Spg006399 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg006399
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111022007
Locationscaffold2: 48783392 .. 48784462 (+)
RNA-Seq ExpressionSpg006399
SyntenySpg006399
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAAACAAGAGGCCGTAAAGAAAGGGATATAGAGGAAGAGCTACCCACTACGCCTGAAGTTCCGAAGAAGAAAGTCAAAAAGAAAAGGACTCCGACAGAAAAAGAAGCCAAGAGATTGAGGAAACAGCAGGAAGCTGAGGTTTCCGAAATTCTGGAGAAAACTGTAGAAGAAATTGCAACGGAGGTGATAACGGAGGAAGAACCGAAAGAACCAGAAAAAGAAAAGTTCCTGAGAAGACGACAGAGGTGGAAGAAAATGTCCAACAAACAGATCATGGTAACACGGAACCAGCAGTACAGGAGGTTCAGGAAGCAATAGTTCAGATTCCATTGTGTCGTCGCCGTCGCAAACAGAAAGAGAGGAAGCTGCAAAGAAGGTAGAGGAAGAAGCCCTGACGAAGCAAAGAGAAGACAAGGGCAAAAGAGTTGCTGAAGCTCCGGCAGAGGCAGAGGAGGCTGCAATGAGGAACTGAGACTGCCGTATGATCGCTTCATCAACAATCTTGCCAGAGCAAAATATAGGGAGATGCTGAAAAGAGATTTCTTGTTTGAAAGAGGCTTCGGTGAGGACTTACCACACTCTTTGAGGGCTGGACTTGCAAACCACGGATGGAGTCAATTCTGCGCAAAACTAGAATCGGTAAATTCAAATATTGTCCGCGAATTCTACGTGAACATAGATGATCAGGAGGGATTCCAAGCCATGGTCTGAGGGGTAGTTGTCGATTGGAGCCCAGGAGCGGTAAATTCTCTCTTCAACCTCCAGGATTTTCCACATGCTGGATTTAATGAGATGGTGGTGGCACCATCCAATGATCAATTGAACGCGGCCGTCCGAGAGGTTGGTATTGAAGGGGCCCAATGGAGATTGTCGAAGACGGAGAAACGCACATTCCAAGCAGCCTATTTGAAGAGTGAGGCTAACACATGGTTGGGCTTCATTAAGCTGCGTTTGCTCCCGACAACTCATGATTCAACAGTATCCCGGGATAGAGTGCTACTGGTGTTTGCCATTCTGCGATCCTTGAGTATAGATGTGGGTAAGATTATTTCAAGTGAAATTTAG

mRNA sequence

ATGGCGAAAACAAGAGGCCGTAAAGAAAGGGATATAGAGGAAGAGCTACCCACTACGCCTGAAGTTCCGAAGAAGAAAGTCAAAAAGAAAAGGACTCCGACAGAAAAAGAAGCCAAGAGATTGAGGAAACAGCAGGAAGCTGAGGTTTCCGAAATTCTGGAGAAAACTGTAGAAGAAATTGCAACGGAGGTGATAACGGAGGAAGAACCGAAAGAACCAGAAAAAGAAAAGTTCCTGAGAAGACGACAGAGGTGGAAGAAAATGTCCAACAAACAGATCATGGTAACACGGAACCAGCAGTACAGGAGAGGCAGAGGAGGCTGCAATGAGGAACTGAGACTGCCGTATGATCGCTTCATCAACAATCTTGCCAGAGCAAAATATAGGGAGATGCTGAAAAGAGATTTCTTGTTTGAAAGAGGCTTCGGTGAGGACTTACCACACTCTTTGAGGGCTGGACTTGCAAACCACGGATGGAGTCAATTCTGCGCAAAACTAGAATCGGATTTTCCACATGCTGGATTTAATGAGATGGTGGTGGCACCATCCAATGATCAATTGAACGCGGCCGTCCGAGAGGTTGGTATTGAAGGGGCCCAATGGAGATTGTCGAAGACGGAGAAACGCACATTCCAAGCAGCCTATTTGAAGAGTGAGGCTAACACATGGTTGGGCTTCATTAAGCTGCGTTTGCTCCCGACAACTCATGATTCAACAGTATCCCGGGATAGAGTGCTACTGGTGTTTGCCATTCTGCGATCCTTGAGTATAGATGTGGGTAAGATTATTTCAAGTGAAATTTAG

Coding sequence (CDS)

ATGGCGAAAACAAGAGGCCGTAAAGAAAGGGATATAGAGGAAGAGCTACCCACTACGCCTGAAGTTCCGAAGAAGAAAGTCAAAAAGAAAAGGACTCCGACAGAAAAAGAAGCCAAGAGATTGAGGAAACAGCAGGAAGCTGAGGTTTCCGAAATTCTGGAGAAAACTGTAGAAGAAATTGCAACGGAGGTGATAACGGAGGAAGAACCGAAAGAACCAGAAAAAGAAAAGTTCCTGAGAAGACGACAGAGGTGGAAGAAAATGTCCAACAAACAGATCATGGTAACACGGAACCAGCAGTACAGGAGAGGCAGAGGAGGCTGCAATGAGGAACTGAGACTGCCGTATGATCGCTTCATCAACAATCTTGCCAGAGCAAAATATAGGGAGATGCTGAAAAGAGATTTCTTGTTTGAAAGAGGCTTCGGTGAGGACTTACCACACTCTTTGAGGGCTGGACTTGCAAACCACGGATGGAGTCAATTCTGCGCAAAACTAGAATCGGATTTTCCACATGCTGGATTTAATGAGATGGTGGTGGCACCATCCAATGATCAATTGAACGCGGCCGTCCGAGAGGTTGGTATTGAAGGGGCCCAATGGAGATTGTCGAAGACGGAGAAACGCACATTCCAAGCAGCCTATTTGAAGAGTGAGGCTAACACATGGTTGGGCTTCATTAAGCTGCGTTTGCTCCCGACAACTCATGATTCAACAGTATCCCGGGATAGAGTGCTACTGGTGTTTGCCATTCTGCGATCCTTGAGTATAGATGTGGGTAAGATTATTTCAAGTGAAATTTAG

Protein sequence

MAKTRGRKERDIEEELPTTPEVPKKKVKKKRTPTEKEAKRLRKQQEAEVSEILEKTVEEIATEVITEEEPKEPEKEKFLRRRQRWKKMSNKQIMVTRNQQYRRGRGGCNEELRLPYDRFINNLARAKYREMLKRDFLFERGFGEDLPHSLRAGLANHGWSQFCAKLESDFPHAGFNEMVVAPSNDQLNAAVREVGIEGAQWRLSKTEKRTFQAAYLKSEANTWLGFIKLRLLPTTHDSTVSRDRVLLVFAILRSLSIDVGKIISSEI
Homology
BLAST of Spg006399 vs. NCBI nr
Match: EOY13933.1 (Uncharacterized protein TCM_032752 [Theobroma cacao])

HSP 1 Score: 76.3 bits (186), Expect = 4.6e-10
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 188 NAAVREVGIEGAQWRLSKTEKRTFQAAYLKSEANTWLGFIKLRLLPTTHDSTVSRDRVLL 247
           N  +  + IEGAQW+ S  E  +F+ + +K E   WL F+  RLLP+TH S V++DR +L
Sbjct: 131 NEIISTLCIEGAQWKTSHGEPVSFKRSVMKKELKVWLHFVAARLLPSTHISDVTKDRAVL 190

Query: 248 VFAILRSLSIDVGKIISSEI 268
           ++AI+   SIDVGK+IS  I
Sbjct: 191 IYAIVTHKSIDVGKVISHAI 210

BLAST of Spg006399 vs. NCBI nr
Match: XP_022154847.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 5.1e-09
Identity = 41/155 (26.45%), Postives = 76/155 (49.03%), Query Frame = 0

Query: 134  RDFLFERGFG---EDLPHSLRAGLANHGWSQFCAKL------------------ESDFPH 193
            RD L ERGF    E +P  +R  +  +GW    A +                    D   
Sbjct: 1125 RDILLERGFDEAQEPVPEYVRKRIVENGWETLFAPITRVSEALVKEFYTAINPNRGDEVR 1184

Query: 194  AGFNEMVVAPSNDQLNAAVREVGIEGAQWRLSKTEKRTFQAAYLKSEANTWLGFIKLRLL 253
               NE++V PS++Q+  A R +      W +S   K + +   +  +A  W+  +K RL+
Sbjct: 1185 VRGNEILVHPSDEQVEEARRLICRPHKTWTISTMGKLSLKPLDINEQATVWMYVVKNRLI 1244

Query: 254  PTTHDSTVSRDRVLLVFAILRSLSIDVGKIISSEI 268
            PT++DS++ R+R ++V+ +++ +  + G++I +EI
Sbjct: 1245 PTSYDSSIKRNRAMIVYILVKGVEFNFGELIRNEI 1279

BLAST of Spg006399 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 72.8 bits (177), Expect = 5.1e-09
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0

Query: 176 NEMVVAPSNDQLNAAVREVGIEGAQWRLSKTEKRTFQAAYLKSEANTWLGFIKLRLLPTT 235
           +E V A +  +L   +  V I GA+W +S     T   + L   A  W  F+K RLLPTT
Sbjct: 37  SEFVEAITEPELATVLETVAIAGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTT 96

Query: 236 HDSTVSRDRVLLVFAILRSLSIDVGKIISSEI 268
           H  TVS++RVLL++++L   SI+VG+II  EI
Sbjct: 97  HGKTVSKERVLLLYSMLTGKSINVGQIIHREI 128

BLAST of Spg006399 vs. NCBI nr
Match: EXC33712.1 (hypothetical protein L484_008956 [Morus notabilis])

HSP 1 Score: 71.6 bits (174), Expect = 1.1e-08
Identity = 47/155 (30.32%), Postives = 80/155 (51.61%), Query Frame = 0

Query: 118 RFINNLARAKY-REMLKRDFLFERGF---GEDLPHSLRAGLANHGWSQFCAKLESDFPHA 177
           RF++  A  +Y R    +  + ERGF     +LP  +   + + GW +FC++     P A
Sbjct: 42  RFVSKDAETQYERHNKSQACIRERGFDTRNGELPPDIMNVIRDRGWEKFCSE-----PVA 101

Query: 178 GFNEMVVAPSNDQLNAAVREVGIEG-AQWRLSKTEKRTFQAAYLKSEANTWLGFIKLRLL 237
             ++    P  D     + E   +G A+W + +  +  F+A YL +    W  F+  RL+
Sbjct: 102 SPDQQQNLPDRDP--QEILEALCDGPARWTIKQNTESAFEARYLANYTKVWFHFVCTRLI 161

Query: 238 PTTHDSTVSRDRVLLVFAILRSLSIDVGKIISSEI 268
           P+TH S V++DR L++ AI +   ++VG II+S I
Sbjct: 162 PSTHISEVTKDRALVLLAIEKGEPLNVGAIINSGI 189

BLAST of Spg006399 vs. NCBI nr
Match: EOY08849.1 (Uncharacterized protein TCM_024087 [Theobroma cacao])

HSP 1 Score: 71.2 bits (173), Expect = 1.5e-08
Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = 0

Query: 159 WSQFCAKLESDFPHAGFNEMVVAPSNDQLNAAVRE-----VGIEGAQWRLSKTEKRTFQA 218
           W QFC + ++           V P   +  A V E       + GAQW+ S  E  +F+ 
Sbjct: 62  WCQFCHQPDA----------TVVPVVREFYANVVEHVDGVAFVRGAQWKTSHDEPVSFKR 121

Query: 219 AYLKSEANTWLGFIKLRLLPTTHDSTVSRDRVLLVFAILRSLSIDVGKIISSEI 268
           + +K E   WL F+  RLL +TH S V++DR +L++AI+   SIDVGK+IS  I
Sbjct: 122 SVMKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHKSIDVGKVISHAI 165

BLAST of Spg006399 vs. ExPASy TrEMBL
Match: A0A061FAJ6 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_032752 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.2e-10
Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 0

Query: 188 NAAVREVGIEGAQWRLSKTEKRTFQAAYLKSEANTWLGFIKLRLLPTTHDSTVSRDRVLL 247
           N  +  + IEGAQW+ S  E  +F+ + +K E   WL F+  RLLP+TH S V++DR +L
Sbjct: 131 NEIISTLCIEGAQWKTSHGEPVSFKRSVMKKELKVWLHFVAARLLPSTHISDVTKDRAVL 190

Query: 248 VFAILRSLSIDVGKIISSEI 268
           ++AI+   SIDVGK+IS  I
Sbjct: 191 IYAIVTHKSIDVGKVISHAI 210

BLAST of Spg006399 vs. ExPASy TrEMBL
Match: A0A2P5CPE8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.5e-09
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0

Query: 176 NEMVVAPSNDQLNAAVREVGIEGAQWRLSKTEKRTFQAAYLKSEANTWLGFIKLRLLPTT 235
           +E V A +  +L   +  V I GA+W +S     T   + L   A  W  F+K RLLPTT
Sbjct: 37  SEFVEAITEPELATVLETVAIAGAEWNVSSQGAYTCLRSSLNPPAKVWYHFLKSRLLPTT 96

Query: 236 HDSTVSRDRVLLVFAILRSLSIDVGKIISSEI 268
           H  TVS++RVLL++++L   SI+VG+II  EI
Sbjct: 97  HGKTVSKERVLLLYSMLTGKSINVGQIIHREI 128

BLAST of Spg006399 vs. ExPASy TrEMBL
Match: A0A6J1DMT3 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia OX=3673 GN=LOC111022007 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.5e-09
Identity = 41/155 (26.45%), Postives = 76/155 (49.03%), Query Frame = 0

Query: 134  RDFLFERGFG---EDLPHSLRAGLANHGWSQFCAKL------------------ESDFPH 193
            RD L ERGF    E +P  +R  +  +GW    A +                    D   
Sbjct: 1125 RDILLERGFDEAQEPVPEYVRKRIVENGWETLFAPITRVSEALVKEFYTAINPNRGDEVR 1184

Query: 194  AGFNEMVVAPSNDQLNAAVREVGIEGAQWRLSKTEKRTFQAAYLKSEANTWLGFIKLRLL 253
               NE++V PS++Q+  A R +      W +S   K + +   +  +A  W+  +K RL+
Sbjct: 1185 VRGNEILVHPSDEQVEEARRLICRPHKTWTISTMGKLSLKPLDINEQATVWMYVVKNRLI 1244

Query: 254  PTTHDSTVSRDRVLLVFAILRSLSIDVGKIISSEI 268
            PT++DS++ R+R ++V+ +++ +  + G++I +EI
Sbjct: 1245 PTSYDSSIKRNRAMIVYILVKGVEFNFGELIRNEI 1279

BLAST of Spg006399 vs. ExPASy TrEMBL
Match: W9SAV1 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008956 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 5.5e-09
Identity = 47/155 (30.32%), Postives = 80/155 (51.61%), Query Frame = 0

Query: 118 RFINNLARAKY-REMLKRDFLFERGF---GEDLPHSLRAGLANHGWSQFCAKLESDFPHA 177
           RF++  A  +Y R    +  + ERGF     +LP  +   + + GW +FC++     P A
Sbjct: 42  RFVSKDAETQYERHNKSQACIRERGFDTRNGELPPDIMNVIRDRGWEKFCSE-----PVA 101

Query: 178 GFNEMVVAPSNDQLNAAVREVGIEG-AQWRLSKTEKRTFQAAYLKSEANTWLGFIKLRLL 237
             ++    P  D     + E   +G A+W + +  +  F+A YL +    W  F+  RL+
Sbjct: 102 SPDQQQNLPDRDP--QEILEALCDGPARWTIKQNTESAFEARYLANYTKVWFHFVCTRLI 161

Query: 238 PTTHDSTVSRDRVLLVFAILRSLSIDVGKIISSEI 268
           P+TH S V++DR L++ AI +   ++VG II+S I
Sbjct: 162 PSTHISEVTKDRALVLLAIEKGEPLNVGAIINSGI 189

BLAST of Spg006399 vs. ExPASy TrEMBL
Match: A0A061F2U9 (Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_024087 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 7.2e-09
Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = 0

Query: 159 WSQFCAKLESDFPHAGFNEMVVAPSNDQLNAAVRE-----VGIEGAQWRLSKTEKRTFQA 218
           W QFC + ++           V P   +  A V E       + GAQW+ S  E  +F+ 
Sbjct: 62  WCQFCHQPDA----------TVVPVVREFYANVVEHVDGVAFVRGAQWKTSHDEPVSFKR 121

Query: 219 AYLKSEANTWLGFIKLRLLPTTHDSTVSRDRVLLVFAILRSLSIDVGKIISSEI 268
           + +K E   WL F+  RLL +TH S V++DR +L++AI+   SIDVGK+IS  I
Sbjct: 122 SVMKKELQVWLHFVAARLLSSTHISDVTKDRAVLIYAIVAHKSIDVGKVISHAI 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
EOY13933.14.6e-1046.25Uncharacterized protein TCM_032752 [Theobroma cacao][more]
XP_022154847.15.1e-0926.45LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 [Momordica charantia][more]
PON62892.15.1e-0942.39hypothetical protein PanWU01x14_135680 [Parasponia andersonii][more]
EXC33712.11.1e-0830.32hypothetical protein L484_008956 [Morus notabilis][more]
EOY08849.11.5e-0836.84Uncharacterized protein TCM_024087 [Theobroma cacao][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A061FAJ62.2e-1046.25Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_032752 PE=4 SV=1[more]
A0A2P5CPE82.5e-0942.39Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE... [more]
A0A6J1DMT32.5e-0926.45LOW QUALITY PROTEIN: uncharacterized protein LOC111022007 OS=Momordica charantia... [more]
W9SAV15.5e-0930.32Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_008956 PE=4 SV=1[more]
A0A061F2U97.2e-0936.84Uncharacterized protein OS=Theobroma cacao OX=3641 GN=TCM_024087 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 35..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg006399.1Spg006399.1mRNA