Spg006954 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg006954
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionMediator of RNA polymerase II transcription subunit
Locationscaffold10: 38010742 .. 38011197 (-)
RNA-Seq ExpressionSpg006954
SyntenySpg006954
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATCCGTAAATTGCCTCCTCTCAGTCTCCAATTCCGCTCCCTTCCTCCCCCCTCCGATCTCGCCTTCCGCCTCCCGCCGTCGCTGTCGCACCGCCGTGACTGTTACGGCGTCGTCTCGATCGAGAGAGGCCGACAACAACAATTACTACGCCAGCGGAAAGCTCGTCGACGAGAGCATGATCGTGCTCCGGAAGCGGATCCACGAGATCAAGATGGCCGAGCAGAGCCACGATCCGCCGGCGGATTGGCTCGAGTGGGAGAAACGCTGCTATTCGGACTACGACTCGCACATCTGTGAAGCCCTTGGCTACCTTCAGTCGCACTTGATGAACACCAGGCCCAGCGTCGCCTTGGGAATGCTCGTTCTCGTTTCTCTCAGTGTTCCGGTCTCCTCCGCCGTCGTTCTCCACCGCTTGATCGAGATCGCCGCCGCGCTTCTCCGTCTCTGTTAG

mRNA sequence

ATGAAATCCGTAAATTGCCTCCTCTCAGTCTCCAATTCCGCTCCCTTCCTCCCCCCTCCGATCTCGCCTTCCGCCTCCCGCCGTCGCTGTCGCACCGCCGTGACTGTTACGGCGTCGTCTCGATCGAGAGAGGCCGACAACAACAATTACTACGCCAGCGGAAAGCTCGTCGACGAGAGCATGATCGTGCTCCGGAAGCGGATCCACGAGATCAAGATGGCCGAGCAGAGCCACGATCCGCCGGCGGATTGGCTCGAGTGGGAGAAACGCTGCTATTCGGACTACGACTCGCACATCTGTGAAGCCCTTGGCTACCTTCAGTCGCACTTGATGAACACCAGGCCCAGCGTCGCCTTGGGAATGCTCGTTCTCGTTTCTCTCAGTGTTCCGGTCTCCTCCGCCGTCGTTCTCCACCGCTTGATCGAGATCGCCGCCGCGCTTCTCCGTCTCTGTTAG

Coding sequence (CDS)

ATGAAATCCGTAAATTGCCTCCTCTCAGTCTCCAATTCCGCTCCCTTCCTCCCCCCTCCGATCTCGCCTTCCGCCTCCCGCCGTCGCTGTCGCACCGCCGTGACTGTTACGGCGTCGTCTCGATCGAGAGAGGCCGACAACAACAATTACTACGCCAGCGGAAAGCTCGTCGACGAGAGCATGATCGTGCTCCGGAAGCGGATCCACGAGATCAAGATGGCCGAGCAGAGCCACGATCCGCCGGCGGATTGGCTCGAGTGGGAGAAACGCTGCTATTCGGACTACGACTCGCACATCTGTGAAGCCCTTGGCTACCTTCAGTCGCACTTGATGAACACCAGGCCCAGCGTCGCCTTGGGAATGCTCGTTCTCGTTTCTCTCAGTGTTCCGGTCTCCTCCGCCGTCGTTCTCCACCGCTTGATCGAGATCGCCGCCGCGCTTCTCCGTCTCTGTTAG

Protein sequence

MKSVNCLLSVSNSAPFLPPPISPSASRRRCRTAVTVTASSRSREADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALLRLC
Homology
BLAST of Spg006954 vs. NCBI nr
Match: KAG7032552.1 (hypothetical protein SDJN02_06601, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 215.7 bits (548), Expect = 2.7e-52
Identity = 122/159 (76.73%), Postives = 134/159 (84.28%), Query Frame = 0

Query: 1   MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR--TAVTVTASSRSRE-ADNNNYYASGK 60
           M SVN LLS+  ++SAP L PPISPSA RRR R   A TVTASSR +E AD+N+YYA GK
Sbjct: 1   MNSVNSLLSIPSTHSAPVLFPPISPSADRRRRRRPPAFTVTASSRPKEQADSNSYYADGK 60

Query: 61  LVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRP 120
           LVDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+YDS+ICEALGYLQSHLMNTRP
Sbjct: 61  LVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRP 120

Query: 121 SVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC 152
           SVALGML L++LSVPVSSAVVLHR IEIA  LL   RLC
Sbjct: 121 SVALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAGIRLC 159

BLAST of Spg006954 vs. NCBI nr
Match: KAG6601844.1 (hypothetical protein SDJN03_07077, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 214.9 bits (546), Expect = 4.7e-52
Identity = 121/160 (75.62%), Postives = 134/160 (83.75%), Query Frame = 0

Query: 1   MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR---TAVTVTASSRSRE-ADNNNYYASG 60
           M S+N LLS+  ++SAP L PPISPSA RRR R    A TVTASSR +E AD+N+YYA G
Sbjct: 1   MNSINSLLSIPSTHSAPVLFPPISPSADRRRRRRRPPAFTVTASSRPKEQADSNSYYADG 60

Query: 61  KLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTR 120
           KLVDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+YDS+ICEALGYLQSHLMNTR
Sbjct: 61  KLVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTR 120

Query: 121 PSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC 152
           PSVALGML L++LSVPVSSAVVLHR IEIA  LL   RLC
Sbjct: 121 PSVALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAGIRLC 160

BLAST of Spg006954 vs. NCBI nr
Match: XP_023553368.1 (uncharacterized protein LOC111810800 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 214.2 bits (544), Expect = 8.0e-52
Identity = 120/159 (75.47%), Postives = 134/159 (84.28%), Query Frame = 0

Query: 1   MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR--TAVTVTASSRSRE-ADNNNYYASGK 60
           M S+N LLS+  ++SAP L PPISPSA RRR R   A TVTASSR +E AD+N+YYA GK
Sbjct: 1   MNSINSLLSIPSTHSAPVLFPPISPSADRRRRRRPPAFTVTASSRPKEQADSNSYYADGK 60

Query: 61  LVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRP 120
           LVDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+YDS+ICEALGYLQSHLMNTRP
Sbjct: 61  LVDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRP 120

Query: 121 SVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC 152
           SVALGML L++LSVPVSSAV+LHR IEIA  LL   RLC
Sbjct: 121 SVALGMLALLTLSVPVSSAVLLHRFIEIAVGLLAGIRLC 159

BLAST of Spg006954 vs. NCBI nr
Match: XP_022952614.1 (uncharacterized protein LOC111455246 [Cucurbita moschata])

HSP 1 Score: 214.2 bits (544), Expect = 8.0e-52
Identity = 120/158 (75.95%), Postives = 134/158 (84.81%), Query Frame = 0

Query: 1   MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR-TAVTVTASSRSRE-ADNNNYYASGKL 60
           M S+N LLS+  ++SAP L PPISPSA RRR R  A TVTASS+ +E AD+N+YYA GKL
Sbjct: 1   MNSINSLLSIPSTHSAPLLFPPISPSAHRRRRRPPAFTVTASSQPKEQADSNSYYADGKL 60

Query: 61  VDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRPS 120
           VDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+YDS+ICEALGYLQSHLMNTRPS
Sbjct: 61  VDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPS 120

Query: 121 VALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC 152
           VALGML L++LSVPVSSAVVLHR IEIA  LL   RLC
Sbjct: 121 VALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAGIRLC 158

BLAST of Spg006954 vs. NCBI nr
Match: XP_022989988.1 (uncharacterized protein LOC111487016 [Cucurbita maxima])

HSP 1 Score: 211.8 bits (538), Expect = 4.0e-51
Identity = 119/158 (75.32%), Postives = 133/158 (84.18%), Query Frame = 0

Query: 1   MKSVNCLLSV--SNSAPFLPPPISPSA-SRRRCRTAVTVTASSRSRE-ADNNNYYASGKL 60
           M S+N LLS+  ++SAP L PPISPS+  RRR   A TVTASSR +E AD+N+YYA GKL
Sbjct: 1   MNSINSLLSIPSTHSAPLLFPPISPSSHRRRRPPPAFTVTASSRPKEQADSNSYYADGKL 60

Query: 61  VDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRPS 120
           VDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+YDS+ICEALGYLQSHLMNTRPS
Sbjct: 61  VDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPS 120

Query: 121 VALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC 152
           VALGML L++LSVPVSSAVVLHR IEIA  LL   RLC
Sbjct: 121 VALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAGIRLC 158

BLAST of Spg006954 vs. ExPASy TrEMBL
Match: A0A6J1GM73 (uncharacterized protein LOC111455246 OS=Cucurbita moschata OX=3662 GN=LOC111455246 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.9e-52
Identity = 120/158 (75.95%), Postives = 134/158 (84.81%), Query Frame = 0

Query: 1   MKSVNCLLSV--SNSAPFLPPPISPSASRRRCR-TAVTVTASSRSRE-ADNNNYYASGKL 60
           M S+N LLS+  ++SAP L PPISPSA RRR R  A TVTASS+ +E AD+N+YYA GKL
Sbjct: 1   MNSINSLLSIPSTHSAPLLFPPISPSAHRRRRRPPAFTVTASSQPKEQADSNSYYADGKL 60

Query: 61  VDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRPS 120
           VDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+YDS+ICEALGYLQSHLMNTRPS
Sbjct: 61  VDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPS 120

Query: 121 VALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC 152
           VALGML L++LSVPVSSAVVLHR IEIA  LL   RLC
Sbjct: 121 VALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAGIRLC 158

BLAST of Spg006954 vs. ExPASy TrEMBL
Match: A0A6J1JRY7 (uncharacterized protein LOC111487016 OS=Cucurbita maxima OX=3661 GN=LOC111487016 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.9e-51
Identity = 119/158 (75.32%), Postives = 133/158 (84.18%), Query Frame = 0

Query: 1   MKSVNCLLSV--SNSAPFLPPPISPSA-SRRRCRTAVTVTASSRSRE-ADNNNYYASGKL 60
           M S+N LLS+  ++SAP L PPISPS+  RRR   A TVTASSR +E AD+N+YYA GKL
Sbjct: 1   MNSINSLLSIPSTHSAPLLFPPISPSSHRRRRPPPAFTVTASSRPKEQADSNSYYADGKL 60

Query: 61  VDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRPS 120
           VDESMIVLRKRIHEIK AEQ+HDPP DW +WEKRCYS+YDS+ICEALGYLQSHLMNTRPS
Sbjct: 61  VDESMIVLRKRIHEIKTAEQTHDPPRDWFDWEKRCYSNYDSNICEALGYLQSHLMNTRPS 120

Query: 121 VALGMLVLVSLSVPVSSAVVLHRLIEIAAALL---RLC 152
           VALGML L++LSVPVSSAVVLHR IEIA  LL   RLC
Sbjct: 121 VALGMLALLTLSVPVSSAVVLHRFIEIAVGLLAGIRLC 158

BLAST of Spg006954 vs. ExPASy TrEMBL
Match: A0A6J1JZG1 (uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.7e-50
Identity = 110/147 (74.83%), Postives = 127/147 (86.39%), Query Frame = 0

Query: 8   LSVSNSAPFLP-PPISPSASRRRCRTAVTVTASSRSREA-----DNNNYYASGKLVDESM 67
           +S +NSAPFL   PISPS+ RRR     TV ASSR  ++     +NNNYYASGKLVDESM
Sbjct: 4   ISSANSAPFLHFHPISPSSRRRRRLPLFTVIASSRGADSSSSNNNNNNYYASGKLVDESM 63

Query: 68  IVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGM 127
           IVLRKRIHEIKM EQSH+PP+DWL+WEKRCYSDYDSHICEALGYLQSHLMNTRPSV+LG+
Sbjct: 64  IVLRKRIHEIKMVEQSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVSLGI 123

Query: 128 LVLVSLSVPVSSAVVLHRLIEIAAALL 149
           L+L++LSVP+SSAV+LHR I+IAAALL
Sbjct: 124 LLLITLSVPLSSAVILHRFIDIAAALL 150

BLAST of Spg006954 vs. ExPASy TrEMBL
Match: A0A6J1FMN3 (uncharacterized protein LOC111445338 OS=Cucurbita moschata OX=3662 GN=LOC111445338 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 1.4e-49
Identity = 110/145 (75.86%), Postives = 126/145 (86.90%), Query Frame = 0

Query: 8   LSVSNSAPFLP-PPISPSASRRRCRTAVTVTASSR---SREADNNNYYASGKLVDESMIV 67
           +S +NSAPFL   PIS S+ RRR     TV ASSR   S  ++NNNYYASGKLVDESMIV
Sbjct: 4   ISSANSAPFLHFHPISSSSRRRRRPPLFTVMASSRGADSNSSNNNNYYASGKLVDESMIV 63

Query: 68  LRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGMLV 127
           LRKRIHEIKM E+SH+PP+DWL+WEKRCYSDYDSHICEALGYLQSHLMNTRPSVALG+L+
Sbjct: 64  LRKRIHEIKMVERSHEPPSDWLDWEKRCYSDYDSHICEALGYLQSHLMNTRPSVALGILL 123

Query: 128 LVSLSVPVSSAVVLHRLIEIAAALL 149
           L++LSVP+SSAV+LHR I+IAAALL
Sbjct: 124 LITLSVPLSSAVILHRFIDIAAALL 148

BLAST of Spg006954 vs. ExPASy TrEMBL
Match: A0A6J1DHC5 (uncharacterized protein LOC111020063 OS=Momordica charantia OX=3673 GN=LOC111020063 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 1.0e-44
Identity = 108/152 (71.05%), Postives = 121/152 (79.61%), Query Frame = 0

Query: 1   MKSVNCLLSVSNSAPFLPPPISP-SASRRRCRTAVTVTASSRSREADN---NNYYASGKL 60
           M+S+N + S +NS  FLP   SP S  RRR      VTASSRSREADN   NN+YASGKL
Sbjct: 1   MESLNSVASSTNSLRFLPS--SPISGGRRRRGLPSRVTASSRSREADNSGRNNHYASGKL 60

Query: 61  VDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQSHLMNTRPS 120
           V+ESMIVLRKRIHE+KMAE+   PPADWLEWEKR Y DYDSH+CEALGYLQSHLMNTRPS
Sbjct: 61  VEESMIVLRKRIHEMKMAEREAAPPADWLEWEKRFYRDYDSHVCEALGYLQSHLMNTRPS 120

Query: 121 VALGMLVLVSLSVPVSSAVVLHRLIEIAAALL 149
           VAL  L L++LSVPVSSA++LHR   IAAALL
Sbjct: 121 VALAFLTLLTLSVPVSSALILHRFFHIAAALL 150

BLAST of Spg006954 vs. TAIR 10
Match: AT2G01300.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15010.1); Has 73 Blast hits to 73 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 121.3 bits (303), Expect = 6.6e-28
Identity = 58/109 (53.21%), Postives = 85/109 (77.98%), Query Frame = 0

Query: 40  SRSREADNNNYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHI 99
           S +  +  ++YY  G+LVDE+MIVLRKRIHE+KM E++++PP+ W++WEKR Y+ YDS I
Sbjct: 39  SAAASSGKDHYYGGGRLVDENMIVLRKRIHEMKMVERNYEPPSHWMDWEKRFYNSYDSVI 98

Query: 100 CEALGYLQSHLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL 149
           C+++G LQS LMN+RP+VA+  L+ + +SVPVSS V+  RLI++   LL
Sbjct: 99  CDSVGLLQSFLMNSRPTVAIATLLFLLVSVPVSSTVIAFRLIDLLHWLL 147

BLAST of Spg006954 vs. TAIR 10
Match: AT1G15010.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G01300.1); Has 71 Blast hits to 71 proteins in 13 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-26
Identity = 56/100 (56.00%), Postives = 79/100 (79.00%), Query Frame = 0

Query: 49  NYYASGKLVDESMIVLRKRIHEIKMAEQSHDPPADWLEWEKRCYSDYDSHICEALGYLQS 108
           +YY  G+ VDE+M+VLRKRIHE+KM E++ +PP+ W++WEKR Y +YD+ IC+AL  LQ+
Sbjct: 37  DYYRGGRTVDENMVVLRKRIHEMKMVERNFEPPSHWMQWEKRFYCNYDATICDALTLLQT 96

Query: 109 HLMNTRPSVALGMLVLVSLSVPVSSAVVLHRLIEIAAALL 149
            LMN+RPSVA G  +L+ +SVPVSSAV   R++++A  LL
Sbjct: 97  FLMNSRPSVAFGTCLLLLVSVPVSSAVFAFRILDLALWLL 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7032552.12.7e-5276.73hypothetical protein SDJN02_06601, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6601844.14.7e-5275.63hypothetical protein SDJN03_07077, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023553368.18.0e-5275.47uncharacterized protein LOC111810800 [Cucurbita pepo subsp. pepo][more]
XP_022952614.18.0e-5275.95uncharacterized protein LOC111455246 [Cucurbita moschata][more]
XP_022989988.14.0e-5175.32uncharacterized protein LOC111487016 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1GM733.9e-5275.95uncharacterized protein LOC111455246 OS=Cucurbita moschata OX=3662 GN=LOC1114552... [more]
A0A6J1JRY71.9e-5175.32uncharacterized protein LOC111487016 OS=Cucurbita maxima OX=3661 GN=LOC111487016... [more]
A0A6J1JZG14.7e-5074.83uncharacterized protein LOC111489262 OS=Cucurbita maxima OX=3661 GN=LOC111489262... [more]
A0A6J1FMN31.4e-4975.86uncharacterized protein LOC111445338 OS=Cucurbita moschata OX=3662 GN=LOC1114453... [more]
A0A6J1DHC51.0e-4471.05uncharacterized protein LOC111020063 OS=Momordica charantia OX=3673 GN=LOC111020... [more]
Match NameE-valueIdentityDescription
AT2G01300.16.6e-2853.21unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT1G15010.11.2e-2656.00unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33782:SF13MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNITcoord: 23..148
NoneNo IPR availablePANTHERPTHR33782OS01G0121600 PROTEINcoord: 23..148

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg006954.1Spg006954.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane