Spg007142 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg007142
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionUnknown protein
Locationscaffold9: 47063925 .. 47064365 (+)
RNA-Seq ExpressionSpg007142
SyntenySpg007142
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCCATCAACTGTTAAAAAACAAAAGAAAAAGATATTATCCGGCAGAGAAGCAGTTGAGCAGCTTCATCATTCCGGCCAGCCAAAAAAGAGAAAAGAAAAGAAAAAGATGAATGAATCATCTGAGCGTGGAAGTCAAGGACTGAAAGAAGTGTTCATCGCAAGGAATGGTGAGGCCCATGTCGTGATCGAAGCCGAATTCGTCGGCGGCTTGCTGGAGCAGGATTTGGAACTGCGGGTGAGTGAGAAATGTGATGGGGACAATGTATCTGGTTCGATTTTGGCCGACGTAGACGACGAAATGGCCCTTGGGGACGTCCAAAGGGAGGCCCTGCTCGTCGTAGTGCCTTCGGGCCAAGCTGGAGCAGCGCTTCAGCATCTGCTTCAGCACTGCGGGCTGTGGGATTTTGGTGGACTTTCTAATGGCCATGAGACTTGA

mRNA sequence

ATGTCTCCATCAACTGTTAAAAAACAAAAGAAAAAGATATTATCCGGCAGAGAAGCAGTTGAGCAGCTTCATCATTCCGGCCAGCCAAAAAAGAGAAAAGAAAAGAAAAAGATGAATGAATCATCTGAGCGTGGAAGTCAAGGACTGAAAGAAGTGTTCATCGCAAGGAATGGTGAGGCCCATGTCGTGATCGAAGCCGAATTCGTCGGCGGCTTGCTGGAGCAGGATTTGGAACTGCGGGTGAGTGAGAAATGTGATGGGGACAATGTATCTGGTTCGATTTTGGCCGACGTAGACGACGAAATGGCCCTTGGGGACGTCCAAAGGGAGGCCCTGCTCGTCGTAGTGCCTTCGGGCCAAGCTGGAGCAGCGCTTCAGCATCTGCTTCAGCACTGCGGGCTGTGGGATTTTGGTGGACTTTCTAATGGCCATGAGACTTGA

Coding sequence (CDS)

ATGTCTCCATCAACTGTTAAAAAACAAAAGAAAAAGATATTATCCGGCAGAGAAGCAGTTGAGCAGCTTCATCATTCCGGCCAGCCAAAAAAGAGAAAAGAAAAGAAAAAGATGAATGAATCATCTGAGCGTGGAAGTCAAGGACTGAAAGAAGTGTTCATCGCAAGGAATGGTGAGGCCCATGTCGTGATCGAAGCCGAATTCGTCGGCGGCTTGCTGGAGCAGGATTTGGAACTGCGGGTGAGTGAGAAATGTGATGGGGACAATGTATCTGGTTCGATTTTGGCCGACGTAGACGACGAAATGGCCCTTGGGGACGTCCAAAGGGAGGCCCTGCTCGTCGTAGTGCCTTCGGGCCAAGCTGGAGCAGCGCTTCAGCATCTGCTTCAGCACTGCGGGCTGTGGGATTTTGGTGGACTTTCTAATGGCCATGAGACTTGA

Protein sequence

MSPSTVKKQKKKILSGREAVEQLHHSGQPKKRKEKKKMNESSERGSQGLKEVFIARNGEAHVVIEAEFVGGLLEQDLELRVSEKCDGDNVSGSILADVDDEMALGDVQREALLVVVPSGQAGAALQHLLQHCGLWDFGGLSNGHET
Homology
BLAST of Spg007142 vs. NCBI nr
Match: CAG1843392.1 (unnamed protein product, partial [Musa acuminata subsp. malaccensis])

HSP 1 Score: 75.9 bits (185), Expect = 3.3e-10
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 0

Query: 41  SSERGSQGLKEVFIARNGEAHVVIEAEFVGGLLEQDLELRVSEKCDGDNVSGSILADVDD 100
           S ER  +G ++  +A +GEAHVV+EAE + GL E+ LEL V +  DG + +  + ADVDD
Sbjct: 1   SFERRGEGAEDGLVAGDGEAHVVVEAELLLGLAEEALELGVVQVGDGHDEAAPVRADVDD 60

Query: 101 EMALGDVQREALLVVVPSGQAGAALQHLLQHCGLWDFGGLSNGH 145
           E+ALG+V R       P  +A A LQHLLQ+  L     L + H
Sbjct: 61  EVALGNVHRRPF----PPPRARAPLQHLLQYLSLNQLALLLDHH 100

BLAST of Spg007142 vs. NCBI nr
Match: RRT62836.1 (hypothetical protein B296_00021467 [Ensete ventricosum])

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-07
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 0

Query: 41  SSERGSQGLKEVFIARNGEAHVVIEAEFVGGLLEQDLELRVSEKCDGDNVSGSILADVDD 100
           SSE G +G ++  +AR+GEAHVV+EAE + GL +Q LEL V E  DG +     LA V  
Sbjct: 11  SSEHGREGAEDDLLARDGEAHVVVEAELLLGLPQQALELGVGEVRDGHDEPAPALAHVHR 70

Query: 101 EMALGDVQREALLVVVPSGQAGAALQHLLQHCGL 135
           E+ALG V     L++ P  QA A LQ+LL   GL
Sbjct: 71  EVALGHVH---WLLLPP--QARAPLQYLLDARGL 99

BLAST of Spg007142 vs. NCBI nr
Match: CAG1843043.1 (unnamed protein product [Musa acuminata subsp. malaccensis])

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 53/129 (41.09%), Postives = 68/129 (52.71%), Query Frame = 0

Query: 20  VEQLHHSGQPKKRKEKKKMNE--------------SSERGSQGLKEVFIARNGEAHVVIE 79
           V+QL     P    +K   NE              SSE G +G ++  +AR+GEAHVV+E
Sbjct: 13  VKQLQSKEPPSMAAKKGPTNEGSYKWAAQAEAEAASSEHGGEGAEDDLLARDGEAHVVVE 72

Query: 80  AEFVGGLLEQDLELRVSEKCDGDNVSGSILADVDDEMALGDVQREALLVVVPSGQAGAAL 135
           AE + GL +Q LELRV E   G +     LA V  E+ALG V R   L++ P  QA A L
Sbjct: 73  AELLLGLPQQALELRVGEVRYGHDEPAPALAHVHREVALGHVHR---LLLPP--QARAPL 132

BLAST of Spg007142 vs. NCBI nr
Match: CAG1863181.1 (unnamed protein product, partial [Musa acuminata subsp. malaccensis])

HSP 1 Score: 63.5 bits (153), Expect = 1.7e-06
Identity = 45/122 (36.89%), Postives = 66/122 (54.10%), Query Frame = 0

Query: 30  KKRKEKKK-------MNESSERGSQGLKEVFIARNGEAHVVIEAEFVGGLLEQDLELRVS 89
           K++KE ++          S E G +G ++  +A +GE HVV+EAE + GL E+ LEL   
Sbjct: 33  KRKKEHQQSVVVLRPARRSPEHGGEGTEDDLLAGDGEPHVVVEAELLLGLAEEALELGPL 92

Query: 90  EKCDGDNVSGSILADVDDEMALGDVQREALLVVVPSGQAGAALQHLLQHCGLWDFGGLSN 145
           +  DG + +  +L  V  E+ALG V R+ L+  +   QA A LQHLL    L     L +
Sbjct: 93  QVGDGHDEAAPLLPHVHREVALGHVPRQLLVQALLPPQARAPLQHLLDGRRLRKLVALPD 152

BLAST of Spg007142 vs. NCBI nr
Match: KAG6413467.1 (hypothetical protein SASPL_126180 [Salvia splendens])

HSP 1 Score: 58.9 bits (141), Expect = 4.2e-05
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = 0

Query: 59  EAHVVIEAEFVGGLLEQDLELRVSEKCDGDNVSGSILADVDDEMALGDVQRE-ALLVVVP 118
           EAH+V E +F+ G  E+ LEL V +K DG++VS  ILA VD E+ LG V  E AL+V  P
Sbjct: 139 EAHLVPEPKFLLGSSEEALELGVGQKRDGNDVSRPILAHVDCEVPLGHVHGEPALVVYDP 198

Query: 119 SGQAGAALQHLLQH 132
             Q    LQ LLQH
Sbjct: 199 FTQTRTLLQDLLQH 212

BLAST of Spg007142 vs. ExPASy TrEMBL
Match: A0A426ZFU3 (Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00021467 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 45/94 (47.87%), Postives = 58/94 (61.70%), Query Frame = 0

Query: 41  SSERGSQGLKEVFIARNGEAHVVIEAEFVGGLLEQDLELRVSEKCDGDNVSGSILADVDD 100
           SSE G +G ++  +AR+GEAHVV+EAE + GL +Q LEL V E  DG +     LA V  
Sbjct: 11  SSEHGREGAEDDLLARDGEAHVVVEAELLLGLPQQALELGVGEVRDGHDEPAPALAHVHR 70

Query: 101 EMALGDVQREALLVVVPSGQAGAALQHLLQHCGL 135
           E+ALG V     L++ P  QA A LQ+LL   GL
Sbjct: 71  EVALGHVH---WLLLPP--QARAPLQYLLDARGL 99

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
CAG1843392.13.3e-1044.23unnamed protein product, partial [Musa acuminata subsp. malaccensis][more]
RRT62836.14.4e-0747.87hypothetical protein B296_00021467 [Ensete ventricosum][more]
CAG1843043.11.3e-0641.09unnamed protein product [Musa acuminata subsp. malaccensis][more]
CAG1863181.11.7e-0636.89unnamed protein product, partial [Musa acuminata subsp. malaccensis][more]
KAG6413467.14.2e-0551.35hypothetical protein SASPL_126180 [Salvia splendens][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A426ZFU32.2e-0747.87Uncharacterized protein OS=Ensete ventricosum OX=4639 GN=B296_00021467 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..47
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 11..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg007142.1Spg007142.1mRNA