Spg007068 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg007068
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	homeobox-leucine zipper protein HOX11-like
Location	scaffold9: 48144537 .. 48145487 (-)
RNA-Seq Expression	Spg007068
Synteny	Spg007068

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGCCGGCGACCGACGACGGTGGTGCTGATGGCGGCCGACGACCGGACTGGAAGAAGAAGAAGACTGGTAGAAGAAGAAAGAAAGTAAGATGAAAGGTGATGAAGGACAAATATAATAAAATAATTATTTTTTTATTAATTTAATATTGTTTTTATTTTAAAAATTCAAAAAATATATATTTTTTAAATAAAAAATAGGTGCCACCGTTAGTTTTTAACTGAAAAATGGATAGAGGGACTAAATTGAAACTAAAACCAAACCTCAGGGACTAAATTGTTGAGTTTGAAAACTCAGGGACCAAAATGAAACCTAACCCAAACCTCAGGGACCAAAAGTGTATTTTTCTCTTAAAAATATTATTATTTTTATTTCTTTTTATTACTTCTCTCTTCCTCCTCATTCTTCTTGTACCACTTCATCATCTTCAACACACATTCATCCATGGTCGGCGCCCGACGACCACCGCTCGCCGGCCGCCGCCGCCGCCGGTCACTTTTTTTTTTTTTTTCTTCTCTTCTTCGTTGCAAGGTTCTGCGTCGACCTATAGATCGGCCGTCCAGTTGCCGGAGAGAAAGAAGACGACGACGAAGAAAAACCTAATCAGAGAGAAGACGAATCCGACGGAAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCACAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCAGGTCGTCGTCCGAAAACGGTAAGATTCTCGAAAGTTCAAAACCCTAACTGTAACCAACTCCGAAATCACAAAATCATTTCCCCTAATTTTTCTAACCGAAATCGGTTATTTTCAGATGAGGGCGAAGACCGAGCCGCATCGCCGAACAGCGCTGCATCGTTGTTTCAGATGGAATTTGGACTGTACGGCCGCTGAGGGAACATTTCTTGCCGGAGAGATCAAATGGAAAATGGCGTAA

mRNA sequence

ATGACGCCGGCGACCGACGACGGTGGTGCTGATGGCGGCCGACGACCGGACTGGAAGAAGAAGAAGACTGGTAGAAGAAGAAAGAAAATCGGCCGTCCAGTTGCCGGAGAGAAAGAAGACGACGACGAAGAAAAACCTAATCAGAGAGAAGACGAATCCGACGGAAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCACAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCAGGTCGTCGTCCGAAAACGATGAGGGCGAAGACCGAGCCGCATCGCCGAACAGCGCTGCATCGTTGTTTCAGATGGAATTTGGACTGTACGGCCGCTGAGGGAACATTTCTTGCCGGAGAGATCAAATGGAAAATGGCGTAA

Coding sequence (CDS)

ATGACGCCGGCGACCGACGACGGTGGTGCTGATGGCGGCCGACGACCGGACTGGAAGAAGAAGAAGACTGGTAGAAGAAGAAAGAAAATCGGCCGTCCAGTTGCCGGAGAGAAAGAAGACGACGACGAAGAAAAACCTAATCAGAGAGAAGACGAATCCGACGGAAATGAAGATCCACCGATTCAACTCGATCTTCTCCCTCACAATCCCGTTCCTCGAAACCTAACTAATCCGTACCAAGGATTCCCAGGTCGTCGTCCGAAAACGATGAGGGCGAAGACCGAGCCGCATCGCCGAACAGCGCTGCATCGTTGTTTCAGATGGAATTTGGACTGTACGGCCGCTGAGGGAACATTTCTTGCCGGAGAGATCAAATGGAAAATGGCGTAA

Protein sequence

MTPATDDGGADGGRRPDWKKKKTGRRRKKIGRPVAGEKEDDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFPGRRPKTMRAKTEPHRRTALHRCFRWNLDCTAAEGTFLAGEIKWKMA

Homology

[Close]

BLAST of Spg007068 vs. NCBI nr
Match: XP_038896826.1 (homeobox-leucine zipper protein HOX11-like [Benincasa hispida])

HSP 1 Score: 97.1 bits (240), Expect = 1.2e-16
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 30 IGRPVAGEKEDDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 84
          IGRPVAGEKE  DE+K NQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP
Sbjct: 43 IGRPVAGEKE-GDEDKLNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 95

[Close]

BLAST of Spg007068 vs. NCBI nr
Match: XP_022954327.1 (homeobox-leucine zipper protein HOX11-like [Cucurbita moschata])

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-16
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 30 IGRPVAGEKEDDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 84
          IGRPVAGEKE DDEEK NQR+ ESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP
Sbjct: 43 IGRPVAGEKE-DDEEKINQRDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 95

[Close]

BLAST of Spg007068 vs. NCBI nr
Match: XP_008461247.1 (PREDICTED: homeobox-leucine zipper protein HOX11-like [Cucumis melo] >KAA0058662.1 homeobox-leucine zipper protein HOX11-like [Cucumis melo var. makuwa] >TYK10469.1 homeobox-leucine zipper protein HOX11-like [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-16
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 30 IGRPVAGEKEDDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 84
          IGR VAG+KE DDE+KPNQ EDESDGNEDPP+QLDLLPHNPVPRNLTNPYQGFP
Sbjct: 43 IGRSVAGDKE-DDEDKPNQGEDESDGNEDPPVQLDLLPHNPVPRNLTNPYQGFP 95

[Close]

BLAST of Spg007068 vs. NCBI nr
Match: XP_022991918.1 (homeobox-leucine zipper protein HOX11-like [Cucurbita maxima])

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-16
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 30 IGRPVAGEKEDDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 84
          IGRPVAGEKE DDEEK NQR+ ESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP
Sbjct: 43 IGRPVAGEKE-DDEEKINQRDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 95

[Close]

BLAST of Spg007068 vs. NCBI nr
Match: KAG6575663.1 (Homeobox-leucine zipper protein HAT14, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014215.1 Homeobox-leucine zipper protein HAT14, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 96.3 bits (238), Expect = 2.1e-16
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 30 IGRPVAGEKEDDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 84
          IGRPVAGEKE DDEEK NQR+ ESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP
Sbjct: 43 IGRPVAGEKE-DDEEKINQRDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 95

[Close]

BLAST of Spg007068 vs. ExPASy TrEMBL
Match: A0A5D3CJS2 (Homeobox-leucine zipper protein HOX11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G001180 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 30 IGRPVAGEKEDDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 84
          IGR VAG+KE DDE+KPNQ EDESDGNEDPP+QLDLLPHNPVPRNLTNPYQGFP
Sbjct: 43 IGRSVAGDKE-DDEDKPNQGEDESDGNEDPPVQLDLLPHNPVPRNLTNPYQGFP 95

[Close]

BLAST of Spg007068 vs. ExPASy TrEMBL
Match: A0A6J1JXM6 (homeobox-leucine zipper protein HOX11-like OS=Cucurbita maxima OX=3661 GN=LOC111488413 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 30 IGRPVAGEKEDDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 84
          IGRPVAGEKE DDEEK NQR+ ESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP
Sbjct: 43 IGRPVAGEKE-DDEEKINQRDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 95

[Close]

BLAST of Spg007068 vs. ExPASy TrEMBL
Match: A0A6J1GQQ3 (homeobox-leucine zipper protein HOX11-like OS=Cucurbita moschata OX=3662 GN=LOC111456605 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 30 IGRPVAGEKEDDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 84
          IGRPVAGEKE DDEEK NQR+ ESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP
Sbjct: 43 IGRPVAGEKE-DDEEKINQRDYESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 95

[Close]

BLAST of Spg007068 vs. ExPASy TrEMBL
Match: A0A1S3CEP0 (homeobox-leucine zipper protein HOX11-like OS=Cucumis melo OX=3656 GN=LOC103499889 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.0e-16
Identity = 48/54 (88.89%), Postives = 51/54 (94.44%), Query Frame = 0


Query: 30 IGRPVAGEKEDDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 84
          IGR VAG+KE DDE+KPNQ EDESDGNEDPP+QLDLLPHNPVPRNLTNPYQGFP
Sbjct: 43 IGRSVAGDKE-DDEDKPNQGEDESDGNEDPPVQLDLLPHNPVPRNLTNPYQGFP 95

[Close]

BLAST of Spg007068 vs. ExPASy TrEMBL
Match: A0A0A0KBJ3 (Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G429520 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.9e-16
Identity = 48/54 (88.89%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 30 IGRPVAGEKEDDDEEKPNQREDESDGNEDPPIQLDLLPHNPVPRNLTNPYQGFP 84
          IGR VAG+KE DDE+KPNQ EDESDGNEDPP QLDLLPHNPVPRNLTNPYQGFP
Sbjct: 43 IGRSVAGDKE-DDEDKPNQGEDESDGNEDPPTQLDLLPHNPVPRNLTNPYQGFP 95

The following BLAST results are available for this feature:

BLAST of Spg007068 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038896826.1	1.2e-16	92.59	homeobox-leucine zipper protein HOX11-like [Benincasa hispida]	[more]
XP_022954327.1	2.1e-16	92.59	homeobox-leucine zipper protein HOX11-like [Cucurbita moschata]	[more]
XP_008461247.1	2.1e-16	88.89	PREDICTED: homeobox-leucine zipper protein HOX11-like [Cucumis melo] >KAA0058662...	[more]
XP_022991918.1	2.1e-16	92.59	homeobox-leucine zipper protein HOX11-like [Cucurbita maxima]	[more]
KAG6575663.1	2.1e-16	92.59	Homeobox-leucine zipper protein HAT14, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Spg007068 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg007068 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CJS2	1.0e-16	88.89	Homeobox-leucine zipper protein HOX11-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6J1JXM6	1.0e-16	92.59	homeobox-leucine zipper protein HOX11-like OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GQQ3	1.0e-16	92.59	homeobox-leucine zipper protein HOX11-like OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A1S3CEP0	1.0e-16	88.89	homeobox-leucine zipper protein HOX11-like OS=Cucumis melo OX=3656 GN=LOC1034998...	[more]
A0A0A0KBJ3	2.9e-16	88.89	Homeobox domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G429520 PE...	[more]

BLAST of Spg007068 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg007068.1	Spg007068.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific
molecular_function	GO:0043565	sequence-specific DNA binding