Spg006562 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006562
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	protein LIKE COV 2-like
Location	scaffold9: 18902579 .. 18905287 (-)
RNA-Seq Expression	Spg006562
Synteny	Spg006562

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTAATAGAATAAAATATTATATCATTAAATGTCGCGTGAAATGTTGAAATAAGTACTGCAACTAGAAATTTTCCCGAGATAAATGGTTCATTGTTAACTTAAAAAAAAAAAAAAAACGGCGCTTGGCAGTTATCAAAGCAAACAGCCAAAGACAACAAAAATTCAACGAAACGACCATCGGGAAAAAGCCAAGAATCTCGACCTCAGTCTTCCTTCAATGGTGGATACCAGAGAATCCACTTCCACTCCGATGATCGAATCTGATCCCGACGATGATACTCCGAAGTCCCCTCCAGCTTCTCCGAATTCATCCACTCGCAAGGTACCCCACTCCATTTTCTTTCCATTTTCGAGCTTTTTACTCGTCTATACCATCTAGCAAATCTTTTTCTGTAGATTATATCTTTTCTGTCTAGCGTTACTTCATTATTGAAGCTACCTAGGTTTCATTCTAGCTATAGAGGGTATTTTTAGTTGAAGGATCGATAGAGAAGGAAGAGAAATCAGTCTTTGATTGGAGGATGGGTACTTAGGGATTCCCTTTTTGGTGTGATGATATCTTCAGGAACAATTATCTACTTACCTAAGGACTTCAAAGAAAGGAAGCTTTTGAAACTAATATATGAATCTCTGTTTTCTTGAAAATGTCGTGAAAGTTTCTTCCATGAAGCTTTCAATAAATATATAATGCCTCTCTTATTGATATCCATCTCCCTTATGAATGGTGTTTCTCATGATCTCTGTCAGAAACCTTATGGATTCCCTTATCGGTATATTATGTATCTTCAATGTATACCAAAGTTCTATTGTGCCTCACCAGTTCTTATTTGTTCTTTAGAATTCAAGGACACAGTCATACAACCTGTAGAACAAATCATGTTCAATTAAGATCGTGACCAGTTCCTATTTGTTCTTGAAAATTTTCTTTTGAAATCGGACTGTTGCTTGTTTTAATTTGAGAATATGTGGCTTCAACATCCAAGCCTCCAAACTCTCAAACAATGTTTGAATAGTTTGAATGACTAGGGGTGACCTTTCATTTTCCTTGACGAGCTGAAAGTGTTAGAGAATTTACTAGTTGAATGGAATTTGGGCATCTCTCGAAGTTCCCTGCTAAGGTAAGCTTAACATCCATAACTGTAATTCCTGAAACTTGCAAAAATTGAGCAACAATTTGTGGGGGACTCTTTCCTATCTAAATCAAAAAAGCTATGTTGAAAGGGGATCATTCATACAATCCACATTTCTAAACAGACAACAAAGGACGAATGATTTTTCCATAAAGCACTTTTTGACCCCAACCTTCCTTAACGAATACCCCTCCAATTTGATGGGAGGTGATGTAGGGAACACAAGATATAAAAGTTCATCACAGAATATGACGTTTGCTTGAAGAGAAAGAACATTGCCATGTCACCTGCCACTGCCAGCTTACTCTAACCTCTTCCTACCTCAAAGGTGCCTAGGAGTTTAGGACAACATACCAATGAACGTCATTGATGGTTACTAAGATTAGAAGGAAAAGGTATTTTTCTCCTGGATATTGGCTTACTGAGATTAGAAGGAAAAGGTATTGTTCTGCTAGATATTGATTGATTAACCAAATATGCACATTCCTCACGCACAATCCCCCAAACAATGCTCTTTCCGCAGCCCAATAGTTCAGTAAGTAATTCATTTGCTTGCATGGGTCCCATAGGCCATTGTGTTTGACAGTGATTATGTGTTTTGAGTAACTTCTGGAAGGAACTGTTTAAATTGCACAAGACCACCATTGAAAGGAGTACAACGTACCCCCACACTATTGGCTAATTAGAGTGGTAAACTGTTGCTTGAGAGTTACCTTGTTTTGTCTTGCATCGGATAAGCCACAAACATGAACAAATTGGATTTCCTGAACTAGGTATACCTATAATTGTTCCATAGACCAGGTACTATATGAAAGAGATGTCATATTGAATGACCTATGGTTCCAATTGATGTGTGCCCAACAGATTATGAAGACTAATGAAGACAAGCACTTCAGGGGTTTAAAATTCCAAGTTGGTAATATGTTGTATTTGAAGTTACAACCCTAGTCACAAAAGTCACGCAAAACTGGCCTCTACAATTAGGCATTACTTGGTGCTAGAGAGAGCTGGGAGGGTTGCTTACAAGCTACAGTTCCCATCCCTTTTTATAGTGTCTACCAGTACTTCATGTTTTCCAGCTAAAGTAAAATTTTTTATGGGTTATTTATAAAATAAATTGGGTTTTCAACCATGTCAATATTGTTTTTTTTTTTCAGGCTTGCTATGCTGTTCTTCAGAGTTGGGTCTCAAAGAAGTTCATGACTGGATGGTAATCAGAATTAAAAGAGTGCTTCATACTGCTTGTCTGCTACCATTTAAATCAATTTCTAGGTCTTCCATTCCAACTATACAAGATTTTGATAAATGATGAAATTGCAGTGTGGTTCTGTTTCCTGTTGCCATTACATTCTTCACCACATGGTGGTTTGTCCAGTTTGTGGATAGCTTCTTTAGCCCTTTATATGCCAGGCTTGGCATAAACATATTTGGTATGTCTCTTATGTTCCAATTGGATTGTTGTTGGTTAAGTTTGGGTGCTTTGGAAAATATTTTTATGGACTTCTTATGTTTTTGACTCTCTGTTCGGTTACACAGTTTGCAATATGTTGGTTACTGAGATGCATAAAGCTTATTGA

mRNA sequence

ATGGTGGATACCAGAGAATCCACTTCCACTCCGATGATCGAATCTGATCCCGACGATGATACTCCGAAGTCCCCTCCAGCTTCTCCGAATTCATCCACTCGCAAGGCTTGCTATGCTGTTCTTCAGAGTTGGGTCTCAAAGAAGTTCATGACTGGATGTGTGGTTCTGTTTCCTGTTGCCATTACATTCTTCACCACATGGTGGTTTGTCCAGTTTGTGGATAGCTTCTTTAGCCCTTTATATGCCAGGCTTGGCATAAACATATTTGTTTGCAATATGTTGGTTACTGAGATGCATAAAGCTTATTGA

Coding sequence (CDS)

ATGGTGGATACCAGAGAATCCACTTCCACTCCGATGATCGAATCTGATCCCGACGATGATACTCCGAAGTCCCCTCCAGCTTCTCCGAATTCATCCACTCGCAAGGCTTGCTATGCTGTTCTTCAGAGTTGGGTCTCAAAGAAGTTCATGACTGGATGTGTGGTTCTGTTTCCTGTTGCCATTACATTCTTCACCACATGGTGGTTTGTCCAGTTTGTGGATAGCTTCTTTAGCCCTTTATATGCCAGGCTTGGCATAAACATATTTGTTTGCAATATGTTGGTTACTGAGATGCATAAAGCTTATTGA

Protein sequence

MVDTRESTSTPMIESDPDDDTPKSPPASPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVAITFFTTWWFVQFVDSFFSPLYARLGINIFVCNMLVTEMHKAY

Homology

[Close]

BLAST of Spg006562 vs. NCBI nr
Match: KAG7025150.1 (Protein LIKE COV 2 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 171.0 bits (432), Expect = 5.2e-39
Identity = 84/95 (88.42%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 1  MVDTRESTSTPMIESDPDDDTPKSPPASPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60
          MVD RESTS PMIESDPDDDTPKSPP SPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA
Sbjct: 1  MVDNRESTSVPMIESDPDDDTPKSPPTSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60

Query: 61 ITFFTTWWFVQFVDSFFSPLYARLGINIFVCNMLV 96
          ITFFTTWWF+ FVDSFFSPLYARLGINIF   +++
Sbjct: 61 ITFFTTWWFITFVDSFFSPLYARLGINIFGMTLMI 95

[Close]

BLAST of Spg006562 vs. NCBI nr
Match: XP_023534892.1 (protein LIKE COV 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 170.2 bits (430), Expect = 8.9e-39
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MVDTRESTSTPMIESDPDDDTPKSPPASPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60
          MVD RESTS PMIESDPDDDTPKSPP SPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA
Sbjct: 1  MVDNRESTSVPMIESDPDDDTPKSPPTSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60

Query: 61 ITFFTTWWFVQFVDSFFSPLYARLGINIF 90
          ITFFTTWWF+ FVDSFFSPLYARLGINIF
Sbjct: 61 ITFFTTWWFITFVDSFFSPLYARLGINIF 89

[Close]

BLAST of Spg006562 vs. NCBI nr
Match: XP_022925395.1 (protein LIKE COV 2-like [Cucurbita moschata])

HSP 1 Score: 170.2 bits (430), Expect = 8.9e-39
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MVDTRESTSTPMIESDPDDDTPKSPPASPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60
          MVD RESTS PMIESDPDDDTPKSPP SPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA
Sbjct: 1  MVDNRESTSVPMIESDPDDDTPKSPPTSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60

Query: 61 ITFFTTWWFVQFVDSFFSPLYARLGINIF 90
          ITFFTTWWF+ FVDSFFSPLYARLGINIF
Sbjct: 61 ITFFTTWWFITFVDSFFSPLYARLGINIF 89

[Close]

BLAST of Spg006562 vs. NCBI nr
Match: XP_022973505.1 (protein LIKE COV 2-like [Cucurbita maxima])

HSP 1 Score: 169.9 bits (429), Expect = 1.2e-38
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MVDTRESTSTPMIESDPDDDTPKSPPASPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60
          MVD RESTS PMIESDPDDDTPKSPP SPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA
Sbjct: 1  MVDNRESTSVPMIESDPDDDTPKSPPPSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60

Query: 61 ITFFTTWWFVQFVDSFFSPLYARLGINIF 90
          ITFFTTWWF+ FVDSFFSPLYARLGINIF
Sbjct: 61 ITFFTTWWFITFVDSFFSPLYARLGINIF 89

[Close]

BLAST of Spg006562 vs. NCBI nr
Match: XP_022151734.1 (protein LIKE COV 2-like [Momordica charantia])

HSP 1 Score: 167.2 bits (422), Expect = 7.6e-38
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MVDTRESTSTPMIESDPDDDTPKSPPASPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60
          M DTRESTSTPMIESDPDDDTPKSPP   NSSTRKACYAVLQSWVSKKFMTGCVVLFPVA
Sbjct: 1  MADTRESTSTPMIESDPDDDTPKSPPTFSNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60

Query: 61 ITFFTTWWFVQFVDSFFSPLYARLGINIF 90
          ITFF TWWF+QFVDSFFSPLYARLGINIF
Sbjct: 61 ITFFITWWFIQFVDSFFSPLYARLGINIF 89

[Close]

BLAST of Spg006562 vs. ExPASy Swiss-Prot
Match: Q9C8C1 (Protein LIKE COV 2 OS=Arabidopsis thaliana OX=3702 GN=LCV2 PE=2 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.8e-27
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MVDTRESTSTPMIE-----SDPDDDTPKSPPASPNSSTRKACYAVLQSWVSKKFMTGCVV 60
          M + +E+T++ + +      DP DD PKSPP SPNSSTRKACY VLQSWVSKKFMTG VV
Sbjct: 1  MAEGKEATTSSLSQGLTPHQDP-DDAPKSPPNSPNSSTRKACYGVLQSWVSKKFMTGFVV 60

Query: 61 LFPVAITFFTTWWFVQFVDSFFSPLYARLGINIF 90
          LFPVA+TF  TWWF+QFVD FFSP+Y  LG++IF
Sbjct: 61 LFPVAVTFLITWWFIQFVDGFFSPIYENLGVDIF 93

[Close]

BLAST of Spg006562 vs. ExPASy Swiss-Prot
Match: F4IQJ6 (Protein LIKE COV 3 OS=Arabidopsis thaliana OX=3702 GN=LCV3 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.4e-18
Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 22 PKSPPASP-NSSTRKACYAVLQSWVSKKFMTGCVVLFPVAITFFTTWWFVQFVDSFFSPL 81
          P SP ASP + + ++A Y V++SW SKKFMTGCV+L P+A+TF+ TWWF+ FVD FFSP+
Sbjct: 29 PPSPLASPIHVAGKEAIYKVIRSWASKKFMTGCVILLPIAVTFYFTWWFIHFVDGFFSPI 88

Query: 82 YARLGINIF 90
          Y  LGIN+F
Sbjct: 89 YTHLGINMF 97

[Close]

BLAST of Spg006562 vs. ExPASy Swiss-Prot
Match: F4IUE7 (Protein CONTINUOUS VASCULAR RING 1 OS=Arabidopsis thaliana OX=3702 GN=COV1 PE=1 SV=2)

HSP 1 Score: 88.2 bits (217), Expect = 5.9e-17
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 11  PMIESDPDDDTPKSPPASPNS-------STRKACYAVLQSWVSKKFMTGCVVLFPVAITF 70
           P+ +S   DD   S P+S +S       S+ +     ++ W SKKFMTGCV+L P+AITF
Sbjct: 22  PVADSGDKDDGSSSKPSSSSSASSSSHQSSHETLSLFIRGWASKKFMTGCVILLPIAITF 81

Query: 71  FTTWWFVQFVDSFFSPLYARLGINIF 90
           + TWWF+ FVD FFSP+YA+LGIN+F
Sbjct: 82  YITWWFIHFVDGFFSPIYAQLGINVF 107

[Close]

BLAST of Spg006562 vs. ExPASy Swiss-Prot
Match: Q8VY49 (Protein LIKE COV 1 OS=Arabidopsis thaliana OX=3702 GN=LCV1 PE=2 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 2.2e-16
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 11 PMIESDPDDDTPKSPPASPNS------STRKACYAVLQSWVSKKFMTGCVVLFPVAITFF 70
          P+ +    DD   S P+S +S      S  +     ++ W SKKFMTGCV+L P+A+TF+
Sbjct: 13 PVADFGDKDDGSSSKPSSSSSASSSHQSGHETLSLFIRGWASKKFMTGCVILLPIAVTFY 72

Query: 71 TTWWFVQFVDSFFSPLYARLGINIF 90
          TTWWF+ FVD FFSP+YA LGINIF
Sbjct: 73 TTWWFIHFVDGFFSPIYALLGINIF 97

[Close]

BLAST of Spg006562 vs. ExPASy TrEMBL
Match: A0A6J1EHU8 (protein LIKE COV 2-like OS=Cucurbita moschata OX=3662 GN=LOC111432697 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.3e-39
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MVDTRESTSTPMIESDPDDDTPKSPPASPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60
          MVD RESTS PMIESDPDDDTPKSPP SPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA
Sbjct: 1  MVDNRESTSVPMIESDPDDDTPKSPPTSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60

Query: 61 ITFFTTWWFVQFVDSFFSPLYARLGINIF 90
          ITFFTTWWF+ FVDSFFSPLYARLGINIF
Sbjct: 61 ITFFTTWWFITFVDSFFSPLYARLGINIF 89

[Close]

BLAST of Spg006562 vs. ExPASy TrEMBL
Match: A0A6J1IBI8 (protein LIKE COV 2-like OS=Cucurbita maxima OX=3661 GN=LOC111472043 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 5.7e-39
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MVDTRESTSTPMIESDPDDDTPKSPPASPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60
          MVD RESTS PMIESDPDDDTPKSPP SPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA
Sbjct: 1  MVDNRESTSVPMIESDPDDDTPKSPPPSPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60

Query: 61 ITFFTTWWFVQFVDSFFSPLYARLGINIF 90
          ITFFTTWWF+ FVDSFFSPLYARLGINIF
Sbjct: 61 ITFFTTWWFITFVDSFFSPLYARLGINIF 89

[Close]

BLAST of Spg006562 vs. ExPASy TrEMBL
Match: A0A6J1DDY4 (protein LIKE COV 2-like OS=Momordica charantia OX=3673 GN=LOC111019643 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.7e-38
Identity = 83/89 (93.26%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MVDTRESTSTPMIESDPDDDTPKSPPASPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60
          M DTRESTSTPMIESDPDDDTPKSPP   NSSTRKACYAVLQSWVSKKFMTGCVVLFPVA
Sbjct: 1  MADTRESTSTPMIESDPDDDTPKSPPTFSNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60

Query: 61 ITFFTTWWFVQFVDSFFSPLYARLGINIF 90
          ITFF TWWF+QFVDSFFSPLYARLGINIF
Sbjct: 61 ITFFITWWFIQFVDSFFSPLYARLGINIF 89

[Close]

BLAST of Spg006562 vs. ExPASy TrEMBL
Match: A0A0A0KDM8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017020 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.9e-36
Identity = 81/89 (91.01%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MVDTRESTSTPMIESDPDDDTPKSPPASPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60
          MVD RES S PMI+SDPDDDTPKSPP+SP+SSTRKACYAVLQSWVSKKFMTGCVVLFPVA
Sbjct: 1  MVDNRES-SAPMIDSDPDDDTPKSPPSSPSSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60

Query: 61 ITFFTTWWFVQFVDSFFSPLYARLGINIF 90
          ITFF TWWFVQFVDSFFSPLYARLGI+IF
Sbjct: 61 ITFFITWWFVQFVDSFFSPLYARLGIHIF 88

[Close]

BLAST of Spg006562 vs. ExPASy TrEMBL
Match: A0A1S4E423 (LOW QUALITY PROTEIN: protein LIKE COV 2 OS=Cucumis melo OX=3656 GN=LOC103501301 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 6.5e-35
Identity = 79/89 (88.76%), Postives = 84/89 (94.38%), Query Frame = 0


Query: 1  MVDTRESTSTPMIESDPDDDTPKSPPASPNSSTRKACYAVLQSWVSKKFMTGCVVLFPVA 60
          MVD RES S PMI+SDPD+DTPKSPP+SP+SSTRKACYAVLQ WVSKKFMTGCVVLFPVA
Sbjct: 1  MVDNRES-SAPMIDSDPDEDTPKSPPSSPSSSTRKACYAVLQXWVSKKFMTGCVVLFPVA 60

Query: 61 ITFFTTWWFVQFVDSFFSPLYARLGINIF 90
          ITFF TWWFVQFVDSFFSPLYARLGI+IF
Sbjct: 61 ITFFITWWFVQFVDSFFSPLYARLGIHIF 88

[Close]

BLAST of Spg006562 vs. TAIR 10
Match: AT1G43130.1 (like COV 2 )

HSP 1 Score: 121.7 bits (304), Expect = 3.4e-28
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = 0


Query: 1  MVDTRESTSTPMIE-----SDPDDDTPKSPPASPNSSTRKACYAVLQSWVSKKFMTGCVV 60
          M + +E+T++ + +      DP DD PKSPP SPNSSTRKACY VLQSWVSKKFMTG VV
Sbjct: 1  MAEGKEATTSSLSQGLTPHQDP-DDAPKSPPNSPNSSTRKACYGVLQSWVSKKFMTGFVV 60

Query: 61 LFPVAITFFTTWWFVQFVDSFFSPLYARLGINIF 90
          LFPVA+TF  TWWF+QFVD FFSP+Y  LG++IF
Sbjct: 61 LFPVAVTFLITWWFIQFVDGFFSPIYENLGVDIF 93

[Close]

BLAST of Spg006562 vs. TAIR 10
Match: AT2G18460.1 (like COV 3 )

HSP 1 Score: 92.8 bits (229), Expect = 1.7e-19
Identity = 42/69 (60.87%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 22 PKSPPASP-NSSTRKACYAVLQSWVSKKFMTGCVVLFPVAITFFTTWWFVQFVDSFFSPL 81
          P SP ASP + + ++A Y V++SW SKKFMTGCV+L P+A+TF+ TWWF+ FVD FFSP+
Sbjct: 29 PPSPLASPIHVAGKEAIYKVIRSWASKKFMTGCVILLPIAVTFYFTWWFIHFVDGFFSPI 88

Query: 82 YARLGINIF 90
          Y  LGIN+F
Sbjct: 89 YTHLGINMF 97

[Close]

BLAST of Spg006562 vs. TAIR 10
Match: AT2G20120.1 (Protein of unknown function (DUF502) )

HSP 1 Score: 88.2 bits (217), Expect = 4.2e-18
Identity = 43/86 (50.00%), Postives = 58/86 (67.44%), Query Frame = 0


Query: 11  PMIESDPDDDTPKSPPASPNS-------STRKACYAVLQSWVSKKFMTGCVVLFPVAITF 70
           P+ +S   DD   S P+S +S       S+ +     ++ W SKKFMTGCV+L P+AITF
Sbjct: 22  PVADSGDKDDGSSSKPSSSSSASSSSHQSSHETLSLFIRGWASKKFMTGCVILLPIAITF 81

Query: 71  FTTWWFVQFVDSFFSPLYARLGINIF 90
           + TWWF+ FVD FFSP+YA+LGIN+F
Sbjct: 82  YITWWFIHFVDGFFSPIYAQLGINVF 107

[Close]

BLAST of Spg006562 vs. TAIR 10
Match: AT2G20130.1 (like COV 1 )

HSP 1 Score: 86.3 bits (212), Expect = 1.6e-17
Identity = 43/85 (50.59%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 11 PMIESDPDDDTPKSPPASPNS------STRKACYAVLQSWVSKKFMTGCVVLFPVAITFF 70
          P+ +    DD   S P+S +S      S  +     ++ W SKKFMTGCV+L P+A+TF+
Sbjct: 13 PVADFGDKDDGSSSKPSSSSSASSSHQSGHETLSLFIRGWASKKFMTGCVILLPIAVTFY 72

Query: 71 TTWWFVQFVDSFFSPLYARLGINIF 90
          TTWWF+ FVD FFSP+YA LGINIF
Sbjct: 73 TTWWFIHFVDGFFSPIYALLGINIF 97

The following BLAST results are available for this feature:

BLAST of Spg006562 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7025150.1	5.2e-39	88.42	Protein LIKE COV 2 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_023534892.1	8.9e-39	94.38	protein LIKE COV 2-like [Cucurbita pepo subsp. pepo]	[more]
XP_022925395.1	8.9e-39	94.38	protein LIKE COV 2-like [Cucurbita moschata]	[more]
XP_022973505.1	1.2e-38	94.38	protein LIKE COV 2-like [Cucurbita maxima]	[more]
XP_022151734.1	7.6e-38	93.26	protein LIKE COV 2-like [Momordica charantia]	[more]

BLAST of Spg006562 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C8C1	4.8e-27	65.96	Protein LIKE COV 2 OS=Arabidopsis thaliana OX=3702 GN=LCV2 PE=2 SV=1	[more]
F4IQJ6	2.4e-18	60.87	Protein LIKE COV 3 OS=Arabidopsis thaliana OX=3702 GN=LCV3 PE=2 SV=1	[more]
F4IUE7	5.9e-17	50.00	Protein CONTINUOUS VASCULAR RING 1 OS=Arabidopsis thaliana OX=3702 GN=COV1 PE=1 ...	[more]
Q8VY49	2.2e-16	50.59	Protein LIKE COV 1 OS=Arabidopsis thaliana OX=3702 GN=LCV1 PE=2 SV=1	[more]

BLAST of Spg006562 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EHU8	4.3e-39	94.38	protein LIKE COV 2-like OS=Cucurbita moschata OX=3662 GN=LOC111432697 PE=4 SV=1	[more]
A0A6J1IBI8	5.7e-39	94.38	protein LIKE COV 2-like OS=Cucurbita maxima OX=3661 GN=LOC111472043 PE=4 SV=1	[more]
A0A6J1DDY4	3.7e-38	93.26	protein LIKE COV 2-like OS=Momordica charantia OX=3673 GN=LOC111019643 PE=4 SV=1	[more]
A0A0A0KDM8	5.9e-36	91.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G017020 PE=4 SV=1	[more]
A0A1S4E423	6.5e-35	88.76	LOW QUALITY PROTEIN: protein LIKE COV 2 OS=Cucumis melo OX=3656 GN=LOC103501301 ...	[more]

BLAST of Spg006562 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43130.1	3.4e-28	65.96	like COV 2	[more]
AT2G18460.1	1.7e-19	60.87	like COV 3	[more]
AT2G20120.1	4.2e-18	50.00	Protein of unknown function (DUF502)	[more]
AT2G20130.1	1.6e-17	50.59	like COV 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..15
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	PANTHER	PTHR31876	COV-LIKE PROTEIN 1	coord: 1..94
None	No IPR available	PANTHER	PTHR31876:SF26	PROTEIN LIKE COV 2	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006562.1	Spg006562.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane