSLVSFVAQTSDWAQEDDTITIDPKLGGDEEEEDEQGPHWENQELSETESRISDW 120

Query: 121 EGEGEEDGGSEA-----EGGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAML 180
           EGE  EDGGSEA     EGGLLE  +EEEEEGSY EPNEDAKLFVGNLPYDVDSQKLAM+
Sbjct: 121 EGEA-EDGGSEAEGEDGEGGLLE--EEEEEEGSYEEPNEDAKLFVGNLPYDVDSQKLAMI 180

Query: 181 FEKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPR 240
           F KAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRY+L GRLLTVNKAAPR
Sbjct: 181 FGKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELEGRLLTVNKAAPR 240

Query: 241 GSRPERAPRTFQSAFRIYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGF 300
           G+RPER PRTFQS+FRIYVGNLPWDVDNARLEQ+FSEHGKVVEARVLYDRD+GRSRGFGF
Sbjct: 241 GARPERTPRTFQSSFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDTGRSRGFGF 300

Query: 301 VTMADETGMNDAIAALDGQSLDGRAIRVNVAEEKPRRNF 324
           VTMADETGMNDAIAALDGQSLDGRAIRVNVAEE+PRRNF
Sbjct: 301 VTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 336

[Close]

BLAST of Spg007599 vs. NCBI nr
Match: XP_038878997.1 (28 kDa ribonucleoprotein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 533.5 bits (1373), Expect = 1.3e-147
Identity = 285/329 (86.63%), Postives = 300/329 (91.19%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADSCLLSLPSVFSCRTPHSFLSFPSKFIPFHLSSSHSSVFSASKK 60
           MASTSATSILKPLSK DSC LSLPS+F+ R PH+FLSFPSKFIPF+LSSSH+S+FS+SKK
Sbjct: 1   MASTSATSILKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFNLSSSHTSLFSSSKK 60

Query: 61  KTHLSSL--IASVAQEDDTITIDQKLGSDE--EGGPHWENQELSETESRISDWEG--EGE 120
           KTHL S+   +  AQEDDTITID KLG DE  E GPHWENQELSETESRISDWEG  EGE
Sbjct: 61  KTHLPSVAQTSDWAQEDDTITIDPKLGDDEAAEEGPHWENQELSETESRISDWEGEAEGE 120

Query: 121 EDGGSEAEGGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIA 180
           +DGGSEAEG        +EEEG Y EPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIA
Sbjct: 121 DDGGSEAEG--------DEEEGPYEEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIA 180

Query: 181 EVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERAPRT 240
           EVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRY+LSGRLLTVNKAAPRGSRPER PRT
Sbjct: 181 EVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELSGRLLTVNKAAPRGSRPERQPRT 240

Query: 241 FQSAFRIYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMN 300
           FQ AFRIYVGNLPWDVDNARLEQ+FSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMN
Sbjct: 241 FQPAFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMN 300

Query: 301 DAIAALDGQSLDGRAIRVNVAEEKPRRNF 324
           DAIAALDGQSL+GRAIRVNVAEE+PRRNF
Sbjct: 301 DAIAALDGQSLEGRAIRVNVAEERPRRNF 321

[Close]

BLAST of Spg007599 vs. NCBI nr
Match: KAG6587437.1 (hypothetical protein SDJN03_16002, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021420.1 hypothetical protein SDJN02_15145 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 527.3 bits (1357), Expect = 9.1e-146
Identity = 277/323 (85.76%), Postives = 290/323 (89.78%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADSCLLSLPSVFSCRTPHSFLSFPSKFIPFHLSSSHSSVFSASKK 60
           MASTSATSILKPLSKAD CLLSLPSVF+ R P SFLSFPSKFIPFHLSSSHSSVF  SKK
Sbjct: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60

Query: 61  KTHLSSLIASVAQEDDTITIDQKLGSDEEGGPHWENQELSETESRISDWEGEGEEDGGSE 120
           K HLSSLIASVAQEDDTITIDQKL  DE+G                  WEGEGEE GGSE
Sbjct: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEQG------------------WEGEGEEVGGSE 120

Query: 121 AEGGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNR 180
           AEGGLLELG+++EEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEK GTVEIAEV+YNR
Sbjct: 121 AEGGLLELGEDDEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNR 180

Query: 181 ETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERAPRTFQSAFR 240
           +TDQSRGFGFVTMSTVEEAEKAVD  NRYDLSGRLLTVNKAAPRGSRPE  PRTFQSA+R
Sbjct: 181 DTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYR 240

Query: 241 IYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 300
           +YVGNLPWDVDNARLEQ+FSEHGKVV+ARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL
Sbjct: 241 LYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 300

Query: 301 DGQSLDGRAIRVNVAEEKPRRNF 324
           DGQS+DGRAIRVNVAEE+PRRNF
Sbjct: 301 DGQSIDGRAIRVNVAEERPRRNF 305

[Close]

BLAST of Spg007599 vs. NCBI nr
Match: XP_022931735.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata])

HSP 1 Score: 526.9 bits (1356), Expect = 1.2e-145
Identity = 278/323 (86.07%), Postives = 289/323 (89.47%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADSCLLSLPSVFSCRTPHSFLSFPSKFIPFHLSSSHSSVFSASKK 60
           MASTSATSILKPLSKAD CLLSLPSVF+ R P SFLSFPSKFIPFHLSSSHSSVF  SKK
Sbjct: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60

Query: 61  KTHLSSLIASVAQEDDTITIDQKLGSDEEGGPHWENQELSETESRISDWEGEGEEDGGSE 120
           K HLSSLIASVAQEDDTITIDQKL  DEEG                  W GEGEE GGSE
Sbjct: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEG------------------WGGEGEEVGGSE 120

Query: 121 AEGGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNR 180
           AEGGLLELG++EEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEK GTVEIAEV+YNR
Sbjct: 121 AEGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNR 180

Query: 181 ETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERAPRTFQSAFR 240
           +TDQSRGFGFVTMSTVEEAEKAVD  NRYDLSGRLLTVNKAAPRGSRPE  PRTFQSA+R
Sbjct: 181 DTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYR 240

Query: 241 IYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 300
           +YVGNLPWDVDNARLEQ+FSEHGKVV+ARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL
Sbjct: 241 LYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 300

Query: 301 DGQSLDGRAIRVNVAEEKPRRNF 324
           DGQS+DGRAIRVNVAEE+PRRNF
Sbjct: 301 DGQSIDGRAIRVNVAEERPRRNF 305

[Close]

BLAST of Spg007599 vs. NCBI nr
Match: XP_023530762.1 (28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 525.8 bits (1353), Expect = 2.7e-145
Identity = 277/323 (85.76%), Postives = 289/323 (89.47%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADSCLLSLPSVFSCRTPHSFLSFPSKFIPFHLSSSHSSVFSASKK 60
           MASTSATSILKPLSKAD CLLSLPSVF+ R P SFLSFPSKFIPFHLSSSHSSVF  SKK
Sbjct: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60

Query: 61  KTHLSSLIASVAQEDDTITIDQKLGSDEEGGPHWENQELSETESRISDWEGEGEEDGGSE 120
           K HLSSLIASVAQEDDTITIDQKL  DEEG                  WE EGEE GGSE
Sbjct: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEG------------------WEAEGEEVGGSE 120

Query: 121 AEGGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNR 180
           AEGGLLELG++EEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEK GTVEIAEV+YNR
Sbjct: 121 AEGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNR 180

Query: 181 ETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERAPRTFQSAFR 240
           +TDQSRGFGFVTMSTVEEAEKAVD  NRYDLSGRLLTVNKAAPRGSRPE  PRTFQSA+R
Sbjct: 181 DTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYR 240

Query: 241 IYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 300
           +YVGNLPWDVDNARLEQ+FSEHGKVV+ARVL+DRDSGRSRGFGFVTMADETGMNDAIAAL
Sbjct: 241 LYVGNLPWDVDNARLEQVFSEHGKVVDARVLFDRDSGRSRGFGFVTMADETGMNDAIAAL 300

Query: 301 DGQSLDGRAIRVNVAEEKPRRNF 324
           DGQS+DGRAIRVNVAEE+PRRNF
Sbjct: 301 DGQSIDGRAIRVNVAEERPRRNF 305

[Close]

BLAST of Spg007599 vs. ExPASy Swiss-Prot
Match: Q04836 (31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A PE=1 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 1.1e-88
Identity = 200/338 (59.17%), Postives = 240/338 (71.01%), Query Frame = 0


Query: 1   MASTSATSILKPLSKAD---SCLLSLPSVFSCRTPHSFLSFPSKFIP--FHLSSSHSSVF 60
           MAS+  TS LKPL+ AD   S + S PS+ S  +     S     +    +L  S S V 
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVS 60

Query: 61  SASKKKTHL--SSLIASVAQEDDTITIDQKLGSDEEGGPHWENQELSETESRISDWE-GE 120
            + K KTHL  S  ++ VAQ  D           EEGG    +  + ETE+ +   +  E
Sbjct: 61  LSLKTKTHLKKSPFVSFVAQTSDWA---------EEGGE--GSVAVEETENSLESQDVSE 120

Query: 121 GEEDGGSEAEGGLLELGDEEE---------EEGSYVEPNEDAKLFVGNLPYDVDSQKLAM 180
           G+E  G  +EG + E GDE E         E   + EP+E+AKLFVGNL YDV+SQ LAM
Sbjct: 121 GDESEGDASEGDVSE-GDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAM 180

Query: 181 LFEKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAP 240
           LFE+AGTVEIAEVIYNRETDQSRGFGFVTMS+V+EAE AV+ FNRYDL+GRLLTVNKAAP
Sbjct: 181 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP 240

Query: 241 RGSRPERAPRTFQSAFRIYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFG 300
           RGSRPERAPR ++ AFR+YVGNLPWDVDN RLEQLFSEHGKVVEARV+YDR++GRSRGFG
Sbjct: 241 RGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFG 300

Query: 301 FVTMADETGMNDAIAALDGQSLDGRAIRVNVAEEKPRR 322
           FVTM+D   +N+AI+ALDGQ+L+GRAIRVNVAEE+P R
Sbjct: 301 FVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326

[Close]

BLAST of Spg007599 vs. ExPASy Swiss-Prot
Match: P19683 (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 3.1e-88
Identity = 191/329 (58.05%), Postives = 234/329 (71.12%), Query Frame = 0


Query: 3   STSATSILKPLSKA-DSCLLSLPSVFSCRTPHSFLSFP------SKFIPFHLSSSHSSVF 62
           S +   I+KP S A +SCL+SLP +F+  T     ++P            HLS ++S   
Sbjct: 2   SCATKPIIKPSSMATNSCLISLPPLFATTTKSKSFAYPYLSNTLKPIKLLHLSCTYSPCI 61

Query: 63  SASKKKTHLSSLIASVAQEDDTITIDQKLGSDEEGGPHWENQELSETESRISDWEGEGEE 122
            + KKKT +S+L     +E++T+ +D   G  +E G  +  +   E          E EE
Sbjct: 62  LSPKKKTSVSAL----QEEENTLILD---GQGQESGDLFNFEPSGE----------ETEE 121

Query: 123 DGGSEAEGGLLELGDEE--EEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEI 182
           +G  EA G   E  + E  EEE  + EP EDAKLFVGNLPYDVDS+ LA LFE+AG VEI
Sbjct: 122 EGFVEAVGDAGESDEVEADEEEEEFQEPPEDAKLFVGNLPYDVDSEGLARLFEQAGVVEI 181

Query: 183 AEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERAPR 242
           AEVIYNR+TDQSRGFGFVTMSTVEEAEKAV+ +NRYD++GRLLTVNKAA RG RPER PR
Sbjct: 182 AEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPR 241

Query: 243 TFQSAFRIYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGM 302
           TF+ ++RIYVGN+PW +D+ARLEQLFSEHGKVV ARV+YDR++GRSRGFGFVTMA E  M
Sbjct: 242 TFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEM 301

Query: 303 NDAIAALDGQSLDGRAIRVNVAEEKPRRN 323
           +DAIA LDGQSLDGR IRVNVAE++ RRN
Sbjct: 302 SDAIANLDGQSLDGRTIRVNVAEDRSRRN 313

[Close]

BLAST of Spg007599 vs. ExPASy Swiss-Prot
Match: P19682 (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 5.0e-86
Identity = 172/309 (55.66%), Postives = 223/309 (72.17%), Query Frame = 0


Query: 17  DSCLLSLPSVFSCRTPHSFLSFP---SKFIPFHLSSSHSSVFSASKKKTHLSSLIASVAQ 76
           + CL+SLP  F+  T  S  S+P   ++  P  LSSS  ++ S +K+ T   + ++ +++
Sbjct: 4   NGCLISLPPFFT--TTKSISSYPFLSTQLKPISLSSSLPTLLSLNKRTTQFPTFVSVLSE 63

Query: 77  EDDTITIDQKLGSDEEGGPHWENQELSETESRISDWEGEGEEDGGSEAEGGLLELGDEEE 136
           +D+T+ +D                                +++ G +    + E G+ EE
Sbjct: 64  DDNTLVLD--------------------------------DQEQGGDFPSFVGEAGETEE 123

Query: 137 EEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNRETDQSRGFGFVTM 196
               Y EP+EDAKLFVGNLPYD+DS+ LA LF++AG VEIAEVIYNRETD+SRGFGFVTM
Sbjct: 124 ----YQEPSEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTM 183

Query: 197 STVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERAPRTFQSAFRIYVGNLPWDVDNA 256
           STVEEA+KAV+ +++YDL+GRLLTVNKAAPRGSRPERAPRTFQ  +RIYVGN+PWD+D+A
Sbjct: 184 STVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDA 243

Query: 257 RLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVN 316
           RLEQ+FSEHGKVV ARV++DR+SGRSRGFGFVTM+ E  M++AIA LDGQ+LDGR IRVN
Sbjct: 244 RLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVN 274

Query: 317 VAEEKPRRN 323
            AEE+PRRN
Sbjct: 304 AAEERPRRN 274

[Close]

BLAST of Spg007599 vs. ExPASy Swiss-Prot
Match: P28644 (28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 2.9e-78
Identity = 158/232 (68.10%), Postives = 187/232 (80.60%), Query Frame = 0


Query: 104 SRISDWEGEGEE----DGGSEAEGGL-----LELGDEEEEEG--SYVEPNEDAKLFVGNL 163
           ++ S+WE EG      +G S+ EG +      ++ DE   EG   + EP E+AKLFVGNL
Sbjct: 3   AQTSEWEQEGSTNAVLEGESDPEGAVSWGSETQVSDEGGVEGGQGFSEPPEEAKLFVGNL 62

Query: 164 PYDVDSQKLAMLFEKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLS 223
           PYDVDS+KLA +F+ AG VEIAEVIYNRETD+SRGFGFVTMSTVEEAEKAV+  N YD+ 
Sbjct: 63  PYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEAEKAVELLNGYDMD 122

Query: 224 GRLLTVNKAAPRGSRPERAPR-TFQSAFRIYVGNLPWDVDNARLEQLFSEHGKVVEARVL 283
           GR LTVNKAAPRGS PERAPR  F+ + R+YVGNLPWDVD +RLEQLFSEHGKVV ARV+
Sbjct: 123 GRQLTVNKAAPRGS-PERAPRGDFEPSCRVYVGNLPWDVDTSRLEQLFSEHGKVVSARVV 182

Query: 284 YDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEEKPRRNF 324
            DR++GRSRGFGFVTM+ E+ +NDAIAALDGQ+LDGRA+RVNVAEE+PRR F
Sbjct: 183 SDRETGRSRGFGFVTMSSESEVNDAIAALDGQTLDGRAVRVNVAEERPRRAF 233

[Close]

BLAST of Spg007599 vs. ExPASy Swiss-Prot
Match: Q9FGS0 (RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31B PE=1 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 6.5e-78
Identity = 160/270 (59.26%), Postives = 202/270 (74.81%), Query Frame = 0


Query: 53  SVFSASKKKTHLSSLIASVAQEDDTITIDQKLGSDEEGGPHWENQELSETESRISDWEGE 112
           S+F+ S  ++H  +   S++     +T+  K  +     P      +    S+ S+W  E
Sbjct: 28  SIFNISSSESHRFNF--SLSSRPVNLTLSLKSKTLRNSSP------VVTFVSQTSNWAEE 87

Query: 113 GE-EDGGSEAEGGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTV 172
            E EDG        ++   E E+   + EP E+AKLFVGNLPYDVDSQ LAMLFE+AGTV
Sbjct: 88  EEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTV 147

Query: 173 EIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERA 232
           EI+EVIYNR+TDQSRGFGFVTMSTVEEAEKAV+ FN ++++GR LTVN+AAPRGSRPER 
Sbjct: 148 EISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQ 207

Query: 233 PRTFQSAFRIYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADET 292
           PR + +AFRIYVGNLPWDVD+ RLE+LFSEHGKVV+ARV+ DR++GRSRGFGFV M++E 
Sbjct: 208 PRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNEN 267

Query: 293 GMNDAIAALDGQSLDGRAIRVNVAEEKPRR 322
            +N AIAALDGQ+L+GRAI+VNVAEE+ RR
Sbjct: 268 EVNVAIAALDGQNLEGRAIKVNVAEERTRR 289

[Close]

BLAST of Spg007599 vs. ExPASy TrEMBL
Match: A0A6J1C316 (28 kDa ribonucleoprotein, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111006981 PE=4 SV=1)

HSP 1 Score: 536.2 bits (1380), Expect = 9.5e-149
Identity = 293/339 (86.43%), Postives = 304/339 (89.68%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADSCLLSLPSVFSCRTPHSFLSFPSKFIPFHL-SSSHSSVFSASK 60
           MASTSATSILKPLSKADSCLLSLPSVF+CR PHSFLSFPSK I FHL SSSHSS FS SK
Sbjct: 1   MASTSATSILKPLSKADSCLLSLPSVFTCRPPHSFLSFPSKLIRFHLSSSSHSSPFSLSK 60

Query: 61  KKTHLSSLIASV------AQEDDTITIDQKLGSDE----EGGPHWENQELSETESRISDW 120
           KK H SSL++ V      AQEDDTITID KLG DE    E GPHWENQELSETESRISDW
Sbjct: 61  KKPHPSSLVSFVAQTSDWAQEDDTITIDPKLGGDEEEEDEQGPHWENQELSETESRISDW 120

Query: 121 EGEGEEDGGSEA-----EGGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAML 180
           EGE  EDGGSEA     EGGLLE  +EEEEEGSY EPNEDAKLFVGNLPYDVDSQKLAM+
Sbjct: 121 EGEA-EDGGSEAEGEDGEGGLLE--EEEEEEGSYEEPNEDAKLFVGNLPYDVDSQKLAMI 180

Query: 181 FEKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPR 240
           F KAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRY+L GRLLTVNKAAPR
Sbjct: 181 FGKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYELEGRLLTVNKAAPR 240

Query: 241 GSRPERAPRTFQSAFRIYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGF 300
           G+RPER PRTFQS+FRIYVGNLPWDVDNARLEQ+FSEHGKVVEARVLYDRD+GRSRGFGF
Sbjct: 241 GARPERTPRTFQSSFRIYVGNLPWDVDNARLEQVFSEHGKVVEARVLYDRDTGRSRGFGF 300

Query: 301 VTMADETGMNDAIAALDGQSLDGRAIRVNVAEEKPRRNF 324
           VTMADETGMNDAIAALDGQSLDGRAIRVNVAEE+PRRNF
Sbjct: 301 VTMADETGMNDAIAALDGQSLDGRAIRVNVAEERPRRNF 336

[Close]

BLAST of Spg007599 vs. ExPASy TrEMBL
Match: A0A6J1F0A4 (28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437894 PE=4 SV=1)

HSP 1 Score: 526.9 bits (1356), Expect = 5.8e-146
Identity = 278/323 (86.07%), Postives = 289/323 (89.47%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADSCLLSLPSVFSCRTPHSFLSFPSKFIPFHLSSSHSSVFSASKK 60
           MASTSATSILKPLSKAD CLLSLPSVF+ R P SFLSFPSKFIPFHLSSSHSSVF  SKK
Sbjct: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60

Query: 61  KTHLSSLIASVAQEDDTITIDQKLGSDEEGGPHWENQELSETESRISDWEGEGEEDGGSE 120
           K HLSSLIASVAQEDDTITIDQKL  DEEG                  W GEGEE GGSE
Sbjct: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEG------------------WGGEGEEVGGSE 120

Query: 121 AEGGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNR 180
           AEGGLLELG++EEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEK GTVEIAEV+YNR
Sbjct: 121 AEGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNR 180

Query: 181 ETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERAPRTFQSAFR 240
           +TDQSRGFGFVTMSTVEEAEKAVD  NRYDLSGRLLTVNKAAPRGSRPE  PRTFQSA+R
Sbjct: 181 DTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYR 240

Query: 241 IYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 300
           +YVGNLPWDVDNARLEQ+FSEHGKVV+ARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL
Sbjct: 241 LYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 300

Query: 301 DGQSLDGRAIRVNVAEEKPRRNF 324
           DGQS+DGRAIRVNVAEE+PRRNF
Sbjct: 301 DGQSIDGRAIRVNVAEERPRRNF 305

[Close]

BLAST of Spg007599 vs. ExPASy TrEMBL
Match: A0A6J1KKH1 (28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496092 PE=4 SV=1)

HSP 1 Score: 525.0 bits (1351), Expect = 2.2e-145
Identity = 277/323 (85.76%), Postives = 288/323 (89.16%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADSCLLSLPSVFSCRTPHSFLSFPSKFIPFHLSSSHSSVFSASKK 60
           MASTSATSILKPLSKAD CLLSLPSVF+ R P SFLSFPSKFIPFHLSSSHSSVF  SKK
Sbjct: 1   MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKK 60

Query: 61  KTHLSSLIASVAQEDDTITIDQKLGSDEEGGPHWENQELSETESRISDWEGEGEEDGGSE 120
           K HLSSLIASVAQEDDTITIDQKL  DEEG                  WE EGE  GGSE
Sbjct: 61  KPHLSSLIASVAQEDDTITIDQKLAGDEEG------------------WESEGEAVGGSE 120

Query: 121 AEGGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNR 180
           AEGGLLELG++EEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEK GTVEIAEV+YNR
Sbjct: 121 AEGGLLELGEDEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNR 180

Query: 181 ETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERAPRTFQSAFR 240
           +TDQSRGFGFVTMSTVEEAEKAVD  NRYDLSGRLLTVNKAAPRGSRPE  PRTFQSA+R
Sbjct: 181 DTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYR 240

Query: 241 IYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 300
           +YVGNLPWDVDNARLEQ+FSEHGKVV+ARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL
Sbjct: 241 LYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAAL 300

Query: 301 DGQSLDGRAIRVNVAEEKPRRNF 324
           DGQS+DGRAIRVNVAEE+PRRNF
Sbjct: 301 DGQSIDGRAIRVNVAEERPRRNF 305

[Close]

BLAST of Spg007599 vs. ExPASy TrEMBL
Match: A0A0A0LNS8 (Ribonucleoprotein OS=Cucumis sativus OX=3659 GN=Csa_1G002890 PE=4 SV=1)

HSP 1 Score: 516.2 bits (1328), Expect = 1.0e-142
Identity = 278/331 (83.99%), Postives = 294/331 (88.82%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADSCLLSLPSVFSCRTPHSFLSFPSKFIPFHL--SSSHSSVFSAS 60
           MAS+SATS+ KPLSK DSC LSLPS+F+ R PH+FLSFPSKFIPFHL  SSS+SS FS S
Sbjct: 74  MASSSATSLFKPLSKPDSCFLSLPSLFTGRPPHTFLSFPSKFIPFHLSSSSSYSSGFSPS 133

Query: 61  KKKTHLSSL--IASVAQEDDTITIDQKLGSD----EEGGPHWENQELSETESRISDWEGE 120
           KKK HL S+   +  AQEDDTITID KL +D    EEGGPHWEN+ELSETESRISDWEGE
Sbjct: 134 KKKPHLPSVAQTSDWAQEDDTITIDPKLDNDENGGEEGGPHWENEELSETESRISDWEGE 193

Query: 121 GEEDGGSEAEGGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVE 180
           G EDGGSEAE G  E  DEE E+G Y EPNEDAKLFVGNLPYD+DS+KLAMLFEKAGTVE
Sbjct: 194 G-EDGGSEAEVGGDEEEDEEGEQGPYEEPNEDAKLFVGNLPYDIDSEKLAMLFEKAGTVE 253

Query: 181 IAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERAP 240
           IAEVIYNRETD+SRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSR ER P
Sbjct: 254 IAEVIYNRETDRSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRQEREP 313

Query: 241 RTFQSAFRIYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETG 300
           R FQ  FRIYVGNLPWDVDN RLEQLFSEHGKVV+ARVLYDRDSGRSRGFGFVTMADETG
Sbjct: 314 RPFQPTFRIYVGNLPWDVDNGRLEQLFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETG 373

Query: 301 MNDAIAALDGQSLDGRAIRVNVAEEKPRRNF 324
           MNDAIAALDGQSLDGRAIRVNVAEE+PRRNF
Sbjct: 374 MNDAIAALDGQSLDGRAIRVNVAEERPRRNF 403

[Close]

BLAST of Spg007599 vs. ExPASy TrEMBL
Match: A0A6J1E0P7 (28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111429756 PE=4 SV=1)

HSP 1 Score: 515.0 bits (1325), Expect = 2.3e-142
Identity = 281/337 (83.38%), Postives = 302/337 (89.61%), Query Frame = 0


Query: 1   MASTSATSILKPLSKADSCLLSLPSVFSCRTPHSFLSFPSKF--IPFHLSSSH-SSVFSA 60
           MAS+SATSILKPLSKADSCLLSLPS+F+CR PHSFLSFPSKF   PFHLSSSH SS+FS+
Sbjct: 1   MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSS 60

Query: 61  SKKKTHLSSLIASVA------QEDDTITIDQKLGSDEEG--GPHWENQELSETESRISDW 120
           SKKKTHLSSL+ASVA      QEDDTITID KL  DE+G  GPHWENQELSE ESRISDW
Sbjct: 61  SKKKTHLSSLVASVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDW 120

Query: 121 --EGEGEEDGGSEAE-GGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFE 180
             EGEGE+DGGSE E GG+LELGD  EEEG   EPNEDAKL+VGNL YDVDSQKLAMLFE
Sbjct: 121 EGEGEGEDDGGSEGEGGGVLELGD--EEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFE 180

Query: 181 KAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGS 240
           KAGTVEIAEVIY+R++D+SRGFGFVTMS+VEEAEKAVDTFNRY+  GR L VNKAA RGS
Sbjct: 181 KAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRPLVVNKAAARGS 240

Query: 241 RPERAPRTFQSAFRIYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVT 300
           RPER PRTFQ AFRIYVGNL W+VD+ARLEQ+FSEHGKVV+ARVLYDRDSGRSRGFGFVT
Sbjct: 241 RPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVT 300

Query: 301 MADETGMNDAIAALDGQSLDGRAIRVNVAEEKPRRNF 324
           MADETGMNDAIAALDGQS+DGRAIRVNVAEEKPRRNF
Sbjct: 301 MADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335

[Close]

BLAST of Spg007599 vs. TAIR 10
Match: AT4G24770.1 (31-kDa RNA binding protein )

HSP 1 Score: 328.2 bits (840), Expect = 7.6e-90
Identity = 200/338 (59.17%), Postives = 240/338 (71.01%), Query Frame = 0


Query: 1   MASTSATSILKPLSKAD---SCLLSLPSVFSCRTPHSFLSFPSKFIP--FHLSSSHSSVF 60
           MAS+  TS LKPL+ AD   S + S PS+ S  +     S     +    +L  S S V 
Sbjct: 1   MASSIVTSSLKPLAMADSSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVS 60

Query: 61  SASKKKTHL--SSLIASVAQEDDTITIDQKLGSDEEGGPHWENQELSETESRISDWE-GE 120
            + K KTHL  S  ++ VAQ  D           EEGG    +  + ETE+ +   +  E
Sbjct: 61  LSLKTKTHLKKSPFVSFVAQTSDWA---------EEGGE--GSVAVEETENSLESQDVSE 120

Query: 121 GEEDGGSEAEGGLLELGDEEE---------EEGSYVEPNEDAKLFVGNLPYDVDSQKLAM 180
           G+E  G  +EG + E GDE E         E   + EP+E+AKLFVGNL YDV+SQ LAM
Sbjct: 121 GDESEGDASEGDVSE-GDESEGDVSEGAVSERAEFPEPSEEAKLFVGNLAYDVNSQALAM 180

Query: 181 LFEKAGTVEIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAP 240
           LFE+AGTVEIAEVIYNRETDQSRGFGFVTMS+V+EAE AV+ FNRYDL+GRLLTVNKAAP
Sbjct: 181 LFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAP 240

Query: 241 RGSRPERAPRTFQSAFRIYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFG 300
           RGSRPERAPR ++ AFR+YVGNLPWDVDN RLEQLFSEHGKVVEARV+YDR++GRSRGFG
Sbjct: 241 RGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFG 300

Query: 301 FVTMADETGMNDAIAALDGQSLDGRAIRVNVAEEKPRR 322
           FVTM+D   +N+AI+ALDGQ+L+GRAIRVNVAEE+P R
Sbjct: 301 FVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERPPR 326

[Close]

BLAST of Spg007599 vs. TAIR 10
Match: AT5G50250.1 (chloroplast RNA-binding protein 31B )

HSP 1 Score: 292.4 bits (747), Expect = 4.6e-79
Identity = 160/270 (59.26%), Postives = 202/270 (74.81%), Query Frame = 0


Query: 53  SVFSASKKKTHLSSLIASVAQEDDTITIDQKLGSDEEGGPHWENQELSETESRISDWEGE 112
           S+F+ S  ++H  +   S++     +T+  K  +     P      +    S+ S+W  E
Sbjct: 28  SIFNISSSESHRFNF--SLSSRPVNLTLSLKSKTLRNSSP------VVTFVSQTSNWAEE 87

Query: 113 GE-EDGGSEAEGGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTV 172
            E EDG        ++   E E+   + EP E+AKLFVGNLPYDVDSQ LAMLFE+AGTV
Sbjct: 88  EEGEDGSIGGTSVTVDESFESEDGVGFPEPPEEAKLFVGNLPYDVDSQALAMLFEQAGTV 147

Query: 173 EIAEVIYNRETDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERA 232
           EI+EVIYNR+TDQSRGFGFVTMSTVEEAEKAV+ FN ++++GR LTVN+AAPRGSRPER 
Sbjct: 148 EISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQ 207

Query: 233 PRTFQSAFRIYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADET 292
           PR + +AFRIYVGNLPWDVD+ RLE+LFSEHGKVV+ARV+ DR++GRSRGFGFV M++E 
Sbjct: 208 PRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNEN 267

Query: 293 GMNDAIAALDGQSLDGRAIRVNVAEEKPRR 322
            +N AIAALDGQ+L+GRAI+VNVAEE+ RR
Sbjct: 268 EVNVAIAALDGQNLEGRAIKVNVAEERTRR 289

[Close]

BLAST of Spg007599 vs. TAIR 10
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 196.4 bits (498), Expect = 3.4e-50
Identity = 111/219 (50.68%), Postives = 136/219 (62.10%), Query Frame = 0


Query: 122 EGGLLELGDEEEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNRE 181
           E G  ++   +E+  S      D KLFVGNLP++VDS +LA LFE AG VE+ EVIY++ 
Sbjct: 73  EDGFADVAPPKEQSFS-----ADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKI 132

Query: 182 TDQSRGFGFVTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPERAPRTFQSAF-- 241
           T +SRGFGFVTMS+V E E A   FN Y+L GR L VN   P   R +   R  +S+F  
Sbjct: 133 TGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGS 192

Query: 242 -----------------RIYVGNLPWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGF 301
                            R+YVGNL W VD+  LE LFSE GKVVEARV+YDRDSGRS+GF
Sbjct: 193 SGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGF 252

Query: 302 GFVTMADETGMNDAIAALDGQSLDGRAIRVNVAEEKPRR 322
           GFVT      + +AI +LDG  LDGR IRV+ AE +P R
Sbjct: 253 GFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPR 286

[Close]

BLAST of Spg007599 vs. TAIR 10
Match: AT3G53460.1 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-43
Identity = 108/255 (42.35%), Postives = 132/255 (51.76%), Query Frame = 0


Query: 134 EEGSYVEPNE---DAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNRETDQSRGFGF 193
           ++ + VE N    D KLFVGNL ++VDS +LA LFE AG VE+ EVIY++ T +SRGFGF
Sbjct: 85  DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 144

Query: 194 VTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPE---RAPRT------------- 253
           VTMST  E E A   FN Y+  GR L VN   P   R E   R PR+             
Sbjct: 145 VTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGS 204

Query: 254 ------------------------------------------------FQSAFRIYVGNL 313
                                                             S  R+YVGNL
Sbjct: 205 ERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNL 264

Query: 314 PWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLD 322
            W VD+  LE LF+E GKVVEARV+YDRDSGRS+GFGFVT++    +  AI +L+G  LD
Sbjct: 265 SWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLD 324

[Close]

BLAST of Spg007599 vs. TAIR 10
Match: AT3G53460.2 (chloroplast RNA-binding protein 29 )

HSP 1 Score: 174.1 bits (440), Expect = 1.8e-43
Identity = 108/255 (42.35%), Postives = 132/255 (51.76%), Query Frame = 0


Query: 134 EEGSYVEPNE---DAKLFVGNLPYDVDSQKLAMLFEKAGTVEIAEVIYNRETDQSRGFGF 193
           ++ + VE N    D KLFVGNL ++VDS +LA LFE AG VE+ EVIY++ T +SRGFGF
Sbjct: 85  DDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGF 144

Query: 194 VTMSTVEEAEKAVDTFNRYDLSGRLLTVNKAAPRGSRPE---RAPRT------------- 253
           VTMST  E E A   FN Y+  GR L VN   P   R E   R PR+             
Sbjct: 145 VTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGGYGS 204

Query: 254 ------------------------------------------------FQSAFRIYVGNL 313
                                                             S  R+YVGNL
Sbjct: 205 ERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYVGNL 264

Query: 314 PWDVDNARLEQLFSEHGKVVEARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSLD 322
            W VD+  LE LF+E GKVVEARV+YDRDSGRS+GFGFVT++    +  AI +L+G  LD
Sbjct: 265 SWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGADLD 324

The following BLAST results are available for this feature:

BLAST of Spg007599 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022134798.1	2.0e-148	86.43	28 kDa ribonucleoprotein, chloroplastic-like [Momordica charantia]	[more]
XP_038878997.1	1.3e-147	86.63	28 kDa ribonucleoprotein, chloroplastic-like [Benincasa hispida]	[more]
KAG6587437.1	9.1e-146	85.76	hypothetical protein SDJN03_16002, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022931735.1	1.2e-145	86.07	28 kDa ribonucleoprotein, chloroplastic [Cucurbita moschata]	[more]
XP_023530762.1	2.7e-145	85.76	28 kDa ribonucleoprotein, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg007599 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q04836	1.1e-88	59.17	31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31A...	[more]
P19683	3.1e-88	58.05	31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P19682	5.0e-86	55.66	28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=...	[more]
P28644	2.9e-78	68.10	28 kDa ribonucleoprotein, chloroplastic OS=Spinacia oleracea OX=3562 PE=1 SV=1	[more]
Q9FGS0	6.5e-78	59.26	RNA-binding protein CP31B, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CP31...	[more]

BLAST of Spg007599 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C316	9.5e-149	86.43	28 kDa ribonucleoprotein, chloroplastic-like OS=Momordica charantia OX=3673 GN=L...	[more]
A0A6J1F0A4	5.8e-146	86.07	28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1KKH1	2.2e-145	85.76	28 kDa ribonucleoprotein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111496...	[more]
A0A0A0LNS8	1.0e-142	83.99	Ribonucleoprotein OS=Cucumis sativus OX=3659 GN=Csa_1G002890 PE=4 SV=1	[more]
A0A6J1E0P7	2.3e-142	83.38	28 kDa ribonucleoprotein, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LO...	[more]

BLAST of Spg007599 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G24770.1	7.6e-90	59.17	31-kDa RNA binding protein	[more]
AT5G50250.1	4.6e-79	59.26	chloroplast RNA-binding protein 31B	[more]
AT2G37220.1	3.4e-50	50.68	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G53460.1	1.8e-43	42.35	chloroplast RNA-binding protein 29	[more]
AT3G53460.2	1.8e-43	42.35	chloroplast RNA-binding protein 29	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 240..313 e-value: 5.2E-29 score: 112.4 coord: 146..219 e-value: 3.0E-25 score: 99.9
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 147..216 e-value: 4.0E-20 score: 71.4 coord: 241..311 e-value: 2.2E-21 score: 75.5
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 239..317 score: 20.303486
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 145..223 score: 18.32506
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 229..322 e-value: 1.3E-29 score: 105.2 coord: 78..228 e-value: 1.3E-26 score: 95.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 83..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 108..124
None	No IPR available	PANTHER	PTHR48025	OS02G0815200 PROTEIN	coord: 1..322
None	No IPR available	PANTHER	PTHR48025:SF8	RIBONUCLEOPROTEIN	coord: 1..322
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 240..316 e-value: 2.34962E-35 score: 121.181
None	No IPR available	CDD	cd12399	RRM_HP0827_like	coord: 146..223 e-value: 3.96082E-35 score: 120.796
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 141..233
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 236..321

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg007599.1	Spg007599.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding