Spg006611 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006611
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RNase H domain-containing protein
Location	scaffold7: 47642937 .. 47645086 (-)
RNA-Seq Expression	Spg006611
Synteny	Spg006611

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACGAACCGGCGATTTTCTACGAACCACTCCGGCACAGATCAGACTGAGGCGAGTCGGTTGCTCAAATGGTTGAAGCCTCCGGAAGGCGCCTGGAAACTCAACAGCGATGCCTCCTGGTGCGAAGAGAAGCAGATGGGCGGCGTCGGCTGGATCCTTAGACGTTGGGATGGGTCGATTATTGCAGCAGGCTTCCAGGTAGTACATCGACAATGGAAGATTGGTTGGCTTGAAGCCCTAACTATTTTGGAAGGGCTGAAAAACATTCCCCAAGACTCCCCTACGGTGTTTATCGAGCTTGACTCAGTGCAGGTGGTAAACTTACTCACGGGGAAGGAGGTGGATGTCACAGAAATCTCGTTGTTCATTGATGAAGCTCAACAAATAATTCGCCTGAAGAAGATGCACTCGATCCATCACGCTGCAAGATGCCACAACCACATGGCCCATCAGCTGGCTTGGTCCAACAATCAGTCTGAAACTTTTAAGGGCCCATTTCCTGTATGGCTTTTAAATATGAACAATTTGGACACTGAGGGCATATCTATCAATATTGGGGGCGCCTGTCCCAGGGTTGGTTGCCACTCGGAAGCACCAGTTCTTGGTTAATTATAAATTTACTTATTCTCAAAAAAAAAAAAAAAAATCATGAGTTTTAAAAAATGTTGAATAGGTCAAAAATTTATTAAAAAAAATTAGAAGCTCATGAACTTATTAGACATAAAATTAAAATTTATACACTTATTAGACATTTTTTCAAAAGTCAAATTTTAAGAATAGTATTTTTAAATGAATAACATAGTTATTTATTTTTTTTTTCTCTTTTTCTTTGTTAATATGTGAGAAAATGATAAGCATAAAAAAAAATAAAAACCAACAGCCTTTGCAGATCGAACTGTGGACCAGCAGCAAATTAAAGGGGTGGCTTGGGGCGACTTCGCCAACAGAGCAAGCCGAAATATTTGGATCAACAGGCCAACGTTTATATACTAATATATAAATGGGCTGAGTTCAGGGGGGGCTCGAGCCCCCGGGCCCATGCTAAATCCGTCACTGCTTCAACTATCAATCATATCCACTTCTAATTAAATTAAGTTGAAAGGATTGGAAAACAACTTTAATATAAGATTTTTGCAAATATTCCTAAGTTAGGAATTTAGTAAATTGATTGAGCTTGTGAATTCAATTTTTTTATTTCACACTAAAAAAAATGATAATATTAAAAAAAATATATTACAATAAAAATGTTTCTCTAGAAAAATAAATTTAAAGTATGGTATAACTATTTTTTTAAATAATGGAAATCATTTTAAAAATATTTAGTCATTTAAAAATTGATAAATAGACATTTTATTGAGTCACTAAAAAACACCATTAGATGATTAGAAAAAATATCTAAATTCGCCTAATGAAAAAAGTAAACAAATCAATCTAGGTTTGATTAATAATTTTAAAGAATATCTAAATTATTTATTAATATATGAATGTGAATCAATGTTGAGTATTAAATATACAAATTATATATTAAATTTTACATAAATAAACTCTCAATGAGTTAATAATTATTAATTTGCTAATTATTTTTTTAATTCTATTAACTTTCTAATTAATTGTAAAGAAAACTTAACAATCAATAAATATATGCATGCAAATTAAAATTAAAATTTTCATAAAAATTAAAATTCTAAAAAATCAATGGACCTTTCAATCTTCCAACAATGTCATATTTAAAGTTTAAGTTTCAACTTTTAAGATAATATCCTAATTCAAATTTCAGGAGAACGAGTTGCTCAGTAGAGTGGGCAGAAGCTCAGGCGCTTGTTGATGGAGTTTGTCTAGCTATGGAATCGAGTATATCACCAGTTTGGGCAGAAATTGATTCCAAAATTGTTTGGAATCTACTTCATGACCGCGACTATCACCTTAATGAGATTGCTCCCATTACTCAACAACTCAAGTTGTGGGTCACAGATCGTCACATCAAGGGGTTCTTACTAACCCCGAGAGATGGCAACAAAGTCGCACACCAGCTAGCTACTCATGCACGCACAATGAAACACTCCGAAGTTTGGTTGGAAGATTGTCCTCCTTGGGCCAACAACATCTTAGCTCATGAAATACCTCAATCTGATGTTCCAGACAGTTAG

mRNA sequence

ATGAAGACGAACCGGCGATTTTCTACGAACCACTCCGGCACAGATCAGACTGAGGCGAGTCGGTTGCTCAAATGGTTGAAGCCTCCGGAAGGCGCCTGGAAACTCAACAGCGATGCCTCCTGGTGCGAAGAGAAGCAGATGGGCGGCGTCGGCTGGATCCTTAGACGTTGGGATGGGTCGATTATTGCAGCAGGCTTCCAGGTAGTACATCGACAATGGAAGATTGGTTGGCTTGAAGCCCTAACTATTTTGGAAGGGCTGAAAAACATTCCCCAAGACTCCCCTACGGTGTTTATCGAGCTTGACTCAGTGCAGGTGGTAAACTTACTCACGGGGAAGGAGGTGGATGTCACAGAAATCTCGTTGTTCATTGATGAAGCTCAACAAATAATTCGCCTGAAGAAGATGCACTCGATCCATCACGCTGCAAGATGCCACAACCACATGGCCCATCAGCTGGCTTGGTCCAACAATCAGTCTGAAACTTTTAAGGGCCCATTTCCTGTATGGCTTTTAAATATGAACAATTTGGACACTGAGGGCATATCTATCAATATTGGGGGCGCCTGTCCCAGGGTTGGTTGCCACTCGGAAGCACCAGTTCTTGTAGAGTGGGCAGAAGCTCAGGCGCTTGTTGATGGAGTTTGTCTAGCTATGGAATCGAGTATATCACCAGTTTGGGCAGAAATTGATTCCAAAATTGTTTGGAATCTACTTCATGACCGCGACTATCACCTTAATGAGATTGCTCCCATTACTCAACAACTCAAGTTGTGGGTCACAGATCGTCACATCAAGGGGTTCTTACTAACCCCGAGAGATGGCAACAAAGTCGCACACCAGCTAGCTACTCATGCACGCACAATGAAACACTCCGAAGTTTGGTTGGAAGATTGTCCTCCTTGGGCCAACAACATCTTAGCTCATGAAATACCTCAATCTGATGTTCCAGACAGTTAG

Coding sequence (CDS)

ATGAAGACGAACCGGCGATTTTCTACGAACCACTCCGGCACAGATCAGACTGAGGCGAGTCGGTTGCTCAAATGGTTGAAGCCTCCGGAAGGCGCCTGGAAACTCAACAGCGATGCCTCCTGGTGCGAAGAGAAGCAGATGGGCGGCGTCGGCTGGATCCTTAGACGTTGGGATGGGTCGATTATTGCAGCAGGCTTCCAGGTAGTACATCGACAATGGAAGATTGGTTGGCTTGAAGCCCTAACTATTTTGGAAGGGCTGAAAAACATTCCCCAAGACTCCCCTACGGTGTTTATCGAGCTTGACTCAGTGCAGGTGGTAAACTTACTCACGGGGAAGGAGGTGGATGTCACAGAAATCTCGTTGTTCATTGATGAAGCTCAACAAATAATTCGCCTGAAGAAGATGCACTCGATCCATCACGCTGCAAGATGCCACAACCACATGGCCCATCAGCTGGCTTGGTCCAACAATCAGTCTGAAACTTTTAAGGGCCCATTTCCTGTATGGCTTTTAAATATGAACAATTTGGACACTGAGGGCATATCTATCAATATTGGGGGCGCCTGTCCCAGGGTTGGTTGCCACTCGGAAGCACCAGTTCTTGTAGAGTGGGCAGAAGCTCAGGCGCTTGTTGATGGAGTTTGTCTAGCTATGGAATCGAGTATATCACCAGTTTGGGCAGAAATTGATTCCAAAATTGTTTGGAATCTACTTCATGACCGCGACTATCACCTTAATGAGATTGCTCCCATTACTCAACAACTCAAGTTGTGGGTCACAGATCGTCACATCAAGGGGTTCTTACTAACCCCGAGAGATGGCAACAAAGTCGCACACCAGCTAGCTACTCATGCACGCACAATGAAACACTCCGAAGTTTGGTTGGAAGATTGTCCTCCTTGGGCCAACAACATCTTAGCTCATGAAATACCTCAATCTGATGTTCCAGACAGTTAG

Protein sequence

MKTNRRFSTNHSGTDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQDSPTVFIELDSVQVVNLLTGKEVDVTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLAWSNNQSETFKGPFPVWLLNMNNLDTEGISINIGGACPRVGCHSEAPVLVEWAEAQALVDGVCLAMESSISPVWAEIDSKIVWNLLHDRDYHLNEIAPITQQLKLWVTDRHIKGFLLTPRDGNKVAHQLATHARTMKHSEVWLEDCPPWANNILAHEIPQSDVPDS

Homology

[Close]

BLAST of Spg006611 vs. NCBI nr
Match: XP_022155262.1 (uncharacterized protein LOC111022403 [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 1.1e-15
Identity = 62/178 (34.83%), Postives = 87/178 (48.88%), Query Frame = 0


Query: 6   RFSTNHSGTDQTEASRL-------LKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWD 65
           +F T  S   +T  S L       LKW  PP   W LN+DASW +    GG+GWI+R WD
Sbjct: 45  KFVTESSYQSETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWD 104

Query: 66  GSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQDS--PTVFIELDSVQVVNLLTGKEVD 125
           G I+ AG + V     +  LEA  ILEGL+N+        + IE DS +V +LL  K  D
Sbjct: 105 GDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIETDSAEVESLLNRKRED 164

Query: 126 VTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLAWSNN---QSETFKGPFPVWL 172
           +T+    ++E   +    ++ +     R  N  AH LA   +   +S  +   FP WL
Sbjct: 165 LTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVLRESMIWVDCFPNWL 222

[Close]

BLAST of Spg006611 vs. NCBI nr
Match: XP_022156777.1 (uncharacterized protein LOC111023608 [Momordica charantia])

HSP 1 Score: 90.1 bits (222), Expect = 3.7e-14
Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 24  KWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTI 83
           +W  P   +WKLN+DA+W  +   GG+GWILR   G +I A  +++  +  I +LE + I
Sbjct: 78  RWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAI 137

Query: 84  LEGLKNIPQD---------SPTVFIELDSVQVVNLLTGKEVDVTEISLFIDEAQQIIRLK 143
            EGL+ I Q+            + +E DS++ ++LL  +  D TEI   ++E  Q++   
Sbjct: 138 CEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDM 197

Query: 144 KMHSIHHAARCHNHMAHQLA 155
           K+ S+ H +R  N +AH LA
Sbjct: 198 KIVSMRHISREANKVAHDLA 217

[Close]

BLAST of Spg006611 vs. NCBI nr
Match: XP_022143535.1 (uncharacterized protein LOC111013412 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 4.8e-14
Identity = 46/132 (34.85%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 24  KWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTI 83
           +W  P   +WKLN++A+W  +   GG+GWILR   G +I A  +++  +  I +LE + I
Sbjct: 78  QWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAI 137

Query: 84  LEGLKNIPQD-SPTVFIELDSVQVVNLLTGKEVDVTEISLFIDEAQQIIRLKKMHSIHHA 143
            EGL+ I Q+    + +E DS++ ++LL  +  D TEI   ++E  Q+++  ++ S+ H 
Sbjct: 138 CEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHI 197

Query: 144 ARCHNHMAHQLA 155
           +R  N +AH LA
Sbjct: 198 SREANKVAHGLA 209

[Close]

BLAST of Spg006611 vs. NCBI nr
Match: XP_022143317.1 (uncharacterized protein LOC111013216 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 6.3e-14
Identity = 42/98 (42.86%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 23  LKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALT 82
           ++W  PP   WKLN+DASW EE+++GG+GWIL    G I+ AG   +  + +I  LE +T
Sbjct: 103 VRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMT 162

Query: 83  ILEGLK--NIPQDSPTVFIELDSVQVVNLLTGKEVDVT 119
           I+ GL+  N+   SP +++E DSV+V+ L+  ++VD+T
Sbjct: 163 IIRGLQFINMQSRSP-IYLESDSVEVIRLMKKEDVDLT 199

[Close]

BLAST of Spg006611 vs. NCBI nr
Match: KAF4360260.1 (hypothetical protein F8388_020551 [Cannabis sativa] >KAF4393916.1 hypothetical protein G4B88_025885 [Cannabis sativa])

HSP 1 Score: 82.4 bits (202), Expect = 7.7e-12
Identity = 52/171 (30.41%), Postives = 82/171 (47.95%), Query Frame = 0


Query: 14  TDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQW 73
           T   E S+   W++PP G   +N DA+        G G+I R WDG ++ AG    +R  
Sbjct: 215 TTNMELSKTTHWIRPPAGYIAVNCDAAMNSGAAGIGTGFIWRNWDGKLLIAGMNYSNRCC 274

Query: 74  KIGWLEALTILEGLKNIPQ--DSPTVFIELDSVQVVNLLTGKEVDVTEISLFIDEAQQII 133
            +   EA  ILE L N+P   DSP + I+ D   +V+ +  ++  +T ++  I + +  +
Sbjct: 275 SVDMAEAWAILEALNNMPNTTDSP-MEIQSDCKHLVDKIMNQDNHLTAVNTIIHQIRMQM 334

Query: 134 RLKKMHSIHHAARCHNHMAHQLA---WSNNQSETFKGPFPVWLLNMNNLDT 180
                +SI H  R +N  AH LA    +   ++ F  PFP WL      D+
Sbjct: 335 EKLNCNSIVHVNRNNNECAHMLARKCLATKTTQIFTHPFPRWLAQFCTADS 384

[Close]

BLAST of Spg006611 vs. ExPASy TrEMBL
Match: A0A6J1DNV9 (uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022403 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.5e-16
Identity = 62/178 (34.83%), Postives = 87/178 (48.88%), Query Frame = 0


Query: 6   RFSTNHSGTDQTEASRL-------LKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWD 65
           +F T  S   +T  S L       LKW  PP   W LN+DASW +    GG+GWI+R WD
Sbjct: 45  KFVTESSYQSETSLSMLHKTLNNKLKWEPPPMHIWTLNADASWSDSTHRGGIGWIIRSWD 104

Query: 66  GSIIAAGFQVVHRQWKIGWLEALTILEGLKNIPQDS--PTVFIELDSVQVVNLLTGKEVD 125
           G I+ AG + V     +  LEA  ILEGL+N+        + IE DS +V +LL  K  D
Sbjct: 105 GDIVLAGNRFVEACNNVKLLEASAILEGLRNLTNLGVLRPLHIETDSAEVESLLNRKRED 164

Query: 126 VTEISLFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLAWSNN---QSETFKGPFPVWL 172
           +T+    ++E   +    ++ +     R  N  AH LA   +   +S  +   FP WL
Sbjct: 165 LTKTGWVVEEILNLRDSCEILAFAKVGRETNGCAHSLAQRASVLRESMIWVDCFPNWL 222

[Close]

BLAST of Spg006611 vs. ExPASy TrEMBL
Match: A0A6J1DSV1 (uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023608 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.8e-14
Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = 0


Query: 24  KWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTI 83
           +W  P   +WKLN+DA+W  +   GG+GWILR   G +I A  +++  +  I +LE + I
Sbjct: 78  RWKPPTSNSWKLNTDAAWRADTNTGGIGWILRDEKGEVIKADCRIIRTERNITYLEVMAI 137

Query: 84  LEGLKNIPQD---------SPTVFIELDSVQVVNLLTGKEVDVTEISLFIDEAQQIIRLK 143
            EGL+ I Q+            + +E DS++ ++LL  +  D TEI   ++E  Q++   
Sbjct: 138 CEGLRAIRQEHCRPIQQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMEDM 197

Query: 144 KMHSIHHAARCHNHMAHQLA 155
           K+ S+ H +R  N +AH LA
Sbjct: 198 KIVSMRHISREANKVAHDLA 217

[Close]

BLAST of Spg006611 vs. ExPASy TrEMBL
Match: A0A6J1CP26 (uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013412 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.3e-14
Identity = 46/132 (34.85%), Postives = 79/132 (59.85%), Query Frame = 0


Query: 24  KWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALTI 83
           +W  P   +WKLN++A+W  +   GG+GWILR   G +I A  +++  +  I +LE + I
Sbjct: 78  QWKPPTSNSWKLNTNAAWRADTNTGGIGWILRDEKGEVIKASCRIIRAERNITYLEVMAI 137

Query: 84  LEGLKNIPQD-SPTVFIELDSVQVVNLLTGKEVDVTEISLFIDEAQQIIRLKKMHSIHHA 143
            EGL+ I Q+    + +E DS++ ++LL  +  D TEI   ++E  Q+++  ++ S+ H 
Sbjct: 138 CEGLRAIRQEHCRPIHLESDSLEAIHLLHRQCQDQTEIIWLLEEIWQMMKDMEIVSMRHI 197

Query: 144 ARCHNHMAHQLA 155
           +R  N +AH LA
Sbjct: 198 SREANKVAHGLA 209

[Close]

BLAST of Spg006611 vs. ExPASy TrEMBL
Match: A0A6J1CQG0 (uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013216 PE=4 SV=1)

HSP 1 Score: 89.4 bits (220), Expect = 3.0e-14
Identity = 42/98 (42.86%), Postives = 66/98 (67.35%), Query Frame = 0


Query: 23  LKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQWKIGWLEALT 82
           ++W  PP   WKLN+DASW EE+++GG+GWIL    G I+ AG   +  + +I  LE +T
Sbjct: 103 VRWSAPPTNCWKLNTDASWSEEREVGGIGWILCDCRGEIVLAGNCKIREKKEINALELMT 162

Query: 83  ILEGLK--NIPQDSPTVFIELDSVQVVNLLTGKEVDVT 119
           I+ GL+  N+   SP +++E DSV+V+ L+  ++VD+T
Sbjct: 163 IIRGLQFINMQSRSP-IYLESDSVEVIRLMKKEDVDLT 199

[Close]

BLAST of Spg006611 vs. ExPASy TrEMBL
Match: A0A7J6ERF5 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020551 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.7e-12
Identity = 52/171 (30.41%), Postives = 82/171 (47.95%), Query Frame = 0


Query: 14  TDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIAAGFQVVHRQW 73
           T   E S+   W++PP G   +N DA+        G G+I R WDG ++ AG    +R  
Sbjct: 215 TTNMELSKTTHWIRPPAGYIAVNCDAAMNSGAAGIGTGFIWRNWDGKLLIAGMNYSNRCC 274

Query: 74  KIGWLEALTILEGLKNIPQ--DSPTVFIELDSVQVVNLLTGKEVDVTEISLFIDEAQQII 133
            +   EA  ILE L N+P   DSP + I+ D   +V+ +  ++  +T ++  I + +  +
Sbjct: 275 SVDMAEAWAILEALNNMPNTTDSP-MEIQSDCKHLVDKIMNQDNHLTAVNTIIHQIRMQM 334

Query: 134 RLKKMHSIHHAARCHNHMAHQLA---WSNNQSETFKGPFPVWLLNMNNLDT 180
                +SI H  R +N  AH LA    +   ++ F  PFP WL      D+
Sbjct: 335 EKLNCNSIVHVNRNNNECAHMLARKCLATKTTQIFTHPFPRWLAQFCTADS 384

[Close]

BLAST of Spg006611 vs. TAIR 10
Match: AT2G34320.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 47.8 bits (112), Expect = 2.0e-05
Identity = 44/175 (25.14%), Postives = 76/175 (43.43%), Query Frame = 0


Query: 3   TNRRFSTNHSGTDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSII 62
           T R      SG  Q E +  ++W  PP    K N+DA+W  E    G+GWILR   G ++
Sbjct: 116 TRRELEGKASG-PQVERNLSVQWKAPPYQWVKCNTDATWQLENPRCGIGWILRNESGGVL 175

Query: 63  AAGFQVVHRQWKIGWLEALTILEGLKNIPQ-DSPTVFIELDSVQVVNLLTGKEVDVTEIS 122
             G + + R   +   E   +   +  + + +   +  E D+  +VNLL   +   T + 
Sbjct: 176 WMGARALPRTKNVLEAELEALRWAVLTMSRFNYKRIIFESDAQALVNLLNSDDFWPT-LQ 235

Query: 123 LFIDEAQQIIRLKKMHSIHHAARCHNHMAHQLA-----WSNNQSETFKGPFPVWL 172
             +++ QQ++   +        R  N +A ++A     +SN   + F    P WL
Sbjct: 236 PALEDIQQLLHHFEEVKFEFTPRGGNKVADRIARESISFSNYDPKLF-SIVPQWL 287

[Close]

BLAST of Spg006611 vs. TAIR 10
Match: AT5G65005.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 43.9 bits (102), Expect = 2.8e-04
Identity = 22/62 (35.48%), Postives = 29/62 (46.77%), Query Frame = 0


Query: 4   NRRFSTNHSGTDQTEASRLLKWLKPPEGAWKLNSDASWCEEKQMGGVGWILRRWDGSIIA 63
           N   +   +G    + SR  KW  P     K N DAS  E   + G+GWILR   G++I 
Sbjct: 84  NTMTNEQQNGNRNADPSRNTKWSPPGRDKLKCNYDASHHERNTVSGLGWILRNSQGTVIE 143

Query: 64  AG 66
            G
Sbjct: 144 CG 145

The following BLAST results are available for this feature:

BLAST of Spg006611 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155262.1	1.1e-15	34.83	uncharacterized protein LOC111022403 [Momordica charantia]	[more]
XP_022156777.1	3.7e-14	34.29	uncharacterized protein LOC111023608 [Momordica charantia]	[more]
XP_022143535.1	4.8e-14	34.85	uncharacterized protein LOC111013412 [Momordica charantia]	[more]
XP_022143317.1	6.3e-14	42.86	uncharacterized protein LOC111013216 [Momordica charantia]	[more]
KAF4360260.1	7.7e-12	30.41	hypothetical protein F8388_020551 [Cannabis sativa] >KAF4393916.1 hypothetical p...	[more]

BLAST of Spg006611 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006611 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DNV9	5.5e-16	34.83	uncharacterized protein LOC111022403 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DSV1	1.8e-14	34.29	uncharacterized protein LOC111023608 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1CP26	2.3e-14	34.85	uncharacterized protein LOC111013412 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1CQG0	3.0e-14	42.86	uncharacterized protein LOC111013216 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A7J6ERF5	3.7e-12	30.41	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=F8388_020551 PE=4 SV=1	[more]

BLAST of Spg006611 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34320.1	2.0e-05	25.14	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]
AT5G65005.1	2.8e-04	35.48	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 31..158 e-value: 9.7E-10 score: 40.6
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 189..296 e-value: 3.2E-5 score: 25.7
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 36..154 e-value: 1.5E-14 score: 53.9 coord: 203..286 e-value: 3.4E-12 score: 46.2
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 23..159
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 203..311
None	No IPR available	PANTHER	PTHR33033	POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 203..311
None	No IPR available	PANTHER	PTHR33033:SF67	SUBFAMILY NOT NAMED	coord: 23..159
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 35..154 e-value: 8.23661E-10 score: 53.8572
IPR044730	Ribonuclease H-like domain, plant type	CDD	cd06222	RNase_H_like	coord: 186..283 e-value: 3.67349E-9 score: 51.9312
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 205..290
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 32..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006611.1	Spg006611.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity