Spg006592 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006592
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Protein CHROMATIN REMODELING 20 isoform X4
Location	scaffold7: 47886098 .. 47887319 (+)
RNA-Seq Expression	Spg006592
Synteny	Spg006592

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGACGTTGAGCATTCAAAAATTTCGAGATTGATCCATCAAGATGAATCCCTCAAGAGTCTTAAAGTCCCATTATCAGTATCTCATCCTTCATCTGAATTATCATTATCTACGGTAATTGAAAACTCTATCAGTTATGCAGAGGCTTTAAAGAATATTCCAAAGTCAGATGATGGTGTTTCATTGGAAACAAATCCAGTTTCCGGCATTCCTCAGGCATCTTATTCGATGAGGTTTTAAATGTCAATTTTGAAGAACTTTGGGTGGTCTCCAGATTATTTGCTCATAATAATTGGAAGAATATAATTGAGACTCTAGAATTTTATTTCAAATCCAAGATTTCGATCCATCCACTTTTCATTGCACGAGGCTTTCATCAAATTTGAAGATGATAATGTTACTAAATCTACTCTGTTGGGAAATGGAAGGCATTTGGAGATTTTCATCTGCTTGAAAAATGGTCTAGCAATATTCATAGGCATCAAAGATTCATTGAGGGTTATGGTGGATGGATTGTGATTAAGTATCTGCCTTTAGATTTTTGGGGTCGAAAATCTTTTGAAGCAATTGGGGCTTATTTTGGAGGATCAGAGTGTATTTCATATGAGACTCATAATATGATTGAGGTCAAGTGAAATTTATGTAGTTTTATGCTAGCTACTATAGAACTTAATGACTTAAGTAAGGGGAATATTTATCTCCATTTTGGGGATGTGATCACTTTGGATCCTCCAAATATTATCCATCGGAATCTTGAGTTAAGAGATTTTTCTAATCCAATGGATCTTTTTAGAATCAAACAAGTATGGAAGATGAAGGGTTTGATTAAGGTTCCACTATGCAGGAATCCAGGGGATTAATTAAATTTCAAGGGACCCTAAGGTGGTTTAAAAAAAAGGTCAGTTTACCTTGTGATATTTGTAGTTTGAAAGAGCATTCAATTCCATCAAATATTCCTCATGTTGATGATGACTCTTCGGTTGCTCATCCTCCTAAAACTATTCAGGAAGAAAATTCACTAGTGAGAAATCAGTCTGTTGAAGTTGCTTTAATTGAATATGATGTCTGGATGAGTGTGAACGTTAGTGGTGTGTTTCCAAAGCTGGTAATAAATGAGAAAGAGAAGGAACCATTAATATGGTTGAACCTATTGGAGCCCCCACAACCTGAACCTATTCTTAGGACGGTTAGAGTTGGAAATCCCTCTCGGGATGGTTAA

mRNA sequence

ATGATAGACGTTGAGCATTCAAAAATTTCGAGATTGATCCATCAAGATGAATCCCTCAAGAGTCTTAAAGTCCCATTATCAGTATCTCATCCTTCATCTGAATTATCATTATCTACGGTAATTGAAAACTCTATCAGTTATGCAGAGGCTTTAAAGAATATTCCAAAGTCAGATGATGGTGTTTCATTGGAAACAAATCCAGTTTCCGGCATTCCTCAGGCATCTTATTCGATGAGGCATCAAAGATTCATTGAGGGTTATGGTGGATGGATTGTGATTAAGTATCTGCCTTTAGATTTTTGGGGTCGAAAATCTTTTGAAGCAATTGGGGCTTATTTTGGAGGATCAGATTTGAAAGAGCATTCAATTCCATCAAATATTCCTCATGTTGATGATGACTCTTCGGTTGCTCATCCTCCTAAAACTATTCAGGAAGAAAATTCACTAGTGAGAAATCAGTCTGTTGAAGTTGCTTTAATTGAATATGATGTCTGGATGAGTGTGAACGTTAGTGGTGTGTTTCCAAAGCTGGTAATAAATGAGAAAGAGAAGGAACCATTAATATGGTTGAACCTATTGGAGCCCCCACAACCTGAACCTATTCTTAGGACGGTTAGAGTTGGAAATCCCTCTCGGGATGGTTAA

Coding sequence (CDS)

ATGATAGACGTTGAGCATTCAAAAATTTCGAGATTGATCCATCAAGATGAATCCCTCAAGAGTCTTAAAGTCCCATTATCAGTATCTCATCCTTCATCTGAATTATCATTATCTACGGTAATTGAAAACTCTATCAGTTATGCAGAGGCTTTAAAGAATATTCCAAAGTCAGATGATGGTGTTTCATTGGAAACAAATCCAGTTTCCGGCATTCCTCAGGCATCTTATTCGATGAGGCATCAAAGATTCATTGAGGGTTATGGTGGATGGATTGTGATTAAGTATCTGCCTTTAGATTTTTGGGGTCGAAAATCTTTTGAAGCAATTGGGGCTTATTTTGGAGGATCAGATTTGAAAGAGCATTCAATTCCATCAAATATTCCTCATGTTGATGATGACTCTTCGGTTGCTCATCCTCCTAAAACTATTCAGGAAGAAAATTCACTAGTGAGAAATCAGTCTGTTGAAGTTGCTTTAATTGAATATGATGTCTGGATGAGTGTGAACGTTAGTGGTGTGTTTCCAAAGCTGGTAATAAATGAGAAAGAGAAGGAACCATTAATATGGTTGAACCTATTGGAGCCCCCACAACCTGAACCTATTCTTAGGACGGTTAGAGTTGGAAATCCCTCTCGGGATGGTTAA

Protein sequence

MIDVEHSKISRLIHQDESLKSLKVPLSVSHPSSELSLSTVIENSISYAEALKNIPKSDDGVSLETNPVSGIPQASYSMRHQRFIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGGSDLKEHSIPSNIPHVDDDSSVAHPPKTIQEENSLVRNQSVEVALIEYDVWMSVNVSGVFPKLVINEKEKEPLIWLNLLEPPQPEPILRTVRVGNPSRDG

Homology

[Close]

BLAST of Spg006592 vs. NCBI nr
Match: XP_038904899.1 (uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida])

HSP 1 Score: 57.8 bits (138), Expect = 1.4e-04
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 83  FIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGG 116
           ++ GYGGWI IK LPLD+W +++FEAIG YFGG
Sbjct: 247 YVRGYGGWISIKNLPLDYWCKQTFEAIGKYFGG 279

[Close]

BLAST of Spg006592 vs. NCBI nr
Match: TYK06566.1 (Fanconi anemia group M protein isoform X6 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-04
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 76  YSMRHQRFIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGG 116
           +     + ++G+GGW+ IK LPLD+W RK+FE IG YFGG
Sbjct: 479 FKRNRPKVVKGFGGWLRIKNLPLDYWCRKTFEVIGNYFGG 518

[Close]

BLAST of Spg006592 vs. NCBI nr
Match: XP_031738083.1 (uncharacterized protein LOC116402658 [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 4.0e-04
Identity = 23/41 (56.10%), Postives = 30/41 (73.17%), Query Frame = 0


Query: 77  SMRHQR--FIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGG 116
           +M+H R   ++GYGGW+ +K LPLD W R  FEAIG +FGG
Sbjct: 3   NMKHSRPLVLKGYGGWLKVKNLPLDLWSRSVFEAIGDHFGG 43

[Close]

BLAST of Spg006592 vs. ExPASy TrEMBL
Match: A0A5D3C8A5 (Fanconi anemia group M protein isoform X6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold453G00270 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.5e-04
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 0


Query: 76  YSMRHQRFIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGG 116
           +     + ++G+GGW+ IK LPLD+W RK+FE IG YFGG
Sbjct: 479 FKRNRPKVVKGFGGWLRIKNLPLDYWCRKTFEVIGNYFGG 518

[Close]

BLAST of Spg006592 vs. ExPASy TrEMBL
Match: A0A5D3BJ01 (Protein CHROMATIN REMODELING 20 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold429G00090 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.5e-04
Identity = 31/80 (38.75%), Postives = 40/80 (50.00%), Query Frame = 0


Query: 80  HQRFIEGYGGWIVIKYLPLDFWGRKSFEAIGAYFGGSDLKEHSIPSNIPHVDDDSSVAHP 139
           H   + GY GWI ++ LPLD+W RK FEA GAYFGG    E  +   + H  D+   A  
Sbjct: 205 HPNVVCGYWGWISMRNLPLDYWCRKIFEATGAYFGG---LEAILVETLNHTKDEEGEALE 264

Query: 140 -------PKTIQEENSLVRN 153
                  PK   E ++  RN
Sbjct: 265 INSEWVFPKEAGELSNFTRN 281

The following BLAST results are available for this feature:

BLAST of Spg006592 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904899.1	1.4e-04	66.67	uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida]	[more]
TYK06566.1	3.0e-04	52.50	Fanconi anemia group M protein isoform X6 [Cucumis melo var. makuwa]	[more]
XP_031738083.1	4.0e-04	56.10	uncharacterized protein LOC116402658 [Cucumis sativus]	[more]

BLAST of Spg006592 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006592 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C8A5	1.5e-04	52.50	Fanconi anemia group M protein isoform X6 OS=Cucumis melo var. makuwa OX=1194695...	[more]
A0A5D3BJ01	9.5e-04	38.75	Protein CHROMATIN REMODELING 20 isoform X4 OS=Cucumis melo var. makuwa OX=119469...	[more]

BLAST of Spg006592 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006592.1	Spg006592.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0097159	organic cyclic compound binding