Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATCATTTCAACCCCATCAGCTCAAAGCTTGAAGAGGCTATGGAGAAGAAGAAGATACCAAAGGCTAGGAAGTAGCAATGGCCCTACAAGATCATCAAGGAGCTTCAGGCTCGGGCGACTATGGCGGATGAGAAGACGAGCTTCGAAACTGAGATCGAAAATGGCGTCGCCATTGAAATTCCTGACGAAGTTTCACGACGCATATGTCGAAATGATGATGAGGGTGGCCAAGAGTGTGGGGAATATGTATGCCATTGGAGCCTTTGGCAATGGGAAGAGGATCCCAAAACCACAAAATCAAGTCTCTCTGGTGTCTTGTGGTGGAGAACATGTTGATGCCAAGTTGGTCTTGGAAATCTATAACAAACTTGCTGCTTCCAAGAACTTGGCTGCTGCTTTTTGA
mRNA sequence
ATGGATATCATTTCAACCCCATCAGCTCAAAGCTTGAAGAGGCTATGGAGAAGAAGAAGATACCAAAGGCTAGGAAGTAGCAATGGCCCTACAAGATCATCAAGGAGCTTCAGGCTCGGGCGACTATGGCGGATGAGAAGACGAGCTTCGAAACTGAGATCGAAAATGGCGTCGCCATTGAAATTCCTGACGAAGTTTCACGACGCATATGTCGAAATGATGATGAGGGTGGCCAAGAGTGTGGGGAATATGTATGCCATTGGAGCCTTTGGCAATGGGAAGAGGATCCCAAAACCACAAAATCAAGTCTCTCTGGTGTCTTGTGGTGGAGAACATGTTGATGCCAAGTTGGTCTTGGAAATCTATAACAAACTTGCTGCTTCCAAGAACTTGGCTGCTGCTTTTTGA
Coding sequence (CDS)
ATGGATATCATTTCAACCCCATCAGCTCAAAGCTTGAAGAGGCTATGGAGAAGAAGAAGATACCAAAGGCTAGGAAGTAGCAATGGCCCTACAAGATCATCAAGGAGCTTCAGGCTCGGGCGACTATGGCGGATGAGAAGACGAGCTTCGAAACTGAGATCGAAAATGGCGTCGCCATTGAAATTCCTGACGAAGTTTCACGACGCATATGTCGAAATGATGATGAGGGTGGCCAAGAGTGTGGGGAATATGTATGCCATTGGAGCCTTTGGCAATGGGAAGAGGATCCCAAAACCACAAAATCAAGTCTCTCTGGTGTCTTGTGGTGGAGAACATGTTGATGCCAAGTTGGTCTTGGAAATCTATAACAAACTTGCTGCTTCCAAGAACTTGGCTGCTGCTTTTTGA
Protein sequence
MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGRLWRMRRRASKLRSKMASPLKFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLEIYNKLAASKNLAAAF
Homology
BLAST of Spg006847 vs. NCBI nr
Match:
KAG7016737.1 (hypothetical protein SDJN02_21847, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 213.4 bits (542), Expect = 1.2e-51
Identity = 110/131 (83.97%), Postives = 116/131 (88.55%), Query Frame = 0
Query: 1 MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGRLWRMRRRASKLRSKMASPL 60
MDII+TPSA SLKRLWRRRRYQRLGS G R SRSFRLGRLWRMRRRA KLR KMASPL
Sbjct: 1 MDIIATPSALSLKRLWRRRRYQRLGSGTGAAR-SRSFRLGRLWRMRRRAPKLRLKMASPL 60
Query: 61 KFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLE 120
K L +FHDAYV+MM RVA +VGNMYAIG FGNGKRIPKP+NQ+SLVSCGGE VDAKLVLE
Sbjct: 61 KVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDAKLVLE 120
Query: 121 IYNKLAASKNL 132
IYNKLA SKNL
Sbjct: 121 IYNKLAVSKNL 130
BLAST of Spg006847 vs. NCBI nr
Match:
XP_022152306.1 (uncharacterized protein LOC111020054 [Momordica charantia])
HSP 1 Score: 213.4 bits (542), Expect = 1.2e-51
Identity = 112/138 (81.16%), Postives = 122/138 (88.41%), Query Frame = 0
Query: 1 MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGRLWRMRRRASKLRSKMASPL 60
M+II+TPS++S++R WRRR+YQRLGSSNGPTR SRSFRLGRLWRMRR A +LR KMASPL
Sbjct: 1 MEIIATPSSESIRRTWRRRKYQRLGSSNGPTR-SRSFRLGRLWRMRRGAPRLRFKMASPL 60
Query: 61 KFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNG---KRIPKPQNQVSLVSCGGEHVDAKL 120
K L +FHDAYVEMMMRVA VGNMYAIGAFG G + IPKP NQVSLVSCGGE VDAKL
Sbjct: 61 KLLARFHDAYVEMMMRVANGVGNMYAIGAFGGGGKRRMIPKPGNQVSLVSCGGEQVDAKL 120
Query: 121 VLEIYNKLAASKNLAAAF 136
VLEIYNKLAASKNLAAAF
Sbjct: 121 VLEIYNKLAASKNLAAAF 137
BLAST of Spg006847 vs. NCBI nr
Match:
KAG6579224.1 (hypothetical protein SDJN03_23672, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 212.6 bits (540), Expect = 2.1e-51
Identity = 110/131 (83.97%), Postives = 116/131 (88.55%), Query Frame = 0
Query: 1 MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGRLWRMRRRASKLRSKMASPL 60
MDII+TPSA SLKRLWRRRRYQRLGS G R SRSFRLGRLWRMRRRA KLR KMASPL
Sbjct: 1 MDIIATPSALSLKRLWRRRRYQRLGSGMGAAR-SRSFRLGRLWRMRRRAPKLRLKMASPL 60
Query: 61 KFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLE 120
K L +FHDAYV+MM RVA +VGNMYAIG FGNGKRIPKP+NQ+SLVSCGGE VDAKLVLE
Sbjct: 61 KVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDAKLVLE 120
Query: 121 IYNKLAASKNL 132
IYNKLA SKNL
Sbjct: 121 IYNKLAVSKNL 130
BLAST of Spg006847 vs. NCBI nr
Match:
XP_022939174.1 (uncharacterized protein LOC111445168 [Cucurbita moschata])
HSP 1 Score: 208.8 bits (530), Expect = 3.0e-50
Identity = 109/134 (81.34%), Postives = 115/134 (85.82%), Query Frame = 0
Query: 1 MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGRLWRMRRRASKLRSKMASPL 60
MDII+TPSA SLKRLWRRRRYQRLGS G R SRSF LGRLWRMRRRA KLR KMA P
Sbjct: 1 MDIIATPSALSLKRLWRRRRYQRLGSGTGAAR-SRSFHLGRLWRMRRRAPKLRLKMALPF 60
Query: 61 KFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLE 120
K L +FHDAYV+MM RVA VGNMYAIG FGNGKRIPKP+NQVSLVSCGGE VDAKLVLE
Sbjct: 61 KALARFHDAYVKMMTRVANKVGNMYAIGGFGNGKRIPKPRNQVSLVSCGGEQVDAKLVLE 120
Query: 121 IYNKLAASKNLAAA 135
+YNKLAASKNL+ A
Sbjct: 121 MYNKLAASKNLSVA 133
BLAST of Spg006847 vs. NCBI nr
Match:
XP_022993314.1 (uncharacterized protein LOC111489358 [Cucurbita maxima])
HSP 1 Score: 208.8 bits (530), Expect = 3.0e-50
Identity = 108/134 (80.60%), Postives = 116/134 (86.57%), Query Frame = 0
Query: 1 MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGRLWRMRRRASKLRSKMASPL 60
MDII+TPSA SLKRLWRRRRYQRLGS G R SRSFRLGRLWR+RRRA KLR KM SP
Sbjct: 1 MDIIATPSALSLKRLWRRRRYQRLGSGTGAAR-SRSFRLGRLWRIRRRAPKLRLKMVSPF 60
Query: 61 KFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLE 120
K L +FHDAYV+MMMRVA SVG+MYAIG +GNGKRIPKP NQVSLVSCGGE VD KLVLE
Sbjct: 61 KALARFHDAYVKMMMRVANSVGSMYAIGGYGNGKRIPKPSNQVSLVSCGGEQVDTKLVLE 120
Query: 121 IYNKLAASKNLAAA 135
+YNKLAASKNL+ A
Sbjct: 121 MYNKLAASKNLSVA 133
BLAST of Spg006847 vs. ExPASy TrEMBL
Match:
A0A6J1DHB4 (uncharacterized protein LOC111020054 OS=Momordica charantia OX=3673 GN=LOC111020054 PE=4 SV=1)
HSP 1 Score: 213.4 bits (542), Expect = 5.9e-52
Identity = 112/138 (81.16%), Postives = 122/138 (88.41%), Query Frame = 0
Query: 1 MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGRLWRMRRRASKLRSKMASPL 60
M+II+TPS++S++R WRRR+YQRLGSSNGPTR SRSFRLGRLWRMRR A +LR KMASPL
Sbjct: 1 MEIIATPSSESIRRTWRRRKYQRLGSSNGPTR-SRSFRLGRLWRMRRGAPRLRFKMASPL 60
Query: 61 KFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNG---KRIPKPQNQVSLVSCGGEHVDAKL 120
K L +FHDAYVEMMMRVA VGNMYAIGAFG G + IPKP NQVSLVSCGGE VDAKL
Sbjct: 61 KLLARFHDAYVEMMMRVANGVGNMYAIGAFGGGGKRRMIPKPGNQVSLVSCGGEQVDAKL 120
Query: 121 VLEIYNKLAASKNLAAAF 136
VLEIYNKLAASKNLAAAF
Sbjct: 121 VLEIYNKLAASKNLAAAF 137
BLAST of Spg006847 vs. ExPASy TrEMBL
Match:
A0A6J1JZV2 (uncharacterized protein LOC111489358 OS=Cucurbita maxima OX=3661 GN=LOC111489358 PE=4 SV=1)
HSP 1 Score: 208.8 bits (530), Expect = 1.5e-50
Identity = 108/134 (80.60%), Postives = 116/134 (86.57%), Query Frame = 0
Query: 1 MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGRLWRMRRRASKLRSKMASPL 60
MDII+TPSA SLKRLWRRRRYQRLGS G R SRSFRLGRLWR+RRRA KLR KM SP
Sbjct: 1 MDIIATPSALSLKRLWRRRRYQRLGSGTGAAR-SRSFRLGRLWRIRRRAPKLRLKMVSPF 60
Query: 61 KFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLE 120
K L +FHDAYV+MMMRVA SVG+MYAIG +GNGKRIPKP NQVSLVSCGGE VD KLVLE
Sbjct: 61 KALARFHDAYVKMMMRVANSVGSMYAIGGYGNGKRIPKPSNQVSLVSCGGEQVDTKLVLE 120
Query: 121 IYNKLAASKNLAAA 135
+YNKLAASKNL+ A
Sbjct: 121 MYNKLAASKNLSVA 133
BLAST of Spg006847 vs. ExPASy TrEMBL
Match:
A0A6J1FGC7 (uncharacterized protein LOC111445168 OS=Cucurbita moschata OX=3662 GN=LOC111445168 PE=4 SV=1)
HSP 1 Score: 208.8 bits (530), Expect = 1.5e-50
Identity = 109/134 (81.34%), Postives = 115/134 (85.82%), Query Frame = 0
Query: 1 MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGRLWRMRRRASKLRSKMASPL 60
MDII+TPSA SLKRLWRRRRYQRLGS G R SRSF LGRLWRMRRRA KLR KMA P
Sbjct: 1 MDIIATPSALSLKRLWRRRRYQRLGSGTGAAR-SRSFHLGRLWRMRRRAPKLRLKMALPF 60
Query: 61 KFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLE 120
K L +FHDAYV+MM RVA VGNMYAIG FGNGKRIPKP+NQVSLVSCGGE VDAKLVLE
Sbjct: 61 KALARFHDAYVKMMTRVANKVGNMYAIGGFGNGKRIPKPRNQVSLVSCGGEQVDAKLVLE 120
Query: 121 IYNKLAASKNLAAA 135
+YNKLAASKNL+ A
Sbjct: 121 MYNKLAASKNLSVA 133
BLAST of Spg006847 vs. ExPASy TrEMBL
Match:
A0A6J1H4C2 (uncharacterized protein LOC111460357 OS=Cucurbita moschata OX=3662 GN=LOC111460357 PE=4 SV=1)
HSP 1 Score: 204.1 bits (518), Expect = 3.6e-49
Identity = 104/135 (77.04%), Postives = 116/135 (85.93%), Query Frame = 0
Query: 1 MDIISTPSAQSLKRLWRRRRYQRLGSSNGPTRSSRSFRLGRLWRMRRRASKLRSKMASPL 60
MDII+TPSAQ ++RLWRRR YQ+LGS PTR SRSFRL RLW MRR+ASK++ K+ASPL
Sbjct: 1 MDIIATPSAQGMRRLWRRRGYQKLGSDTRPTR-SRSFRLRRLWHMRRQASKVQLKIASPL 60
Query: 61 KFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLE 120
K L KFHD YVEMMM+VA SVGN+YAIGAFGNGKRIPKP+NQVSL +C GEHVDAK VLE
Sbjct: 61 KLLAKFHDTYVEMMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLE 120
Query: 121 IYNKLAASKNLAAAF 136
IYNKLA SKNLA F
Sbjct: 121 IYNKLAPSKNLANGF 134
BLAST of Spg006847 vs. ExPASy TrEMBL
Match:
A0A5D3BKB9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1728G00020 PE=4 SV=1)
HSP 1 Score: 180.3 bits (456), Expect = 5.5e-42
Identity = 101/137 (73.72%), Postives = 113/137 (82.48%), Query Frame = 0
Query: 1 MDIISTPSAQSLKRLWRRRRYQRL--GSSNGPTRSSRSFRLGRLWRMRRRAS-KLRSKMA 60
MDII+T SAQ+L+RLWRRR YQRL GS+ PTRS RSFR+GR+ MRRRAS KLR KM+
Sbjct: 1 MDIIATSSAQNLRRLWRRRTYQRLRSGSNTVPTRSLRSFRVGRMMIMRRRASPKLRLKMS 60
Query: 61 SPLKFLTKFHDAYVEMMMRVAKSVGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKL 120
SPLK + K HDAYVEMMMR+A SVGNMYAIG FGN KRIPKPQNQV L GGE +DAKL
Sbjct: 61 SPLKVVAKIHDAYVEMMMRLANSVGNMYAIGGFGNRKRIPKPQNQVPL---GGEQIDAKL 120
Query: 121 VLEIYNKLAASKNLAAA 135
VLEIYNKLA+SKN + A
Sbjct: 121 VLEIYNKLASSKNSSNA 134
BLAST of Spg006847 vs. TAIR 10
Match:
AT2G47485.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G62650.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 48.9 bits (115), Expect = 3.7e-06
Identity = 47/131 (35.88%), Postives = 57/131 (43.51%), Query Frame = 0
Query: 14 RLWRR-RRYQRLGSSNGPTRSSR---------SFRLGRLWRMRRRASKLRSKMASPLKFL 73
R WRR R YQRL S S R R R WR++ K ASP K L
Sbjct: 4 RYWRRLRGYQRLDGSAKKASSGRRNVKRVKMDPTRKRRFWRIKIVPKLRILKKASPKKLL 63
Query: 74 TKFHDAYVEMMMRVAKS--VGNMYAIGAFGNGKRIPKPQNQVSLVSCGGEHVDAKLVLEI 132
T DAYV MM+R+A S VG+ Y G +G G + + D K ++EI
Sbjct: 64 TWLRDAYVNMMLRLANSRVVGSSYGYGEYGYGSGL------------ASKEYDEKKLVEI 122
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG7016737.1 | 1.2e-51 | 83.97 | hypothetical protein SDJN02_21847, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_022152306.1 | 1.2e-51 | 81.16 | uncharacterized protein LOC111020054 [Momordica charantia] | [more] |
KAG6579224.1 | 2.1e-51 | 83.97 | hypothetical protein SDJN03_23672, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
XP_022939174.1 | 3.0e-50 | 81.34 | uncharacterized protein LOC111445168 [Cucurbita moschata] | [more] |
XP_022993314.1 | 3.0e-50 | 80.60 | uncharacterized protein LOC111489358 [Cucurbita maxima] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1DHB4 | 5.9e-52 | 81.16 | uncharacterized protein LOC111020054 OS=Momordica charantia OX=3673 GN=LOC111020... | [more] |
A0A6J1JZV2 | 1.5e-50 | 80.60 | uncharacterized protein LOC111489358 OS=Cucurbita maxima OX=3661 GN=LOC111489358... | [more] |
A0A6J1FGC7 | 1.5e-50 | 81.34 | uncharacterized protein LOC111445168 OS=Cucurbita moschata OX=3662 GN=LOC1114451... | [more] |
A0A6J1H4C2 | 3.6e-49 | 77.04 | uncharacterized protein LOC111460357 OS=Cucurbita moschata OX=3662 GN=LOC1114603... | [more] |
A0A5D3BKB9 | 5.5e-42 | 73.72 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |
AT2G47485.1 | 3.7e-06 | 35.88 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |