Spg007271 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg007271
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	30S ribosomal protein S9
Location	scaffold9: 46397763 .. 46399887 (-)
RNA-Seq Expression	Spg007271
Synteny	Spg007271

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCATTCTGGATAGAGCTCGAAAATGGCTACTTCTATATCCTCTCTCGCATTTTCTCTTTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGAAGCCAAATGCCCTGTCCTTTCCCCGCTCAAAATCTCTTGTAATTTCCCATACGGGCACCAATTCCCCACTTGTGGTATCTGCCTCCGCCGCTGCCGGGGTTGAGACGGCGGAACTTAGGAACTTCGTGAAATCGAGGCTCCCTGGTGGCTTTGCCGCGCAAACGCTGATCGGCACTGGTCGCCGGAAATCTGCCGTTGCTCGTGTTGTCCTAAAAGAAGGCACTGGCAAAGTTATTATCAATTACCGCGATGCTAAGGTCCTCTATCGTTTCCTTTATTCGTGTACTTGCCTTTAGTTTAATTCATCTTGGTTTCCTGATTTTGGTACTGGATGTTCTTTGGACGATTTAGGGTTTTTGTGTCTTTTGCTTAATTCGACTAGGTTGGTTGGATGGGAATGCAAGTGTTTTTTGGATTAAACCGAAGATTGTCATGATAGAATTGTGATTTCCGTTTTCTATTGTTTAGTTCTTTTGGTCAGTCTTTGTTATCGATCTGCGGCAATTATTATGTTGAATTGGGATTTGGGAATGAACTTGAGAACAAAAGTCTTGACATTCTAGAGCATTTAAGACTCTTTAACACTAAATTCTAGGATTTTCGCCTCTTCGTCTCATATGGTAAACTTAGATTAGATTCCATTGCTTGGTGCCAAATGCAGAGGGATTGTGGAAGAGTGGTTTCATCCATCACTAGGGATAAAGGACTGTTACGACTGTATCTATATGTTGTGCTTCTTTTAAGTTTGAGTTTCGGCTTCCAGTGAAATAATTCTAAATGCCAAAAGACATGTCTATTAGGGAAACTGAGCAATTCCCTCGTTCTTTCTCAGTGGGTGTGGGAGTGAAAATGTACTTTTGTTCTTCCACTTCCATCACATGTGGAAATCTTTAACATTTAATGATGTTAGATCACATTGCAAATCCTTCATTTGCTAGTGTTCAGCAACTCTCTTCATATCAATTGACATGGTGCTTCCGGAGGTGGCACCATAATCTCAAGTCTTGTATAGTTATAACCCATACCTACATCTGATCGTTAATATGTTAAGATTCTGGTTTCTCTCTATGAACAAGTGAATTTAGTGACCATATGTGTTTCATTTCTTGTTAGGATGCCATTTTCTCTTAAATGTTTATCGGGTTTCCCTGGTATTGATGCTTGGATAACCCCATTGAAACTTGACGTGATGACACAACATTTTGAGTAAGGAGAGGAACCATCCATTGTGTACTTGAGCTTCTAGTTATTGATTTAGGACAGCTTGTTAACAACAACCAAATGGTTTTGTATGAATTTTAAGTTGAGTGTGCGTTCAGTTGAATTTTACTCATTTCTGGGTTGGAACATACAATGCGTTGCAGGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCATTAGTAACATTGGGATATGAAAGTAGCTACGATGTATTCGTTAAAGCTGAAGGAGGTGGCCTCTCCGGCCAGGCTCAAGCAATTTCTCTCGGCATTGCTCGTGCTCTGCTAAAGGTGAGTGACGATCATAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCCCAATTCTCCAAGCGTTGAGGTTCCAACTCTTGTCAATTTTCCTCACGAATTGTTTTCCATAGCCTCCTTTCCTACATTAATTGTACAACCCAGATGTTATCTTGTATCTTCTTTCCTCTCTAATGTAGTGTTATCTTAAATGTTTTCTCCATATGAAATCTGAGCAGGAGCGAGGATATGTATTAAGTAGTCGATCCTTAATTGATCATGATAATTTTTTTTAAACTTATTTTTTGTCCATATAATTTGACTTTAGGATCTTCGTTCTGTTGTGATTTAGTGCAGAGAACTTGATTACTTTGATGTTATCTTGTTACATTTTATTTTAACATGCTCTGTCATAATCGATTCGTCCTAGAACAAAAAACTCTGTATTATTGGCATCATGTGCAGCCACG

mRNA sequence

ATGGCTACTTCTATATCCTCTCTCGCATTTTCTCTTTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGAAGCCAAATGCCCTGTCCTTTCCCCGCTCAAAATCTCTTGTAATTTCCCATACGGGCACCAATTCCCCACTTGTGGTATCTGCCTCCGCCGCTGCCGGGGTTGAGACGGCGGAACTTAGGAACTTCGTGAAATCGAGGCTCCCTGGTGGCTTTGCCGCGCAAACGCTGATCGGCACTGGTCGCCGGAAATCTGCCGTTGCTCGTGTTGTCCTAAAAGAAGGCACTGGCAAAGTTATTATCAATTACCGCGATGCTAAGGATTTTCGCCTCTTCGTCTCATATGGTAAACTTAGATTAGATTCCATTGCTTGGTGCCAAATGCAGAGGGATTGTGGAAGAGTGGTTTCATCCATCACTAGGGATAAAGGACTGTTACGACTGTATCTATATGTTGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCATTAGTAACATTGGGATATGAAAGTAGCTACGATGTATTCGTTAAAGCTGAAGGAGGTGGCCTCTCCGGCCAGGCTCAAGCAATTTCTCTCGGCATTGCTCGTGCTCTGCTAAAGGTGAGTGACGATCATAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCCCAATTCTCCAAGCGTTGA

Coding sequence (CDS)

ATGGCTACTTCTATATCCTCTCTCGCATTTTCTCTTTCTTCTCTCTCGTTTTCTTCCCAAGTATCACAGAAGCCAAATGCCCTGTCCTTTCCCCGCTCAAAATCTCTTGTAATTTCCCATACGGGCACCAATTCCCCACTTGTGGTATCTGCCTCCGCCGCTGCCGGGGTTGAGACGGCGGAACTTAGGAACTTCGTGAAATCGAGGCTCCCTGGTGGCTTTGCCGCGCAAACGCTGATCGGCACTGGTCGCCGGAAATCTGCCGTTGCTCGTGTTGTCCTAAAAGAAGGCACTGGCAAAGTTATTATCAATTACCGCGATGCTAAGGATTTTCGCCTCTTCGTCTCATATGGTAAACTTAGATTAGATTCCATTGCTTGGTGCCAAATGCAGAGGGATTGTGGAAGAGTGGTTTCATCCATCACTAGGGATAAAGGACTGTTACGACTGTATCTATATGTTGAATACCTTCAAGGAAATCCATTGTGGCTTCAATATGTGAAAGTTCCATTAGTAACATTGGGATATGAAAGTAGCTACGATGTATTCGTTAAAGCTGAAGGAGGTGGCCTCTCCGGCCAGGCTCAAGCAATTTCTCTCGGCATTGCTCGTGCTCTGCTAAAGGTGAGTGACGATCATAGATCACCTCTAAAGAAAGAAGGGCTTTTGACAAGAGACTCTAGAGTTGTGGAGAGAAAGAAGGCTGGTCTCAAGAAAGCCCGTAAAGCCCCCCAATTCTCCAAGCGTTGA

Protein sequence

MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETAELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKLRLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR

Homology

[Close]

BLAST of Spg007271 vs. NCBI nr
Match: XP_038903352.1 (30S ribosomal protein S9, chloroplastic [Benincasa hispida])

HSP 1 Score: 332.4 bits (851), Expect = 3.3e-87
Identity = 192/249 (77.11%), Postives = 198/249 (79.52%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATS+SSLAFSLSSLSFSSQVS KPNALSFPRSKSL ISH  + +PLVVSASAAAGVETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSHKPNALSFPRSKSLQISHASSTTPLVVSASAAAGVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKL 120
           +LR+FVKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAK           
Sbjct: 61  DLRSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAK----------- 120

Query: 121 RLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSY 180
                                             EYLQGNPLWLQYVKVPLVTLGYESSY
Sbjct: 121 ----------------------------------EYLQGNPLWLQYVKVPLVTLGYESSY 180

Query: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA 240
           DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA
Sbjct: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA 204

Query: 241 RKAPQFSKR 250
           RKAPQFSKR
Sbjct: 241 RKAPQFSKR 204

[Close]

BLAST of Spg007271 vs. NCBI nr
Match: XP_022143016.1 (30S ribosomal protein S9, chloroplastic [Momordica charantia])

HSP 1 Score: 332.4 bits (851), Expect = 3.3e-87
Identity = 191/249 (76.71%), Postives = 199/249 (79.92%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MA+SISSLAFSLSSLSFSSQ+SQKPN LSFPRSKSLVISH   +SPLVVSASAA GVETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKL 120
           ELR+FVKSRLPGGFAAQTLIGTGRRKSA+ARVV++EGTGKVIINYRDAK           
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAK----------- 120

Query: 121 RLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSY 180
                                             EYLQGNPLWLQYVKVPLVTLGYESSY
Sbjct: 121 ----------------------------------EYLQGNPLWLQYVKVPLVTLGYESSY 180

Query: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA 240
           DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTRDSRVVERKKAGLKKA
Sbjct: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTRDSRVVERKKAGLKKA 204

Query: 241 RKAPQFSKR 250
           RKAPQFSKR
Sbjct: 241 RKAPQFSKR 204

[Close]

BLAST of Spg007271 vs. NCBI nr
Match: XP_022940950.1 (30S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S ribosomal protein S9, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037838.1 30S ribosomal protein S9, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 328.9 bits (842), Expect = 3.7e-86
Identity = 190/249 (76.31%), Postives = 198/249 (79.52%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATS+SSLAFSLSSLSFSSQVSQ PN+LSFPRSKSLVISH  +NSPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKL 120
           EL+N+VKSRLPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAK           
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAK----------- 120

Query: 121 RLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSY 180
                                             EYLQGNPLWLQYVKVPL+TLGYESSY
Sbjct: 121 ----------------------------------EYLQGNPLWLQYVKVPLLTLGYESSY 180

Query: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA 240
           DVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTRDSRVVERKKAGLKKA
Sbjct: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKA 204

Query: 241 RKAPQFSKR 250
           RKAPQFSKR
Sbjct: 241 RKAPQFSKR 204

[Close]

BLAST of Spg007271 vs. NCBI nr
Match: XP_022982074.1 (30S ribosomal protein S9, chloroplastic [Cucurbita maxima])

HSP 1 Score: 328.2 bits (840), Expect = 6.3e-86
Identity = 190/249 (76.31%), Postives = 198/249 (79.52%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATS+SSLAFSLSSLSFSSQVSQ PNALSFPRSKSLVISH+ +NSPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKL 120
           EL+N+VKSRLPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAK           
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAK----------- 120

Query: 121 RLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSY 180
                                             EYLQGNPLWLQYVKVPL+TLGYESSY
Sbjct: 121 ----------------------------------EYLQGNPLWLQYVKVPLLTLGYESSY 180

Query: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA 240
           DVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PLKKEGLLTRDSRVVERKKAGLKKA
Sbjct: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTRDSRVVERKKAGLKKA 204

Query: 241 RKAPQFSKR 250
           RKAPQFSKR
Sbjct: 241 RKAPQFSKR 204

[Close]

BLAST of Spg007271 vs. NCBI nr
Match: XP_023523256.1 (30S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.8 bits (839), Expect = 8.2e-86
Identity = 189/249 (75.90%), Postives = 198/249 (79.52%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATS+SSLAFSLSSLSFSSQ+SQ PNALSFPRSKSLVISH  +NSPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQLSQMPNALSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKL 120
           EL+N+VKSRLPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAK           
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAK----------- 120

Query: 121 RLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSY 180
                                             EYLQGNPLWLQYVKVPL+TLGYES+Y
Sbjct: 121 ----------------------------------EYLQGNPLWLQYVKVPLLTLGYESNY 180

Query: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA 240
           DVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTRDSRVVERKKAGLKKA
Sbjct: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKA 204

Query: 241 RKAPQFSKR 250
           RKAPQFSKR
Sbjct: 241 RKAPQFSKR 204

[Close]

BLAST of Spg007271 vs. ExPASy Swiss-Prot
Match: Q9XJ27 (30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 PE=2 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 6.5e-70
Identity = 157/251 (62.55%), Postives = 181/251 (72.11%), Query Frame = 0


Query: 4   SISSLAFSLSSLSFSSQVSQKPNALSFPRSKSL--VISHTGTNSPLVVSASAAA---GVE 63
           SI++LA SLSSLSFSSQVSQ+PN +SFPR+ S+  + + +   + L ++A+ +A     E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYG 123
             EL+ +VKSRLPGGFAAQ +IGTGRRK A+ARVVL+EGTGKVIINYRDAK         
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAK--------- 122

Query: 124 KLRLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYES 183
                                               EYLQGNPLWLQYVKVPLVTLGYE+
Sbjct: 123 ------------------------------------EYLQGNPLWLQYVKVPLVTLGYEN 182

Query: 184 SYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLK 243
           SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHRSPLKKEGLLTRD+RVVERKKAGLK
Sbjct: 183 SYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLLTRDARVVERKKAGLK 208

Query: 244 KARKAPQFSKR 250
           KARKAPQFSKR
Sbjct: 243 KARKAPQFSKR 208

[Close]

BLAST of Spg007271 vs. ExPASy Swiss-Prot
Match: P82278 (30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE=1 SV=2)

HSP 1 Score: 257.3 bits (656), Expect = 1.8e-67
Identity = 151/253 (59.68%), Postives = 172/253 (67.98%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAG---- 60
           MA SISSL  S +SLSF+S ++ KP  L   R+K   +S+     PLV++A++A      
Sbjct: 1   MAVSISSLTSSFASLSFTSNLTPKPQTLPMARTKPFSLSNPAVVKPLVITATSATAPVEV 60

Query: 61  VETAELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVS 120
            ETA+L  FVKSRLPGGFAAQT+IGTGRRK A+ARVVL+EGTGK IINYRDAK       
Sbjct: 61  AETADLEKFVKSRLPGGFAAQTVIGTGRRKCAIARVVLQEGTGKFIINYRDAK------- 120

Query: 121 YGKLRLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGY 180
                                                 EYLQGNPLWLQYVK PL TLGY
Sbjct: 121 --------------------------------------EYLQGNPLWLQYVKTPLATLGY 180

Query: 181 ESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAG 240
           E++YDVFVKA GGGLSGQAQAISLG+ARALLKVS  HR+PLK+EGLLTRDSR+VERKK G
Sbjct: 181 ETNYDVFVKAHGGGLSGQAQAISLGVARALLKVSASHRAPLKQEGLLTRDSRIVERKKPG 208

Query: 241 LKKARKAPQFSKR 250
           LKKARKAPQFSKR
Sbjct: 241 LKKARKAPQFSKR 208

[Close]

BLAST of Spg007271 vs. ExPASy Swiss-Prot
Match: Q8DMK7 (30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=197221 GN=rpsI PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.9e-29
Identity = 80/170 (47.06%), Postives = 98/170 (57.65%), Query Frame = 0


Query: 80  IGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKLRLDSIAWCQMQRDCGRVVS 139
           +GTGRRKSAVARV L  G+G++ IN R+  D                             
Sbjct: 13  LGTGRRKSAVARVRLIPGSGQLWINGRNGAD----------------------------- 72

Query: 140 SITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAIS 199
                           YLQ NP++L  VK PL TLG E+SYD++V A GGGL+GQA AI 
Sbjct: 73  ----------------YLQNNPIYLNLVKAPLETLGLENSYDIYVNATGGGLTGQADAIR 132

Query: 200 LGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR 250
           LGIARAL ++  ++R PLK EG LTRD R  ER+K GL+KARKAPQ+SKR
Sbjct: 133 LGIARALCQLDIENRKPLKTEGYLTRDPRAKERRKYGLRKARKAPQYSKR 137

[Close]

BLAST of Spg007271 vs. ExPASy Swiss-Prot
Match: Q9MUV1 (30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.3e-29
Identity = 85/170 (50.00%), Postives = 96/170 (56.47%), Query Frame = 0


Query: 80  IGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKLRLDSIAWCQMQRDCGRVVS 139
           +GTGRRKSAVARV L  G G+VIIN                                   
Sbjct: 13  LGTGRRKSAVARVRLVPGNGEVIIN----------------------------------- 72

Query: 140 SITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAIS 199
                 GL        YLQ N  +L  V+ PL TLG E +YD+ VKA GGGL+GQA+AI 
Sbjct: 73  ------GLPG----TNYLQFNGSYLSAVRSPLETLGLEDNYDIIVKAVGGGLTGQAEAIR 132

Query: 200 LGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR 250
           LG+ARAL  +   +R PLKKEG LTRDSRV ERKK GLKKARKAPQFSKR
Sbjct: 133 LGVARALCTIDTSNRHPLKKEGFLTRDSRVKERKKYGLKKARKAPQFSKR 137

[Close]

BLAST of Spg007271 vs. ExPASy Swiss-Prot
Match: B2ITM7 (30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpsI PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 8.1e-28
Identity = 78/169 (46.15%), Postives = 95/169 (56.21%), Query Frame = 0


Query: 81  GTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKLRLDSIAWCQMQRDCGRVVSS 140
           GTGRRK+AVARV L  GTG++ +N +D          G L                    
Sbjct: 15  GTGRRKNAVARVRLVPGTGQLTVNGKD----------GNL-------------------- 74

Query: 141 ITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSYDVFVKAEGGGLSGQAQAISL 200
                          Y Q NP +L  +K PL TLG E+ YD+ VKAEGGGL+GQA ++ L
Sbjct: 75  ---------------YFQFNPNYLGVIKAPLETLGLENEYDILVKAEGGGLTGQADSVRL 134

Query: 201 GIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKARKAPQFSKR 250
           G+ARAL ++  D+R PLK EG LTRD R  ERKK GL KARKAPQ+SKR
Sbjct: 135 GVARALCQLDPDNRPPLKTEGYLTRDPRAKERKKYGLHKARKAPQYSKR 138

[Close]

BLAST of Spg007271 vs. ExPASy TrEMBL
Match: A0A6J1CNY0 (30S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111013001 PE=3 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.6e-87
Identity = 191/249 (76.71%), Postives = 199/249 (79.92%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MA+SISSLAFSLSSLSFSSQ+SQKPN LSFPRSKSLVISH   +SPLVVSASAA GVETA
Sbjct: 1   MASSISSLAFSLSSLSFSSQISQKPNGLSFPRSKSLVISHPCNSSPLVVSASAATGVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKL 120
           ELR+FVKSRLPGGFAAQTLIGTGRRKSA+ARVV++EGTGKVIINYRDAK           
Sbjct: 61  ELRSFVKSRLPGGFAAQTLIGTGRRKSAIARVVIQEGTGKVIINYRDAK----------- 120

Query: 121 RLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSY 180
                                             EYLQGNPLWLQYVKVPLVTLGYESSY
Sbjct: 121 ----------------------------------EYLQGNPLWLQYVKVPLVTLGYESSY 180

Query: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA 240
           DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHR+PLKKEGLLTRDSRVVERKKAGLKKA
Sbjct: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRAPLKKEGLLTRDSRVVERKKAGLKKA 204

Query: 241 RKAPQFSKR 250
           RKAPQFSKR
Sbjct: 241 RKAPQFSKR 204

[Close]

BLAST of Spg007271 vs. ExPASy TrEMBL
Match: A0A6J1FS60 (30S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111446382 PE=3 SV=1)

HSP 1 Score: 328.9 bits (842), Expect = 1.8e-86
Identity = 190/249 (76.31%), Postives = 198/249 (79.52%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATS+SSLAFSLSSLSFSSQVSQ PN+LSFPRSKSLVISH  +NSPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQMPNSLSFPRSKSLVISHPKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKL 120
           EL+N+VKSRLPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAK           
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAK----------- 120

Query: 121 RLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSY 180
                                             EYLQGNPLWLQYVKVPL+TLGYESSY
Sbjct: 121 ----------------------------------EYLQGNPLWLQYVKVPLLTLGYESSY 180

Query: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA 240
           DVFVKAEGGGLSGQAQAISLGIARALLKVS DHRSPLKKEGLLTRDSRVVERKKAGLKKA
Sbjct: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSADHRSPLKKEGLLTRDSRVVERKKAGLKKA 204

Query: 241 RKAPQFSKR 250
           RKAPQFSKR
Sbjct: 241 RKAPQFSKR 204

[Close]

BLAST of Spg007271 vs. ExPASy TrEMBL
Match: A0A6J1J3K2 (30S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481030 PE=3 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 3.0e-86
Identity = 190/249 (76.31%), Postives = 198/249 (79.52%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATS+SSLAFSLSSLSFSSQVSQ PNALSFPRSKSLVISH+ +NSPLVVSASA + VETA
Sbjct: 1   MATSVSSLAFSLSSLSFSSQVSQIPNALSFPRSKSLVISHSKSNSPLVVSASATSAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKL 120
           EL+N+VKSRLPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAK           
Sbjct: 61  ELKNYVKSRLPGGFAAQTLIGTGRRKSAVARVVLQEGTGKVIINYRDAK----------- 120

Query: 121 RLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSY 180
                                             EYLQGNPLWLQYVKVPL+TLGYESSY
Sbjct: 121 ----------------------------------EYLQGNPLWLQYVKVPLLTLGYESSY 180

Query: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA 240
           DVFVKAEGGGLSGQAQAISLGIARALLKVS DHR PLKKEGLLTRDSRVVERKKAGLKKA
Sbjct: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSADHRPPLKKEGLLTRDSRVVERKKAGLKKA 204

Query: 241 RKAPQFSKR 250
           RKAPQFSKR
Sbjct: 241 RKAPQFSKR 204

[Close]

BLAST of Spg007271 vs. ExPASy TrEMBL
Match: A0A5A7UBW5 (30S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00010 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 3.4e-85
Identity = 189/249 (75.90%), Postives = 197/249 (79.12%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATSISSLAFSLSSLSFSSQVS KP ALSFPRSKSL+IS + + SPL+VSASAAA VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKL 120
           +L++FVKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAK           
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAK----------- 120

Query: 121 RLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSY 180
                                             EYLQGNPLWLQYVKVPLVTLGYESSY
Sbjct: 121 ----------------------------------EYLQGNPLWLQYVKVPLVTLGYESSY 180

Query: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA 240
           DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA
Sbjct: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA 204

Query: 241 RKAPQFSKR 250
           RKAPQFSKR
Sbjct: 241 RKAPQFSKR 204

[Close]

BLAST of Spg007271 vs. ExPASy TrEMBL
Match: A0A1S3CRR0 (30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 3.4e-85
Identity = 189/249 (75.90%), Postives = 197/249 (79.12%), Query Frame = 0


Query: 1   MATSISSLAFSLSSLSFSSQVSQKPNALSFPRSKSLVISHTGTNSPLVVSASAAAGVETA 60
           MATSISSLAFSLSSLSFSSQVS KP ALSFPRSKSL+IS + + SPL+VSASAAA VETA
Sbjct: 1   MATSISSLAFSLSSLSFSSQVSHKPTALSFPRSKSLLISPSSSTSPLLVSASAAAAVETA 60

Query: 61  ELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYGKL 120
           +L++FVKS LPGGFAAQTLIGTGRRKSAVARVVL+EGTGKVIINYRDAK           
Sbjct: 61  DLKSFVKSSLPGGFAAQTLIGTGRRKSAVARVVLREGTGKVIINYRDAK----------- 120

Query: 121 RLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYESSY 180
                                             EYLQGNPLWLQYVKVPLVTLGYESSY
Sbjct: 121 ----------------------------------EYLQGNPLWLQYVKVPLVTLGYESSY 180

Query: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA 240
           DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA
Sbjct: 181 DVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLKKA 204

Query: 241 RKAPQFSKR 250
           RKAPQFSKR
Sbjct: 241 RKAPQFSKR 204

[Close]

BLAST of Spg007271 vs. TAIR 10
Match: AT1G74970.1 (ribosomal protein S9 )

HSP 1 Score: 265.4 bits (677), Expect = 4.6e-71
Identity = 157/251 (62.55%), Postives = 181/251 (72.11%), Query Frame = 0


Query: 4   SISSLAFSLSSLSFSSQVSQKPNALSFPRSKSL--VISHTGTNSPLVVSASAAA---GVE 63
           SI++LA SLSSLSFSSQVSQ+PN +SFPR+ S+  + + +   + L ++A+ +A     E
Sbjct: 3   SITNLASSLSSLSFSSQVSQRPNTISFPRANSVFALPAKSARRASLSITATVSAPPEEEE 62

Query: 64  TAELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDFRLFVSYG 123
             EL+ +VKSRLPGGFAAQ +IGTGRRK A+ARVVL+EGTGKVIINYRDAK         
Sbjct: 63  IVELKKYVKSRLPGGFAAQKIIGTGRRKCAIARVVLQEGTGKVIINYRDAK--------- 122

Query: 124 KLRLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPLVTLGYES 183
                                               EYLQGNPLWLQYVKVPLVTLGYE+
Sbjct: 123 ------------------------------------EYLQGNPLWLQYVKVPLVTLGYEN 182

Query: 184 SYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVERKKAGLK 243
           SYD+FVKA GGGLSGQAQAI+LG+ARALLKVS DHRSPLKKEGLLTRD+RVVERKKAGLK
Sbjct: 183 SYDIFVKAHGGGLSGQAQAITLGVARALLKVSADHRSPLKKEGLLTRDARVVERKKAGLK 208

Query: 244 KARKAPQFSKR 250
           KARKAPQFSKR
Sbjct: 243 KARKAPQFSKR 208

[Close]

BLAST of Spg007271 vs. TAIR 10
Match: AT3G49080.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 5.8e-13
Identity = 66/198 (33.33%), Postives = 88/198 (44.44%), Query Frame = 0


Query: 52  SAAAGVETAELRNFVKSRLPGGFAAQTLIGTGRRKSAVARVVLKEGTGKVIINYRDAKDF 111
           S+ A +E     +  K+R+          GTGRRK ++ARV ++ G GK  +N    K+F
Sbjct: 279 SSRAEIELQMQEDIAKARVRQVDETGRAYGTGRRKCSIARVWIQPGEGKFQVN---EKEF 338

Query: 112 RLFVSYGKLRLDSIAWCQMQRDCGRVVSSITRDKGLLRLYLYVEYLQGNPLWLQYVKVPL 171
            ++       LD  A                    LLR                    PL
Sbjct: 339 DVYFP----MLDHRA-------------------ALLR--------------------PL 398

Query: 172 VTLGYESSYDVFVKAEGGGLSGQAQAISLGIARALLKVSDDHRSPLKKEGLLTRDSRVVE 231
                   +D+    +GGG +GQ  AI LGI+RAL     D R+ L+  G LTRDSRVVE
Sbjct: 399 AETKTLGRWDIKCTVKGGGTTGQVGAIQLGISRALQNWEPDMRTSLRAAGFLTRDSRVVE 430

Query: 232 RKKAGLKKARKAPQFSKR 250
           RKK G  KARK+ Q+ KR
Sbjct: 459 RKKPGKAKARKSFQWVKR 430

The following BLAST results are available for this feature:

BLAST of Spg007271 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903352.1	3.3e-87	77.11	30S ribosomal protein S9, chloroplastic [Benincasa hispida]	[more]
XP_022143016.1	3.3e-87	76.71	30S ribosomal protein S9, chloroplastic [Momordica charantia]	[more]
XP_022940950.1	3.7e-86	76.31	30S ribosomal protein S9, chloroplastic [Cucurbita moschata] >KAG6608514.1 30S r...	[more]
XP_022982074.1	6.3e-86	76.31	30S ribosomal protein S9, chloroplastic [Cucurbita maxima]	[more]
XP_023523256.1	8.2e-86	75.90	30S ribosomal protein S9, chloroplastic [Cucurbita pepo subsp. pepo]	[more]

BLAST of Spg007271 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9XJ27	6.5e-70	62.55	30S ribosomal protein S9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS9 ...	[more]
P82278	1.8e-67	59.68	30S ribosomal protein S9, chloroplastic OS=Spinacia oleracea OX=3562 GN=PRPS9 PE...	[more]
Q8DMK7	1.9e-29	47.06	30S ribosomal protein S9 OS=Thermosynechococcus elongatus (strain BP-1) OX=19722...	[more]
Q9MUV1	7.3e-29	50.00	30S ribosomal protein S9, chloroplastic OS=Mesostigma viride OX=41882 GN=rps9 PE...	[more]
B2ITM7	8.1e-28	46.15	30S ribosomal protein S9 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) O...	[more]

BLAST of Spg007271 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CNY0	1.6e-87	76.71	30S ribosomal protein S9, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J1FS60	1.8e-86	76.31	30S ribosomal protein S9, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A6J1J3K2	3.0e-86	76.31	30S ribosomal protein S9, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111481...	[more]
A0A5A7UBW5	3.4e-85	75.90	30S ribosomal protein S9 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CRR0	3.4e-85	75.90	30S ribosomal protein S9, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103503984 ...	[more]

BLAST of Spg007271 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74970.1	4.6e-71	62.55	ribosomal protein S9	[more]
AT3G49080.1	5.8e-13	33.33	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000754	Ribosomal protein S9	PFAM	PF00380	Ribosomal_S9	coord: 154..249 e-value: 2.1E-30 score: 105.7 coord: 83..111 e-value: 7.8E-5 score: 23.2
IPR000754	Ribosomal protein S9	PANTHER	PTHR21569	RIBOSOMAL PROTEIN S9	coord: 60..249
IPR014721	Ribosomal protein S5 domain 2-type fold, subgroup	GENE3D	3.30.230.10		coord: 70..249 e-value: 6.4E-44 score: 151.3
None	No IPR available	PANTHER	PTHR21569:SF1	28S RIBOSOMAL PROTEIN S9, MITOCHONDRIAL	coord: 60..249
IPR020574	Ribosomal protein S9, conserved site	PROSITE	PS00360	RIBOSOMAL_S9	coord: 188..206
IPR023035	Ribosomal protein S9, bacterial/plastid	HAMAP	MF_00532_B	Ribosomal_S9_B	coord: 74..249 score: 30.183716
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 79..113
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 154..249

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg007271.1	Spg007271.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0000312	plastid small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome