Spg007032 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg007032
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111024115
Locationscaffold9: 47806478 .. 47811425 (-)
RNA-Seq ExpressionSpg007032
SyntenySpg007032
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAGAGGCACAACAAGGAACCATGGAAAGAATGATTCGTGGTATAGAAGAGTTGTCCGAACGCATGGGAAGGTTGGAGGCTCAGTACCAACCTCGTGAGAGAGTTCCACCACCACGTATTGACAATGATCGAGAGGATGACTATGAGGATGATGGTTCCGATCAACCAGATGATGACCAAGTTACCTTGGTAGCGGTTCCAAGAGGAAGACAAAGACGTGCTGGTCGTGGCATGGAAAGAGGGCGAGGTCGTGGACGAGGACATCATATTTTCCAACAACGAGTTCCTCAATATGAGGGAGTTGATCGAAATGTGGGTAACATCAAATTGAAGCTTCCAAAGTTCTATGGCAAAACCGATCCGGAGGAATACCTTGAATGGGAGAAGTCAGTGGAGTCCGTATTCAATTGCCATAATTTCAGTGATGAAAAGAAGGTAATATTATGTGTTGCTCAATTTAAACAATATGCTCAAACATGGTGGGATAAGTTGATGTCAAGTAGGAGAAGAAATCTTGAGGCACCGATCGATGATTGGTACGAGTTCAAGGAGGCCATGAGGAAGCGTTTTGTTCCAAAACATTTTCAACGGGACATGGCGCAAAAGCTTCAAGCATTGAAACAAGGAAGTAAGTCCGTGGAGGATTATTACAAGGAGATGGATACGTTGATGGATCGACTTGATATAGATGAAGACATGGAGAATCTCATGGCACGGTTTCTTAATGGGCTAAACACGGAGATTGCGGACAAGGTTGATCTACAACCTTATTTTGACATGGAAGAGATGCTGCATATTGCAATCAAAATTGAGAGGCAACTCCAACGAAAGTCACGACGGTATTCTTCTAAACACTTTTCCAACTCTAGCTCATCATGGAAAAGGGATAGTAAGAGTATTGATTATAAGCCTAGAAATCGAGAGGGGTATGAGAAACCTAAAGAGAAGTTTGAAAAGGGGGAGAGTTCCAAGAAGGGGAAAGAGAAGGTAGATGAATCTAATGTGCGAAATAGGGATTTGAAGTGCTGGAAATGTCAAGGGGTAGGTCATTATAGTAGAGATTGCCCAAATAGGAGAACGATGATCCTTCGAGAGGGAGAGTTTGTGACGGAGGATGAAGAGGAAGATGAGGTCATAGAGGAAGGAAAAGTAGAGTGTGAAAGTGATGAGTTTAGTGAAGAGGATCCTACTTATATGTCCTTAGTCACTAGGAGAGCTTTAAACACCCAAATTAAGGAGGATAGTCTAGACCAACGGGAGAACTTATTTCACACTAGGTGTCTTGTTCAATCTGTACCTTGTAGTGTGGTTATCGATAGTGGTAGTTGTACCAATGTTGTGAGTTCCATTCTGGTCAAGAGACTTAATTTAGAAACCAAACCCCATCCTAAACCATATAGGCTTCAATGGTTGAATGATTGTGGGGAGGTAAGGGTAAGTAGGCAAGCTCTTGTTTCTTTTACCATTGGGAAGTATGCTGATGATGTTTTGTGTGATGTTGTATCCATGCATGCTGGGGATTTATTGTTGGGGAGACCTTGGCAATTTGATCGTCGGGTAGTCTATGATGGGTATGCTAATCGTTACTCTTTTACTCATAATGGGAGAAAAACTACTCTTGTACCTTTGTCTCCAACAGACGTGTATATTGATCAATGTAAACTTGAAAAGAAAAGGCAAGAGGTCGATGCAAAAGCAAAAGGTTCAAAAGAAATGAAAGAAAAAGAATTGAGAGAAAAAAAAGAGTTGAGTGAAAAGCAAGTGACTAGCAATCGGCCTAGAGAGAAAAATGAGAGAAAAGCCAAAATAGTGAGCTTGTATGTTAGATCAAGTGAGGCTAGGAATGTTTTGCTCTCTAACCGGACCATTCTTGTACTTTTGTACAAAGGGTCTTGTTTTCTTACTAACGAGCTTAACCCTTCTTTGCCTAGTGTTTTTGTTACACTTTTGCAGGAGTTTGAAGATTTATTTCCCGAGGAGATGCCAAGTGGTTTGCCACCACTTAGAGGAATTGAGCACAAGATTGACTTCATTCCGGGAGCGACCATTCCAAATCGTCCAGCATATAGGACTAATCCAAAGGAAGACTTGGAAATGTAGTAAAATAAGCCTTTGAGCTTTTCCTTTAGCCTAGAGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGCTGAGAATCATTCAAGCTTGACTTGATCAATCATGCTTGTGGAGTGATTCGAATCTCAAGCAAGTTTCTTGCCTTGAGATATTTGATCGACAAGGTAATCCGGTTTTTACTTTCCTTGGGTTGATTTTCAAATCGGTTTTGGGGTTTTCAGATTTGAGATCTAAAGGTCTTGTTTTTCAGCAAGGTTGTTAGATCCATCTCTTGGAAGTTTCATAACATTTGGTATCAGAGCTTTAGGCTCAAGATCGGATATATGTTTCCTTTGCGTTTCTCTTGAATTTGTTTTTTCTTTCTTTGGTTTTTTTTAATCTGTCCAGTTTCGTAGTCTGCCTAAATGCTCCAAAAACTCATATTTCCGAAGGGTATTTCATCTTAATGTCTTCTATGATATTGTAGATCTTTGTTTAAGCTACAACTTTGCCTTCTTCATGGATTTCTAATTCAAATGTCTTGAGGGTGAAACGTCTGAAGTTTTGAAATCTGTTCTGGAAAAACTGCTATACCCGAGAATGTGTGTTCTTGTTTTGTTCTTGTCATTTTTGCCTCCAAAGCCTTATAGATCCGAATTGCATTGCTATAAATTCATCAATTGTGTTTTAATATGGCTTTTCACTTGCTGATTATATCAGTTACACATTCAATTTAAGCAAGAGTTGGCTGTTATGCATTAAATATGGACAGTTACATTTCTGCTCATTGAATTTTCCAGCCATTAGTTTCAGATTGTAACTCCTTTGTTTAAAGTCTAGCCAATGGTCTTAAATTCGGTCTTCCACTTTCCAAAGTGTTATAAATCACCTTCAGCACCATACACTTGTATTCAATATTAACAGAATTCCATCCTCCATATTCTCACATTCTGTCCATTTATTTCTCTCATTTCATAATTTTAATTTGGAATCCTTCTTAGAGGTTTAGCTTGTTTGATATATGCTTTCAATTACAAGAATTGCAAATTATCTTGGCTTTTCCACTTCCAATATTGAGAGATGAGAATGCGAGTTCATACCGAGTGATTTGTGAAAATGAGTGCAAACACAAGTGGCCCAAATTTCCATGAGTGTGAACAACGTAAGAGAGTGTTGTGAGGTTCTTTGTGTTTTCTTAAAGTGTTTTTGCAGCAATGATTCACAAAACAAAATTCGAGGACGAATTCTCTTGAAGAAGGGGAGGATGATATGAATCCTACCATACTATCCAAAACTAAAGAAAAGCTTCAAAATGGAGATTCATTAAATGCACTCAAGCTTCATTGAAGACAAGTCAAAGTGTCATTTATGGAACATGGACTTCAAGATACTTCAAGTGAGGTTTCAAGCATGGGAGGTTACAAATATTAATTGGCTGATTGCAAACTCCTATTCACGGATTTATGGTTCCTTTTGAATGTATTTTCAGTTTTACGTCATTTTATTTACTTTTTAGGTTACATTTAGTTAATGGCTGATTATGGTCATAAAGTTGGAATGTTACAACTCTTGAAATGCCTCATGGAAGGTCTAGGGTTTCAATTTCAAGGCTATATAATGCCATGTGATTCCTTTGTAAAAAAAAAGGAAGACTTGGAAATGTAGTAAAATAAGCCTTTGAGCTTTTCCTTTAGCCTAGAGCTAAGTTTCTTTGCAATTCTATGTAGTTTAGGTTGCATGCTGAGAATCATTCAAGCTTGACTTGATCAATCATGCTTGTGGAGTGATTCGAATCTCAAGCAAGTTTCTTGCCTTGAGATATTTGATCGACAAGGTAATCCGGTTTTTACTTTCCTTGGGTTGATTTTCAAATCGGTTTTGGGGTTTTCAGATTTGAGATCTAAAGGTCTTGTTTTTCAGCAAGGTTGTTAGATCCATCTCTTGGAAGTTTCATAACACATAAAATTAAAAATTTAAGACATGTTTGACGTTTTTAAAGTTCATAAATCTATTAAATATAAAATTAAAAGTTTAGATACGTATTAAATACCTTTTAAACTAATATATATATCTATCTATCTAACTATCTATATAATCTGAGCATAATTCAACTAACATAAAAATTGTCTTAATGACCTAGAGGGGTATATGTAGTCAAAACACAAATAAATAACATAGAAACTTTCACATAACTTGGAATTTAAAATTGGTTAAAATTCACTTTTGGGTCCTTGAACTTTCACAAAAGTAACAATTTAGTCCTTGAATTTTGATTTGTAACGATTTACTCCCTGTACTTTCAATTTTGTAACGATTTAGTCTCTATCGTGAAATTTAATGTAAAGAATTAATGAAATTTGATACATAGATAGATTAATAAACTAATTTGGGACCCAATATATTTATAAACTACAAACATCGTTAAATAATAAAAATTGACATTTAATTTTGATGATTTTTTTTTTAACAAAGACTAAATTGTTACAAATTCGAAAGTATAAGAACTAAATTGTTACAAATTTGAAAATATAGGAACTAAATTGTTATAAATTTAAAAGTACATAGACTAAATCGATACAAATCAAAGTTTATTAAATTGTTATTTTCACGAAAGTTGGAGGACGAAAAGTGATTTTTAACCTTTAAAATTTTTAATCTTAAGTCGTGTAAATTGTAATTAGGTCATCCATGGCGCTCAAATTGCTTTCCTAGCGCCAAAATTCACCGATTCCCTTTTCAAAATTTGCGTCATTGCCGTGATGAGCCTTTTCACCGGTGCTTTTGATCTCCGTTCACTTTACTGTCCGATCATGACGATCATCGAACGGATAAACTTGATACCATCAGAACAGGCAGCATGA

mRNA sequence

ATGAGAGAGGCACAACAAGGAACCATGGAAAGAATGATTCGTGGTATAGAAGAGTTGTCCGAACGCATGGGAAGGTTGGAGGCTCAGTACCAACCTCGTGAGAGAGTTCCACCACCACGTATTGACAATGATCGAGAGGATGACTATGAGGATGATGGTTCCGATCAACCAGATGATGACCAAGTTACCTTGGTAGCGGTTCCAAGAGGAAGACAAAGACAATCATTCAAGCTTGACTTGATCAATCATGCTTGTGGAGTGATTCGAATCTCAAGCAAGTTTCTTGCCTTGAGATATTTGATCGACAAGCTTGACTTGATCAATCATGCTTGTGGAGTGATTCGAATCTCAAGCAAGTTTCTTGCCTTGAGATATTTGATCGACAAGGTCATCCATGGCGCTCAAATTGCTTTCCTAGCGCCAAAATTCACCGATTCCCTTTTCAAAATTTGCGTCATTGCCGTGATGAGCCTTTTCACCGGTGCTTTTGATCTCCGTTCACTTTACTGTCCGATCATGACGATCATCGAACGGATAAACTTGATACCATCAGAACAGGCAGCATGA

Coding sequence (CDS)

ATGAGAGAGGCACAACAAGGAACCATGGAAAGAATGATTCGTGGTATAGAAGAGTTGTCCGAACGCATGGGAAGGTTGGAGGCTCAGTACCAACCTCGTGAGAGAGTTCCACCACCACGTATTGACAATGATCGAGAGGATGACTATGAGGATGATGGTTCCGATCAACCAGATGATGACCAAGTTACCTTGGTAGCGGTTCCAAGAGGAAGACAAAGACAATCATTCAAGCTTGACTTGATCAATCATGCTTGTGGAGTGATTCGAATCTCAAGCAAGTTTCTTGCCTTGAGATATTTGATCGACAAGCTTGACTTGATCAATCATGCTTGTGGAGTGATTCGAATCTCAAGCAAGTTTCTTGCCTTGAGATATTTGATCGACAAGGTCATCCATGGCGCTCAAATTGCTTTCCTAGCGCCAAAATTCACCGATTCCCTTTTCAAAATTTGCGTCATTGCCGTGATGAGCCTTTTCACCGGTGCTTTTGATCTCCGTTCACTTTACTGTCCGATCATGACGATCATCGAACGGATAAACTTGATACCATCAGAACAGGCAGCATGA

Protein sequence

MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDDQVTLVAVPRGRQRQSFKLDLINHACGVIRISSKFLALRYLIDKLDLINHACGVIRISSKFLALRYLIDKVIHGAQIAFLAPKFTDSLFKICVIAVMSLFTGAFDLRSLYCPIMTIIERINLIPSEQAA
Homology
[Close]
BLAST of Spg007032 vs. NCBI nr
Match: XP_022157414.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 2  REAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDR-EDDYEDDGSDQPDDD 61
          REA +GT+ERMIR +E L+ER+GRLE Q Q   RVPPP       ED+YE DGSD  +DD
Sbjct: 16 REALEGTVERMIRSMEALTERIGRLETQNQAEGRVPPPPXXRVMDEDEYEGDGSDHWEDD 75

Query: 62 QVTLVAVPRG 71
          Q T++A PRG
Sbjct: 76 QATVLAXPRG 85

[Close]
BLAST of Spg007032 vs. NCBI nr
Match: KAA0043652.1 (uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 59.3 bits (142), Expect = 4.1e-05
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 0 

Query: 1  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVP----PPRIDNDREDDYEDDGSDQ 60
          +REAQQG + RMI  +E L++R+ R E + + RER+P    PP + N  ++  E DGSD 
Sbjct: 10 LREAQQGVIARMISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDD 69

Query: 61 PDDDQVTLVAVPR 70
           DDDQVTL+  PR
Sbjct: 70 LDDDQVTLLGEPR 82

[Close]
BLAST of Spg007032 vs. NCBI nr
Match: XP_022971169.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111469948, partial [Cucurbita maxima])

HSP 1 Score: 58.5 bits (140), Expect = 7.0e-05
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0 

Query: 1  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDD 60
          +REAQQ TMER+IRGIEEL++R+GRLE Q Q R+R+P P       D YE D SD  +D+
Sbjct: 15 LREAQQRTMERLIRGIEELTDRIGRLEIQNQARQRIPLP---TPSTDTYEGDNSDHHEDN 74

Query: 61 -QVTLVAVPRGRQRQS 76
           QV  +   R R  ++
Sbjct: 75 PQVNKLMSSRRRNLEA 87

[Close]
BLAST of Spg007032 vs. NCBI nr
Match: XP_023520282.1 (uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-04
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 1  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDD 60
          +REAQQ TMER+IRGIEEL++R+GRLE Q Q R+R+P P       D YE D SD  +D+
Sbjct: 15 LREAQQRTMERLIRGIEELTDRIGRLEIQNQARQRIPQP---TPSTDTYEGDNSDHHEDN 71

[Close]
BLAST of Spg007032 vs. NCBI nr
Match: XP_023520835.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.4 bits (137), Expect = 1.6e-04
Identity = 34/60 (56.67%), Postives = 43/60 (71.67%), Query Frame = 0 

Query: 1  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDD 60
          +REAQQ TMER+IRGIEEL++R+GRLE Q Q R+R+P P       D YE D SD  +D+
Sbjct: 15 LREAQQRTMERLIRGIEELTDRIGRLEIQNQARQRIPQP---TPSTDTYEGDNSDHHEDN 71

[Close]
BLAST of Spg007032 vs. ExPASy TrEMBL
Match: A0A6J1DWE9 (LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia OX=3673 GN=LOC111024115 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 8.6e-09
Identity = 41/70 (58.57%), Postives = 50/70 (71.43%), Query Frame = 0 

Query: 2  REAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDR-EDDYEDDGSDQPDDD 61
          REA +GT+ERMIR +E L+ER+GRLE Q Q   RVPPP       ED+YE DGSD  +DD
Sbjct: 16 REALEGTVERMIRSMEALTERIGRLETQNQAEGRVPPPPXXRVMDEDEYEGDGSDHWEDD 75

Query: 62 QVTLVAVPRG 71
          Q T++A PRG
Sbjct: 76 QATVLAXPRG 85

[Close]
BLAST of Spg007032 vs. ExPASy TrEMBL
Match: A0A5A7TK52 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G001000 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.0e-05
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 0 

Query: 1  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVP----PPRIDNDREDDYEDDGSDQ 60
          +REAQQG + RMI  +E L++R+ R E + + RER+P    PP + N  ++  E DGSD 
Sbjct: 10 LREAQQGVIARMISNMEALTDRLERFEIENRARERMPPPLAPPMLINHNDNQDEGDGSDD 69

Query: 61 PDDDQVTLVAVPR 70
           DDDQVTL+  PR
Sbjct: 70 LDDDQVTLLGEPR 82

[Close]
BLAST of Spg007032 vs. ExPASy TrEMBL
Match: A0A6J1I7T3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111469948 OS=Cucurbita maxima OX=3661 GN=LOC111469948 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.4e-05
Identity = 38/76 (50.00%), Postives = 50/76 (65.79%), Query Frame = 0 

Query: 1  MREAQQGTMERMIRGIEELSERMGRLEAQYQPRERVPPPRIDNDREDDYEDDGSDQPDDD 60
          +REAQQ TMER+IRGIEEL++R+GRLE Q Q R+R+P P       D YE D SD  +D+
Sbjct: 15 LREAQQRTMERLIRGIEELTDRIGRLEIQNQARQRIPLP---TPSTDTYEGDNSDHHEDN 74

Query: 61 -QVTLVAVPRGRQRQS 76
           QV  +   R R  ++
Sbjct: 75 PQVNKLMSSRRRNLEA 87

The following BLAST results are available for this feature:
BLAST of Spg007032 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022157414.11.8e-0858.57LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 [Momordica charantia][more]
KAA0043652.14.1e-0547.95uncharacterized protein E6C27_scaffold320G001000 [Cucumis melo var. makuwa][more]
XP_022971169.17.0e-0550.00LOW QUALITY PROTEIN: uncharacterized protein LOC111469948, partial [Cucurbita ma... [more]
XP_023520282.11.6e-0456.67uncharacterized protein LOC111783592 [Cucurbita pepo subsp. pepo][more]
XP_023520835.11.6e-0456.67LOW QUALITY PROTEIN: uncharacterized protein LOC111784339 [Cucurbita pepo subsp.... [more]
BLAST of Spg007032 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg007032 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1DWE98.6e-0958.57LOW QUALITY PROTEIN: uncharacterized protein LOC111024115 OS=Momordica charantia... [more]
A0A5A7TK522.0e-0547.95Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A6J1I7T33.4e-0550.00LOW QUALITY PROTEIN: uncharacterized protein LOC111469948 OS=Cucurbita maxima OX... [more]
BLAST of Spg007032 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 9..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..61

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg007032.1Spg007032.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005488 binding