Spg007145 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg007145
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Location	scaffold9: 46659595 .. 46660342 (-)
RNA-Seq Expression	Spg007145
Synteny	Spg007145

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTTCTCGGTGTGTAGGGATTGGTGCCGATCAAAAGACTTCTGGGCTGAAACTATTCAGAGCATTGACAAATCGGAGTGCAATTTGGCTGGACAAATCCTATGGGCTATTTGGAATATCAGAAATCAATGCAAAACAAATTATCAGTGATATTAGAAGCCTAACTGATGCGTTTGTGTTGAGAGAGTCAAACCTGAAGCCGAAAGAATCTAAGAACCAGGCGAGTCATGCGAGTTGGGATCCTCCGAATTCCGAGCAGTGGAAGCTAAATGCGGATGCAGATCGGTGCCGGCTGCAAAAAAAATCAAAAAGTTAGGGATATCAAATTTCTCGAAGCATAAGCTATTGTTGAAGGCTTGTATGATCTTTCGAGGAAATTAAATCAGGGTGGGGGTCGTATTGCTTACCCTTTAGTCGTGGAATCCGACTCCATAGAGGTTGTTAACCTTCTCAATCAGAAATCGAAGGATCTTTCTGAGGTTGCGGTAGTGATCGATGAAATTCAAGCTTTCGCGTCGTCGATCGAAGTCGTTTCTTTTTCCAAATGCTCCAGAGATAGCAAATTTTTGGCGCACAATCTTGCGCGCGCTGGTGCCATGTATGGGTCTTGCGATTTTTTTGTTGATCTTCCGCGTCCGTTTCTGAGGCCGGAAGTTTTGGGTAGGGATGATATCTTCCCGCCGTGGTTTTCCTCAGTTTTAGATGATGTTGTTAATGGTGTACCTAACTCTTTTAATTCTATTTAA

mRNA sequence

ATGTTTTCTCGGTGTGTAGGGATTGGTGCCGATCAAAAGACTTCTGGGCTGAAACTATTCAGAGCATTGACAAATCGGAGTGCAATTTGGCTGGACAAATCCTATGGGCTATTTGGAATATCAGAAATCAATGCAAAACAAATTATCAGTGATATTAGAAGCCTAACTGATGCGTTTGTGTTGAGAGAGTCAAACCTGAAGCCGAAAGAATCTAAGAACCAGGCGAGTCATGCGAGTTGGGATCCTCCGAATTCCGAGCAGTGGAAGCTAAATGCGGATGCAGATCGGAAATTAAATCAGGGTGGGGGTCGTATTGCTTACCCTTTAGTCGTGGAATCCGACTCCATAGAGGTTGTTAACCTTCTCAATCAGAAATCGAAGGATCTTTCTGAGGTTGCGGTAGTGATCGATGAAATTCAAGCTTTCGCGTCGTCGATCGAAGTCGTTTCTTTTTCCAAATGCTCCAGAGATAGCAAATTTTTGGCGCACAATCTTGCGCGCGCTGGTGCCATGTATGGGTCTTGCGATTTTTTTGTTGATCTTCCGCGTCCGTTTCTGAGGCCGGAAGTTTTGGGTAGGGATGATATCTTCCCGCCGTGGTTTTCCTCAGTTTTAGATGATGTTGTTAATGGTGTACCTAACTCTTTTAATTCTATTTAA

Coding sequence (CDS)

ATGTTTTCTCGGTGTGTAGGGATTGGTGCCGATCAAAAGACTTCTGGGCTGAAACTATTCAGAGCATTGACAAATCGGAGTGCAATTTGGCTGGACAAATCCTATGGGCTATTTGGAATATCAGAAATCAATGCAAAACAAATTATCAGTGATATTAGAAGCCTAACTGATGCGTTTGTGTTGAGAGAGTCAAACCTGAAGCCGAAAGAATCTAAGAACCAGGCGAGTCATGCGAGTTGGGATCCTCCGAATTCCGAGCAGTGGAAGCTAAATGCGGATGCAGATCGGAAATTAAATCAGGGTGGGGGTCGTATTGCTTACCCTTTAGTCGTGGAATCCGACTCCATAGAGGTTGTTAACCTTCTCAATCAGAAATCGAAGGATCTTTCTGAGGTTGCGGTAGTGATCGATGAAATTCAAGCTTTCGCGTCGTCGATCGAAGTCGTTTCTTTTTCCAAATGCTCCAGAGATAGCAAATTTTTGGCGCACAATCTTGCGCGCGCTGGTGCCATGTATGGGTCTTGCGATTTTTTTGTTGATCTTCCGCGTCCGTTTCTGAGGCCGGAAGTTTTGGGTAGGGATGATATCTTCCCGCCGTGGTTTTCCTCAGTTTTAGATGATGTTGTTAATGGTGTACCTAACTCTTTTAATTCTATTTAA

Protein sequence

MFSRCVGIGADQKTSGLKLFRALTNRSAIWLDKSYGLFGISEINAKQIISDIRSLTDAFVLRESNLKPKESKNQASHASWDPPNSEQWKLNADADRKLNQGGGRIAYPLVVESDSIEVVNLLNQKSKDLSEVAVVIDEIQAFASSIEVVSFSKCSRDSKFLAHNLARAGAMYGSCDFFVDLPRPFLRPEVLGRDDIFPPWFSSVLDDVVNGVPNSFNSI

Homology

[Close]

BLAST of Spg007145 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.7e-04
Identity = 45/175 (25.71%), Postives = 74/175 (42.29%), Query Frame = 0


Query: 51  DIRSLTDAFVL----RESNLKPKESKNQASH----------ASWDPPNSEQWKLNADADR 110
           DI+   D +++    R +NLK K S N+  H          A W PP S  WKLN +A  
Sbjct: 37  DIQLAIDRYIINSAGRNTNLKGK-STNKDLHLIRRIEDNTGAQWKPPTSNSWKLNTNAAW 96

Query: 111 KLNQGGGRIAY--------------------------------------------PLVVE 168
           + +   G I +                                            P+ +E
Sbjct: 97  RADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAICEGLRAIRQEHCRPIHLE 156

[Close]

BLAST of Spg007145 vs. ExPASy TrEMBL
Match: A0A445BA22 (RNase H domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g050689 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.7e-04
Identity = 42/149 (28.19%), Postives = 70/149 (46.98%), Query Frame = 0


Query: 27  SAIWLDKSYGLFGISEINAKQIISDIRSLTDAFV-LRESNLKPKESKNQ-ASHASWDPPN 86
           S+IW  K+  +F    ++    I+ IR+ ++ F  +  SNLKP   +    S  SW  P 
Sbjct: 211 SSIWYLKNKLVFNEKSVHVTTAINQIRARSEEFFRIARSNLKPHNIQTAGVSLISWSRPE 270

Query: 87  SEQWKLNAD----ADRKLNQGGGRIAYPLVVESDSIEVVNLLNQKSKDLSEVAVVIDEIQ 146
            +  K+NAD        LN         L+VESDS E +N +N+  +     A +I +I 
Sbjct: 271 EDCVKVNADELWAVIHGLNIATTNGYQNLIVESDSAEAINFINRGCRPAHPYAPLIQDIH 330

Query: 147 AFASSIEVVSFSKCSRDSKFLAHNLARAG 170
              + I+ +++    R + F+   LA+ G
Sbjct: 331 VLTTRIQKITWLHSLRKANFVTDLLAKKG 359

The following BLAST results are available for this feature:

BLAST of Spg007145 vs.


Match Name	E-value	Identity	Description

BLAST of Spg007145 vs.


Match Name	E-value	Identity	Description

BLAST of Spg007145 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CP26	9.7e-04	25.71	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A445BA22	9.7e-04	28.19	RNase H domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_A10g050689 ...	[more]

BLAST of Spg007145 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 108..168 e-value: 4.6E-8 score: 32.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg007145.1	Spg007145.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity