Spg006350 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006350
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Exopolygalacturonase-like
Location	scaffold4: 5597823 .. 5599504 (-)
RNA-Seq Expression	Spg006350
Synteny	Spg006350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGTTAGCAATCTGAACAAGGAGAAAATAAACAAAGTAGAAGGTATATACATAAAGAATGGGATCCAGAACAGACTTTGTAGCATTACTACCTTTGCTATTATTGTTGGTGTCTACTGCTAAAGGTCAATCGGTTTTTGATGTCACTAAGTATGGTGCCAAATCGAATGCTGATATTACTCAAGTAAGTATATATTAGTAATTTGATAAACCACTTTAATTTATAATGAAATATTTTAATCTGATATGATGAAATAATTCAATTTACAGGCTTTAGCAAATGCATGGAAGGAAGCATGTGCGTCAACAAGTCCAAGTAAAGTGTTGGCTCCAAAAGGAGTTTACCAAGTAAGTCAATCCAACCTCAAAAGCCCTTGCAAGAGTCCTATTGAGTTTCAAGTCGAAGGGACGTTACAAGCTCCTGCCCATCCAAAAGGAGATGGGTTGGTTCTTTTAGAATATATTGATCAATTGACATTGTCAGGCACTGGAGTTTTTGATGGCCAAGGAAAAGCAGGTTGGGAAAAGAATGATTGCCACCAAAAGAAATTATATGTACCAAGCTTCCCATGGTAAACGCTCTAACTATAGTGGTCTTTTGTTTTTGGCCTAATATCATACATTATTTAATCACAAATAATCTCAATTAACCTAAGTGTTTTAACTCCGAAAGTTTTTTTTTTTTTTTTTTTTAATGAGCGCAGACCTTGAAGTTCAATTTCGTCACCAATTCGTTAGTGAAGGACATAACTTCATTGGATAGTAAGAATTTCCATATCAATCTTTTGGGCTGCAAGAATCTTACTTTTCAACACGTGACAATTACTGCACCAGAGGATAGCCCCAACACGGACGGAATTCATCTGAGTAGTTCATAACAGATTAACATTCTCGATACTAAAATCGCTACTGGAGATGATTGTGTATCTGTAGGAGATAGTAACAAACAAATAACTATTACTAACGTAACTTGCGGACCAGGACATGGCATTAGCATAGGAAGTTTGGGCAAGTACACAAAGGAAAAAGACGTGGTTGGAGTTTTCGTGAAAAAATGCAAAATAATGAGTACTACAAATGGTGTCCGGATCAAAACATGGTCAGATTCTACTGGTGCATTCTCAGCCACTGACATGCATTTTGAAGATATTGAAATGGTTAATGTCAGCAATCCGGTCATTATAGACCAAGAATATTGTCCATGGAATCAATGCAACCGAAAGGTATATATATGTCGGAATTATTAATTATGTTTCATTCATTTTCAACTTATTATTAACTTTAAGAAGTATTATAAAAAAAATTTTAAAAAAAAAATTGCTAAGTTGAGTTTTTCTTATGTGAATAAATATATATTTTTTTTTTACCTTTAGGTTGCATCAAAAATTAAGATTAGCAAAGTTAGCTTCAAGAATATCAAGGGCACTTCTGCTACTCCAGTCGCGGTCAAACTTGTTTGCAGCAAAAGTCTACCATGTGAAGGTATAGAAGTTGTTGATATTGACCTCACTTATAGTGGAACCCAAGGACCGATTAAGTCTCAGTGTTCAAATGTGAAACCCACCATTACTGGAAAGCAAAACCCTCCCATATGTGCTGAACCTGCCCCTGTTGATTCTCCATCAACTGACTAATATTTTTCACAATGACAAAAAATTTCCAAACCATTAGATTTTTTTTATT

mRNA sequence

ATGGGATCCAGAACAGACTTTGTAGCATTACTACCTTTGCTATTATTGTTGGTGTCTACTGCTAAAGGTCAATCGGTTTTTGATGTCACTAAGTATGGTGCCAAATCGAATGCTGATATTACTCAAGCTTTAGCAAATGCATGGAAGGAAGCATGTGCGTCAACAAGTCCAAGTAAAGTGTTGGCTCCAAAAGGAGTTTACCAAGTAAGTCAATCCAACCTCAAAAGCCCTTGCAAGAGTCCTATTGAGTTTCAAGTCGAAGGGACGTTACAAGCTCCTGCCCATCCAAAAGGAGATGGGTTGGTTCTTTTAGAATATATTGATCAATTGACATTGTCAGGCACTGGAGTTTTTGATGGCCAAGGAAAAGCAGGACATGGCATTAGCATAGGAAGTTTGGGCAAGTACACAAAGGAAAAAGACGTGGTTGGAGTTTTCGTGAAAAAATGCAAAATAATGAGTACTACAAATGGTGTCCGGATCAAAACATGGTCAGATTCTACTGGTGCATTCTCAGCCACTGACATGCATTTTGAAGATATTGAAATGGTTAATGTCAGCAATCCGGTCATTATAGACCAAGAATATTGTCCATGGAATCAATGCAACCGAAAGGTTGCATCAAAAATTAAGATTAGCAAAGTTAGCTTCAAGAATATCAAGGGCACTTCTGCTACTCCAGTCGCGGTCAAACTTGTTTGCAGCAAAAGTCTACCATGTGAAGGTATAGAAGTTGTTGATATTGACCTCACTTATAGTGGAACCCAAGGACCGATTAAGTCTCAGTGTTCAAATGTGAAACCCACCATTACTGGAAAGCAAAACCCTCCCATATGTGCTGAACCTGCCCCTGTTGATTCTCCATCAACTGACTAA

Coding sequence (CDS)

ATGGGATCCAGAACAGACTTTGTAGCATTACTACCTTTGCTATTATTGTTGGTGTCTACTGCTAAAGGTCAATCGGTTTTTGATGTCACTAAGTATGGTGCCAAATCGAATGCTGATATTACTCAAGCTTTAGCAAATGCATGGAAGGAAGCATGTGCGTCAACAAGTCCAAGTAAAGTGTTGGCTCCAAAAGGAGTTTACCAAGTAAGTCAATCCAACCTCAAAAGCCCTTGCAAGAGTCCTATTGAGTTTCAAGTCGAAGGGACGTTACAAGCTCCTGCCCATCCAAAAGGAGATGGGTTGGTTCTTTTAGAATATATTGATCAATTGACATTGTCAGGCACTGGAGTTTTTGATGGCCAAGGAAAAGCAGGACATGGCATTAGCATAGGAAGTTTGGGCAAGTACACAAAGGAAAAAGACGTGGTTGGAGTTTTCGTGAAAAAATGCAAAATAATGAGTACTACAAATGGTGTCCGGATCAAAACATGGTCAGATTCTACTGGTGCATTCTCAGCCACTGACATGCATTTTGAAGATATTGAAATGGTTAATGTCAGCAATCCGGTCATTATAGACCAAGAATATTGTCCATGGAATCAATGCAACCGAAAGGTTGCATCAAAAATTAAGATTAGCAAAGTTAGCTTCAAGAATATCAAGGGCACTTCTGCTACTCCAGTCGCGGTCAAACTTGTTTGCAGCAAAAGTCTACCATGTGAAGGTATAGAAGTTGTTGATATTGACCTCACTTATAGTGGAACCCAAGGACCGATTAAGTCTCAGTGTTCAAATGTGAAACCCACCATTACTGGAAAGCAAAACCCTCCCATATGTGCTGAACCTGCCCCTGTTGATTCTCCATCAACTGACTAA

Protein sequence

MGSRTDFVALLPLLLLLVSTAKGQSVFDVTKYGAKSNADITQALANAWKEACASTSPSKVLAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHPKGDGLVLLEYIDQLTLSGTGVFDGQGKAGHGISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRKVASKIKISKVSFKNIKGTSATPVAVKLVCSKSLPCEGIEVVDIDLTYSGTQGPIKSQCSNVKPTITGKQNPPICAEPAPVDSPSTD

Homology

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BLAST of Spg006350 vs. NCBI nr
Match: XP_011652893.2 (exopolygalacturonase [Cucumis sativus] >KGN64588.2 hypothetical protein Csa_014082 [Cucumis sativus])

HSP 1 Score: 426.8 bits (1096), Expect = 1.5e-115
Identity = 236/406 (58.13%), Postives = 257/406 (63.30%), Query Frame = 0


Query: 1   MGSRTDFVALLPLLLLLVSTAKGQS-----VFDVTKYGAKSNADITQALANAWKEACAST 60
           MG R++FV LLPL LLLVS AKGQS     VFDVT +GAK N DIT  L  AWK+ACAST
Sbjct: 1   MGLRSNFVTLLPLFLLLVSNAKGQSAAGGGVFDVTSFGAKPNGDITGPLLVAWKDACAST 60

Query: 61  SPSKVLAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHPKGDGLVLLEYIDQLTLSGT 120
           +PSKVL PKG Y +SQSNLK PCKSPIE Q+EGTLQA   PKGDGL+LLEYIDQLT+SGT
Sbjct: 61  TPSKVLIPKGSYGLSQSNLKGPCKSPIELQIEGTLQASPDPKGDGLLLLEYIDQLTVSGT 120

Query: 121 GVFDGQGKA--------------------------------------------------- 180
           GV DGQGKA                                                   
Sbjct: 121 GVLDGQGKAGWEKNDCHLKKICTKLPMTLKLNFITNSIVKDITSLDSKNYHINLLGCKNL 180

Query: 181 -----------------------------------------------------------G 240
                                                                      G
Sbjct: 181 TIDHVTITAPENSPNTDGIHVSSSEQINILNTNIATGDDCISVGDTNKQIVISDVTCGPG 240

Query: 241 HGISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVN 292
           HGISIGSLGKY+KEK+VVGV VKKCK+ STTNGVRIKTW DS G F ATDMHFEDIEMVN
Sbjct: 241 HGISIGSLGKYSKEKEVVGVTVKKCKLTSTTNGVRIKTWPDSVGTFPATDMHFEDIEMVN 300

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BLAST of Spg006350 vs. NCBI nr
Match: KAA0045593.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK28803.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 426.8 bits (1096), Expect = 1.5e-115
Identity = 234/404 (57.92%), Postives = 260/404 (64.36%), Query Frame = 0


Query: 1   MGSRTDFVALLPLLLLLVSTAKGQ---SVFDVTKYGAKSNADITQALANAWKEACASTSP 60
           MG  ++FVALLP+LLLLVS +K Q   SVFD+TKYGAK NAD+T AL +AWKEACAST+P
Sbjct: 1   MGLISNFVALLPVLLLLVSNSKAQSSGSVFDITKYGAKPNADVTAALVSAWKEACASTTP 60

Query: 61  SKVLAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHPKGDGLVLLEYIDQLTLSGTGV 120
           SKVL PKG Y +SQSNLK PCKS IE Q+EGTLQAPA PKGDGL+LLEY+DQLT+SGTGV
Sbjct: 61  SKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPKGDGLLLLEYVDQLTVSGTGV 120

Query: 121 FDGQGKA----------------------------------------------------- 180
            DGQGKA                                                     
Sbjct: 121 LDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTF 180

Query: 181 ---------------------------------------------------------GHG 240
                                                                    GHG
Sbjct: 181 DHVTITAPGNSPNTDGIHVSSSEQINILNTNIATGDDCISVGDTNKQVVISDVTCGPGHG 240

Query: 241 ISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVS 292
           ISIGSLGKY+KEK+VVGV VKKCK+  TTNGVRIKTW DS  AF A+DMHFEDIEMVNVS
Sbjct: 241 ISIGSLGKYSKEKEVVGVTVKKCKLTDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVS 300

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BLAST of Spg006350 vs. NCBI nr
Match: KAA0045608.1 (exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02648.1 exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 426.8 bits (1096), Expect = 1.5e-115
Identity = 234/404 (57.92%), Postives = 260/404 (64.36%), Query Frame = 0


Query: 1   MGSRTDFVALLPLLLLLVSTAKGQS---VFDVTKYGAKSNADITQALANAWKEACASTSP 60
           MG  ++FV LLP+LLLLVS +K QS   VFD+TKYGAK NAD+T ALA+AWKEACAST+P
Sbjct: 1   MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTP 60

Query: 61  SKVLAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHPKGDGLVLLEYIDQLTLSGTGV 120
           SKVL PKG Y +SQSNLK PCKS IE Q+EGTLQAPA PKGDGL+LLEY+DQLT+SGTGV
Sbjct: 61  SKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPKGDGLLLLEYVDQLTVSGTGV 120

Query: 121 FDGQGKA----------------------------------------------------- 180
            DGQGKA                                                     
Sbjct: 121 LDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTF 180

Query: 181 ---------------------------------------------------------GHG 240
                                                                    GHG
Sbjct: 181 DHVTITAPGNSPNTDGIHVSSSEQINILNTNIATGDDCISVGDTNKQVVISDVTCGPGHG 240

Query: 241 ISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVS 292
           ISIGSLGKY+KEK+VVGV VKKCK+  TTNGVRIKTW DS  AF A+DMHFEDIEMVNVS
Sbjct: 241 ISIGSLGKYSKEKEVVGVTVKKCKLTDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVS 300

[Close]

BLAST of Spg006350 vs. NCBI nr
Match: KAA0045594.1 (exopolygalacturonase-like [Cucumis melo var. makuwa])

HSP 1 Score: 425.2 bits (1092), Expect = 4.4e-115
Identity = 234/404 (57.92%), Postives = 260/404 (64.36%), Query Frame = 0


Query: 1   MGSRTDFVALLPLLLLLVSTAKGQS---VFDVTKYGAKSNADITQALANAWKEACASTSP 60
           MG  ++FVALL +LLLLVS +K QS   VFD+TKYGAK NAD+T ALA+AWKEACAST+P
Sbjct: 1   MGLISNFVALLSVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTP 60

Query: 61  SKVLAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHPKGDGLVLLEYIDQLTLSGTGV 120
           SKVL PKG Y +SQSNLK PCKS IE Q+EGTLQAPA PKGDGL+LLEY+DQLT+SGTGV
Sbjct: 61  SKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPKGDGLLLLEYVDQLTVSGTGV 120

Query: 121 FDGQGKA----------------------------------------------------- 180
            DGQGKA                                                     
Sbjct: 121 LDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTF 180

Query: 181 ---------------------------------------------------------GHG 240
                                                                    GHG
Sbjct: 181 DHVTITAPGNSPNTDGIHVSSSEQINILNTNIATGDDCISVGDTNKQVVISDVTCGPGHG 240

Query: 241 ISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVS 292
           ISIGSLGKY+KEK+VVGV VKKCK+  TTNGVRIKTW DS  AF A+DMHFEDIEMVNVS
Sbjct: 241 ISIGSLGKYSKEKEVVGVTVKKCKLTDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVS 300

[Close]

BLAST of Spg006350 vs. NCBI nr
Match: XP_038895545.1 (exopolygalacturonase-like [Benincasa hispida])

HSP 1 Score: 421.4 bits (1082), Expect = 6.4e-114
Identity = 230/403 (57.07%), Postives = 260/403 (64.52%), Query Frame = 0


Query: 1   MGSRTDFVALLPLLLLLVSTAKGQS--VFDVTKYGAKSNADITQALANAWKEACASTSPS 60
           MG R++F+AL+PLLLLLVS AK QS  +FDVT +GAK N DIT ALA AWK ACAST+PS
Sbjct: 4   MGLRSNFLALVPLLLLLVSNAKSQSSGIFDVTTFGAKPNVDITAALAIAWKTACASTTPS 63

Query: 61  KVLAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHPKGDGLVLLEYIDQLTLSGTGVF 120
           KVL PK  Y++SQSNL  PCKS IEFQ+EGTLQAPA PKGDGL++LEY+DQLT+SGTGV 
Sbjct: 64  KVLIPKESYKLSQSNLNGPCKSSIEFQIEGTLQAPADPKGDGLLILEYVDQLTMSGTGVL 123

Query: 121 DGQGKA------------------------------------------------------ 180
           DGQGK                                                       
Sbjct: 124 DGQGKTGWEKNDCHLKKICTKLPMNLKFNFITNSIVKDITSLDSKNYHINLLGCKNLTID 183

Query: 181 --------------------------------------------------------GHGI 240
                                                                   GHGI
Sbjct: 184 HVTITAPDNSPNTDGIHVSSSEGINILNTKIETGDDCISVGDSNKQIAISDVTCGPGHGI 243

Query: 241 SIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVSN 292
           SIGSLGKY+KE+ V GV VKKCK+++T+NGVRIKTW DS GAF A DMHFEDIEMVNVSN
Sbjct: 244 SIGSLGKYSKEQAVEGVTVKKCKLINTSNGVRIKTWPDSVGAFPAIDMHFEDIEMVNVSN 303

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BLAST of Spg006350 vs. ExPASy Swiss-Prot
Match: Q05967 (Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 5.9e-70
Identity = 158/386 (40.93%), Postives = 202/386 (52.33%), Query Frame = 0


Query: 13  LLLLLVSTAKGQS-VFDVTKYGAKSNADITQALANAWKEACASTSPSKVLAPKGVYQVSQ 72
           +LL L    + Q+ VFD+TKYGA SNADI++AL NA+KEAC STSPS ++ PKG + ++Q
Sbjct: 12  VLLFLAHFGESQTGVFDITKYGANSNADISEALLNAFKEACQSTSPSTIVIPKGTFTMNQ 71

Query: 73  SNLKSPCKSPIEFQVEGTLQAPAHP---KGDGLVLLEYIDQLTLSGTGVFDGQGKA---- 132
             L+ PCKSP+E Q++ TL+AP+ P   K    + +  +DQ T+SG G+ DGQ  A    
Sbjct: 72  VKLEGPCKSPLELQIQATLKAPSDPSQLKVGEWLTVNKLDQFTMSGGGILDGQAAAAWEC 131

Query: 133 ------------------------------------------------------------ 192
                                                                       
Sbjct: 132 KQSKKCNKLPNNLSFNSLTNSTIKDITTLDSKSFHVNVNQCKNLTFIRFNVSAPANSPNT 191

Query: 193 -------------------------------------------GHGISIGSLGKYTKEKD 252
                                                      GHGIS+GSLG    EK 
Sbjct: 192 DGIHVSRSSSVNITDSNFSTGDDCISVGDETEQLYITRVTCGPGHGISVGSLGGNPDEKP 251

Query: 253 VVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVSNPVIIDQEYCPWNQ 288
           VVGVFV+ C   +T NGVRIKTW  S       D+HFEDI + NVSNPV+IDQ YCP+N+
Sbjct: 252 VVGVFVRNCTFTNTDNGVRIKTWPASHPGV-VNDVHFEDIIVQNVSNPVVIDQVYCPFNK 311

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BLAST of Spg006350 vs. ExPASy Swiss-Prot
Match: Q40312 (Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 2.3e-66
Identity = 152/399 (38.10%), Postives = 203/399 (50.88%), Query Frame = 0


Query: 9   ALLPLLLLLVSTAKGQS-VFDVTKYGAKSNADITQALANAWKEACASTSPSKVLAPKGVY 68
           A++   L +      QS V D++K+G K N+DI QAL +AW EACAST+ +K++ P G Y
Sbjct: 6   AIIVSFLFIADFCAAQSGVLDISKFGGKPNSDIGQALTSAWNEACASTTAAKIVIPAGTY 65

Query: 69  QVSQSNLKSPCKSPIEFQVEGTLQAPAHP---KG-DGLVLLEYIDQLTLSGTGVFDGQGK 128
           Q++   LK PCK+PIE QV+GT+QAPA P   KG +      Y+D LTLSG GVFDGQG 
Sbjct: 66  QLNGIELKGPCKAPIELQVDGTIQAPADPSVIKGTEQWFKFLYMDHLTLSGKGVFDGQGA 125

Query: 129 A----------------------------------------------------------- 188
                                                                       
Sbjct: 126 TVYKKAAPASAWSGKNSNSKVFMNFGFNFVNNSIVRGVTSKDSKNFHVMVFGCKNITFDG 185

Query: 189 -------------------------------------------------------GHGIS 248
                                                                  GHG+S
Sbjct: 186 FTITAPGDSPNTDGIHMGKSTDVKILNTNIGTGDDCVSIGDGSKQITVQGVNCGPGHGLS 245

Query: 249 IGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVSNP 288
           +GSLGK+T E++V G+ VK C + +T NGVRIKTW D+ G  + +D+HFEDI M NV NP
Sbjct: 246 VGSLGKFTTEENVEGITVKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNP 305

[Close]

BLAST of Spg006350 vs. ExPASy Swiss-Prot
Match: P24548 (Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 3.3e-65
Identity = 149/359 (41.50%), Postives = 179/359 (49.86%), Query Frame = 0


Query: 39  DITQALANAWKEACASTSPSKVLAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHP-- 98
           D TQAL  AWKEACAS SPS +L PKG + V    L+ PCKS I  Q++GTL+APA P  
Sbjct: 1   DSTQALTTAWKEACASASPSTILVPKGNFAVGLITLEGPCKSSIGLQLQGTLKAPADPSK 60

Query: 99  -KGDGLVLLEYIDQLTLSGTGVFDGQGKA------------------------------- 158
            KG G + L  ID LT+ G GVFDGQGK+                               
Sbjct: 61  IKGLGWINLNKIDLLTIFGGGVFDGQGKSAWVQNDCHKNGPICKTLSMNLRLYAVTNSIL 120

Query: 159 ------------------------------------------------------------ 218
                                                                       
Sbjct: 121 RDVTTLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTGDD 180

Query: 219 --------------------GHGISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTW 278
                               GHGIS+GSLG+Y  E+ VVG++VK C I  + NGVRIKTW
Sbjct: 181 CISLGDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKNCTITGSQNGVRIKTW 240

Query: 279 SDSTGAFSATDMHFEDIEMVNVSNPVIIDQEYCPWNQCNRKVASKIKISKVSFKNIKGTS 284
             S     A++MHF+DI M +V  P++IDQ YCP+NQC  +V S +K+SK+SFKNIKGTS
Sbjct: 241 PKSEPG-EASEMHFQDITMNSVGTPILIDQGYCPYNQCTAEVPSSVKLSKISFKNIKGTS 300

[Close]

BLAST of Spg006350 vs. ExPASy Swiss-Prot
Match: W8P8Q3 (Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 PE=1 SV=3)

HSP 1 Score: 239.2 bits (609), Expect = 5.9e-62
Identity = 147/396 (37.12%), Postives = 192/396 (48.48%), Query Frame = 0


Query: 10  LLPLLLLLVSTAKGQSVFDVTKYGAKSNADITQALANAWKEACASTSPSKVLAPKGVYQV 69
           L+ L  L VS A+ Q   D+TK+GAK NAD T AL  AWKEACA+ +P+K++ P G + +
Sbjct: 9   LVALFYLFVSVARSQGPIDITKFGAKPNADATSALLAAWKEACAAAAPAKIVVPAGEFLL 68

Query: 70  SQSNLKSPCKSPIEFQVEGTLQAP---AHPKG-DGLVLLEYIDQLT---LSGTGVFDGQG 129
           +   L+ PCK+P+  ++ G  +AP   A  KG D  V +E +  LT   L   G FDGQG
Sbjct: 69  NAVKLQGPCKAPLTIEIAGNFKAPADVAQMKGEDTWVKIENVQGLTITCLPTGGTFDGQG 128

Query: 130 KA---------------------------------------------------------- 189
           +A                                                          
Sbjct: 129 QAAWKQNKCAQSGMCNSLPYNFRFNTLTNAQISGIKSLNSKLYHMGVMGCKNITLTGLTI 188

Query: 190 ----------------------------------------------------GHGISIGS 249
                                                               GHGISIGS
Sbjct: 189 DAPKDSLNTDGMHIGRSNGVHATNSKIGTGDDCISMGDGAVDVHVEGITCGPGHGISIGS 248

Query: 250 LGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVSNPVII 289
           +GK+  E    G+FVK C    T NGVRIK+W +S  A SA+D+HFEDI + NV NPVII
Sbjct: 249 MGKFANEAPNTGIFVKNCSFTDTDNGVRIKSWMNSFEA-SASDLHFEDITVTNVLNPVII 308

[Close]

BLAST of Spg006350 vs. ExPASy Swiss-Prot
Match: Q39786 (Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 8.5e-61
Identity = 143/399 (35.84%), Postives = 198/399 (49.62%), Query Frame = 0


Query: 9   ALLPLLLLLVSTAKGQS-VFD-VTKYGAKSN--ADITQALANAWKEACASTSPSKVLAPK 68
           ++  LLLL +S +K QS  FD V K+GAK++   D+++   +AWKEACAS +PS V+ PK
Sbjct: 10  SMFVLLLLFISASKVQSDAFDVVAKFGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPK 69

Query: 69  GVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHP---KGDGLVLLEYIDQLTLSGTGVFDGQ 128
           G Y +S+ NL+ PCK+PIE  V+GT+QAPA P   K    V    ++   + G G+FDGQ
Sbjct: 70  GTYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQ 129

Query: 129 GK---------------------------------------------------------- 188
           G                                                           
Sbjct: 130 GSIAYEKNTCENREFRSKLPVNIRFDFLTNALIQDITSKDSKLFHINVFACKNITLERLK 189

Query: 189 ----------------------------------------------------AGHGISIG 248
                                                                GHGISIG
Sbjct: 190 IEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGTKNMVIKEITCGPGHGISIG 249

Query: 249 SLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVSNPVI 291
           SLGK+  E+ V G+ +  C I +T+NG RIKTW    G  + +++HFEDI M NVS+P++
Sbjct: 250 SLGKFQNEEPVEGIKISNCTITNTSNGARIKTWPGEHGG-AVSEIHFEDITMNNVSSPIL 309

[Close]

BLAST of Spg006350 vs. ExPASy TrEMBL
Match: A0A5A7TRZ0 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00600 PE=3 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 7.3e-116
Identity = 234/404 (57.92%), Postives = 260/404 (64.36%), Query Frame = 0


Query: 1   MGSRTDFVALLPLLLLLVSTAKGQS---VFDVTKYGAKSNADITQALANAWKEACASTSP 60
           MG  ++FV LLP+LLLLVS +K QS   VFD+TKYGAK NAD+T ALA+AWKEACAST+P
Sbjct: 1   MGLISNFVTLLPVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTP 60

Query: 61  SKVLAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHPKGDGLVLLEYIDQLTLSGTGV 120
           SKVL PKG Y +SQSNLK PCKS IE Q+EGTLQAPA PKGDGL+LLEY+DQLT+SGTGV
Sbjct: 61  SKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPKGDGLLLLEYVDQLTVSGTGV 120

Query: 121 FDGQGKA----------------------------------------------------- 180
            DGQGKA                                                     
Sbjct: 121 LDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTF 180

Query: 181 ---------------------------------------------------------GHG 240
                                                                    GHG
Sbjct: 181 DHVTITAPGNSPNTDGIHVSSSEQINILNTNIATGDDCISVGDTNKQVVISDVTCGPGHG 240

Query: 241 ISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVS 292
           ISIGSLGKY+KEK+VVGV VKKCK+  TTNGVRIKTW DS  AF A+DMHFEDIEMVNVS
Sbjct: 241 ISIGSLGKYSKEKEVVGVTVKKCKLTDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVS 300

[Close]

BLAST of Spg006350 vs. ExPASy TrEMBL
Match: A0A5D3DYI3 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00050 PE=3 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 7.3e-116
Identity = 234/404 (57.92%), Postives = 260/404 (64.36%), Query Frame = 0


Query: 1   MGSRTDFVALLPLLLLLVSTAKGQ---SVFDVTKYGAKSNADITQALANAWKEACASTSP 60
           MG  ++FVALLP+LLLLVS +K Q   SVFD+TKYGAK NAD+T AL +AWKEACAST+P
Sbjct: 1   MGLISNFVALLPVLLLLVSNSKAQSSGSVFDITKYGAKPNADVTAALVSAWKEACASTTP 60

Query: 61  SKVLAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHPKGDGLVLLEYIDQLTLSGTGV 120
           SKVL PKG Y +SQSNLK PCKS IE Q+EGTLQAPA PKGDGL+LLEY+DQLT+SGTGV
Sbjct: 61  SKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPKGDGLLLLEYVDQLTVSGTGV 120

Query: 121 FDGQGKA----------------------------------------------------- 180
            DGQGKA                                                     
Sbjct: 121 LDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTF 180

Query: 181 ---------------------------------------------------------GHG 240
                                                                    GHG
Sbjct: 181 DHVTITAPGNSPNTDGIHVSSSEQINILNTNIATGDDCISVGDTNKQVVISDVTCGPGHG 240

Query: 241 ISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVS 292
           ISIGSLGKY+KEK+VVGV VKKCK+  TTNGVRIKTW DS  AF A+DMHFEDIEMVNVS
Sbjct: 241 ISIGSLGKYSKEKEVVGVTVKKCKLTDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVS 300

[Close]

BLAST of Spg006350 vs. ExPASy TrEMBL
Match: A0A5A7TR51 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold243G00990 PE=3 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 2.1e-115
Identity = 234/404 (57.92%), Postives = 260/404 (64.36%), Query Frame = 0


Query: 1   MGSRTDFVALLPLLLLLVSTAKGQS---VFDVTKYGAKSNADITQALANAWKEACASTSP 60
           MG  ++FVALL +LLLLVS +K QS   VFD+TKYGAK NAD+T ALA+AWKEACAST+P
Sbjct: 1   MGLISNFVALLSVLLLLVSNSKAQSSGGVFDITKYGAKPNADVTAALASAWKEACASTTP 60

Query: 61  SKVLAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHPKGDGLVLLEYIDQLTLSGTGV 120
           SKVL PKG Y +SQSNLK PCKS IE Q+EGTLQAPA PKGDGL+LLEY+DQLT+SGTGV
Sbjct: 61  SKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPKGDGLLLLEYVDQLTVSGTGV 120

Query: 121 FDGQGKA----------------------------------------------------- 180
            DGQGKA                                                     
Sbjct: 121 LDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTF 180

Query: 181 ---------------------------------------------------------GHG 240
                                                                    GHG
Sbjct: 181 DHVTITAPGNSPNTDGIHVSSSEQINILNTNIATGDDCISVGDTNKQVVISDVTCGPGHG 240

Query: 241 ISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVS 292
           ISIGSLGKY+KEK+VVGV VKKCK+  TTNGVRIKTW DS  AF A+DMHFEDIEMVNVS
Sbjct: 241 ISIGSLGKYSKEKEVVGVTVKKCKLTDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVS 300

[Close]

BLAST of Spg006350 vs. ExPASy TrEMBL
Match: A0A5D3BWP4 (Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold280G00550 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 5.2e-114
Identity = 232/404 (57.43%), Postives = 258/404 (63.86%), Query Frame = 0


Query: 1   MGSRTDFVALLPLLLLLVSTAKGQS---VFDVTKYGAKSNADITQALANAWKEACASTSP 60
           MG  ++FVALL +LLLLVS  K QS   V D+TK+GAK NAD+T ALA+AWKEACAST+P
Sbjct: 1   MGLISNFVALLHVLLLLVSNCKAQSSGVVIDITKFGAKPNADVTAALASAWKEACASTTP 60

Query: 61  SKVLAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHPKGDGLVLLEYIDQLTLSGTGV 120
           SKVL PKG Y +SQSNLK PCKS IE Q+EGTLQAPA PKGDGL+LLEY+DQLT+SGTGV
Sbjct: 61  SKVLIPKGSYGLSQSNLKGPCKSAIELQIEGTLQAPADPKGDGLLLLEYVDQLTVSGTGV 120

Query: 121 FDGQGKA----------------------------------------------------- 180
            DGQGKA                                                     
Sbjct: 121 LDGQGKAGWEKNDCHLKKECTKLPMNLKLNFVTNSIVKDITSLDSKNYHINLLGCKNLTF 180

Query: 181 ---------------------------------------------------------GHG 240
                                                                    GHG
Sbjct: 181 DHVTITAPGNSPNTDGIHVSSSEQINILNTNIATGDDCISVGDTNKQVVISDVTCGPGHG 240

Query: 241 ISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVS 292
           ISIGSLGKY+KEK+VVGV VKKCK+  TTNGVRIKTW DS  AF A+DMHFEDIEMVNVS
Sbjct: 241 ISIGSLGKYSKEKEVVGVTVKKCKLTDTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVS 300

[Close]

BLAST of Spg006350 vs. ExPASy TrEMBL
Match: A0A1S3BML3 (LOW QUALITY PROTEIN: exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103491497 PE=3 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 2.6e-113
Identity = 231/404 (57.18%), Postives = 258/404 (63.86%), Query Frame = 0


Query: 1   MGSRTDFVALLPLLLLLVSTAKGQS---VFDVTKYGAKSNADITQALANAWKEACASTSP 60
           MG  ++FVALLP+LLLLVS +K QS   VFD+TKYGAK NADIT ALA+AWKEACAST+P
Sbjct: 12  MGLISNFVALLPVLLLLVSNSKAQSAAGVFDITKYGAKPNADITAALASAWKEACASTTP 71

Query: 61  SKVLAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHPKGDGLVLLEYIDQLTLSGTGV 120
           SKVL PKG Y ++QSNLK PCKS IE Q+EGT+QA    KGDGL+LLEY+DQLT+SGTGV
Sbjct: 72  SKVLIPKGTYGLTQSNLKGPCKSSIELQLEGTVQASVDVKGDGLLLLEYVDQLTVSGTGV 131

Query: 121 FDGQGKA----------------------------------------------------- 180
            DGQGK                                                      
Sbjct: 132 VDGQGKTAWGKNDCHLKKICTKLPMNLKFNFVTNSIVKDITSLDSKNYHFNLLACKNLTF 191

Query: 181 ---------------------------------------------------------GHG 240
                                                                    GHG
Sbjct: 192 DHVTITAPGNSPNTDGIHVGDSEQINILNTNIATGDDCISVGISNKQIVISDVTCGPGHG 251

Query: 241 ISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVS 292
           ISIGSLGKYT EK++VGV VKKCK+  TTNGVRIKTW DS  AF A+DMHFEDIEMVNVS
Sbjct: 252 ISIGSLGKYTNEKELVGVTVKKCKLTGTTNGVRIKTWPDSAVAFPASDMHFEDIEMVNVS 311

[Close]

BLAST of Spg006350 vs. TAIR 10
Match: AT3G07820.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 223.8 bits (569), Expect = 1.8e-58
Identity = 132/382 (34.55%), Postives = 185/382 (48.43%), Query Frame = 0


Query: 14  LLLLVSTAKGQSVFDVTKYGAKSNADITQALANAWKEACASTSPSKVLAPKGVYQVSQSN 73
           ++ L+  +    VF +   G+ S +DITQAL  A+  AC S+SPSKV+ PKG +++ +  
Sbjct: 12  IICLLGISANAEVFTI---GSSSGSDITQALLKAFTSACQSSSPSKVVIPKGEFKLGEIE 71

Query: 74  LKSPCKSPIEFQVEGTLQAP--AHPKGDGLVLLEYIDQLTLSGTGVFDGQGKA------- 133
           ++ PCK+PIE  ++GT++A   A    +  V+   ID   L+G G FDG+G A       
Sbjct: 72  MRGPCKAPIEVTLQGTVKADGNAIQGKEKWVVFGNIDGFKLNGGGAFDGEGNAAWRVNNC 131

Query: 134 ------------------------------------------------------------ 193
                                                                       
Sbjct: 132 HKTFECKKLPISIRFDFILNSEIRDISSIDAKNFHINVLGAKNMTMNNIKIVAPEDSPNT 191

Query: 194 -------------------------------------------GHGISIGSLGKYTKEKD 253
                                                      GHGIS+GSLG+Y  E+D
Sbjct: 192 DGIHLGRSDGVKILNSFISTGDDCISVGDGMKNLHVEKVTCGPGHGISVGSLGRYGHEQD 251

Query: 254 VVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVSNPVIIDQEYCPWNQ 284
           V G+ V  C +  T NG+RIKTW  +  + +A+D+HFEDI + +VSNP++IDQEYCPWNQ
Sbjct: 252 VSGIKVINCTLQETDNGLRIKTWPSAACSTTASDIHFEDIILKDVSNPILIDQEYCPWNQ 311

[Close]

BLAST of Spg006350 vs. TAIR 10
Match: AT3G07840.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 204.5 bits (519), Expect = 1.1e-52
Identity = 134/404 (33.17%), Postives = 188/404 (46.53%), Query Frame = 0


Query: 1   MGSRTDFVALLPLLLLLVSTAKGQSVFDVTKYGAKSNADITQALANAWKEACASTSPSKV 60
           MGS     A+L ++ LL  +A  + VF+V   G    +DITQAL  A+  AC + + SKV
Sbjct: 1   MGSYLGISAVLFVISLLGFSANAE-VFNV---GGSPGSDITQALLKAFTSACQAPTASKV 60

Query: 61  LAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQA--PAHPKGDGLVLLEYIDQLTLSGTGVF 120
           +  KG +++ +  +  PCK+P+E  ++GTL+A   A    +  V+   I+   L+G G+F
Sbjct: 61  VITKGEFKLGEIEMTGPCKAPVEINLQGTLKADGKAIQGKERWVVFLRINGFKLNGGGIF 120

Query: 121 DGQGKA------------------------------------------------------ 180
           DG+G A                                                      
Sbjct: 121 DGEGNAAWRVNNCHKTFECKKLPISIRFDFVENAEIRDISSIDAKNFHINVLGAKNMTFD 180

Query: 181 --------------------------------------------------------GHGI 240
                                                                   GHGI
Sbjct: 181 NVKVIAPAESPNTDGIHLGRSEGVKILNSKIATGDDCISVGDGMKNLHVENVMCGPGHGI 240

Query: 241 SIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVSN 292
           S+GSLG+Y  E+DV G+ V  C +  T NG+RIKTW  +  A +A+ +HFE+I + NVSN
Sbjct: 241 SVGSLGRYVHEQDVTGITVVNCTLQGTDNGLRIKTWPSAACATTASGIHFENIILNNVSN 300

[Close]

BLAST of Spg006350 vs. TAIR 10
Match: AT3G07830.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 202.2 bits (513), Expect = 5.6e-52
Identity = 127/401 (31.67%), Postives = 184/401 (45.89%), Query Frame = 0


Query: 1   MGSRTDFVALLPLLLLLVSTAKGQSVFDVTKYGAKSNADITQALANAWKEACASTSPSKV 60
           MGS      +  + LL  S     +  +V +  +   +DITQAL  A+  AC S +P KV
Sbjct: 1   MGSYFGISTIFVICLLGFSA----NAHEVLRLTSSPGSDITQALLRAFTTACQSPTPRKV 60

Query: 61  LAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPA---HPKGDGLVLLEYIDQLTLSGTGV 120
           + PKG +++ +  +  PCKSP+E  + GT+ A     H K +  V+ + +D   L+G G 
Sbjct: 61  VIPKGQFKLGEIMMSGPCKSPVEITLLGTVLADGNSIHGK-EKWVVFQRMDGFRLNGGGT 120

Query: 121 FDGQGKA----------------------------------------------------- 180
           FDG+G A                                                     
Sbjct: 121 FDGEGNAAWRVNNCHKTFECKKLPISIRFDFVTNAEIRDISSIDAKNFHINVIGAKNMTF 180

Query: 181 ---------------------------------------------------------GHG 240
                                                                    GHG
Sbjct: 181 DNVKIMAPAESPNTDGIHLGRSVGVSIINSRISTGDDCVSVGDGMVNLLVKNVVCGPGHG 240

Query: 241 ISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMVNVS 289
           IS+GSLG+Y  E+DV G+ V  C +  T NG+RIKTW  +  + +A+++HFE+I + NVS
Sbjct: 241 ISVGSLGRYGHEQDVSGIRVINCTLQETDNGLRIKTWPSAACSTTASNIHFENIILRNVS 300

[Close]

BLAST of Spg006350 vs. TAIR 10
Match: AT5G48140.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 187.2 bits (474), Expect = 1.9e-47
Identity = 83/158 (52.53%), Postives = 114/158 (72.15%), Query Frame = 0


Query: 125 GHGISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIEMV 184
           GHGISIGSLG+Y+ E++V G+ +  C +  T NG+RIKTW  +    +A+D+HFE+I + 
Sbjct: 232 GHGISIGSLGRYSHEENVSGIKIINCTLQETDNGLRIKTWPSAACTTTASDIHFENILLK 291

Query: 185 NVSNPVIIDQEYCPWNQCNRKVASKIKISKVSFKNIKGTSATPVAVKLVCSKSLPCEGIE 244
           NVSNP++IDQEYCPWNQCN++  S IK++ +SFK I+GTS    AVKL+CSK  PC+ +E
Sbjct: 292 NVSNPILIDQEYCPWNQCNKQKPSTIKLANISFKKIRGTSGNKDAVKLLCSKGYPCQNVE 351

Query: 245 VVDIDLTYSGTQGPIKSQCSNVKPTITGKQNPPICAEP 283
           V D+++ Y+G  GP   QCSNV P + G Q P  C+ P
Sbjct: 352 VGDVNIQYTGADGPATFQCSNVSPKLVGTQIPKACSSP 389

[Close]

BLAST of Spg006350 vs. TAIR 10
Match: AT1G17150.1 (Pectin lyase-like superfamily protein )

HSP 1 Score: 185.3 bits (469), Expect = 7.1e-47
Identity = 127/397 (31.99%), Postives = 170/397 (42.82%), Query Frame = 0


Query: 6   DFVAL---LPLLLLLVSTAK---GQSVFDVTKYGAKSNA--DITQALANAWKEACASTSP 65
           DFV +   L LLL+ V+T++      VFDV  YGAK +   D T A  NAWK+AC    P
Sbjct: 6   DFVFMAFGLLLLLIAVTTSRPITRPKVFDVRSYGAKGDGKMDNTNAFTNAWKDACRWNGP 65

Query: 66  SKVLAPKGVYQVSQSNLKSPCKSPIEFQVEGTLQAPAHPKGDGL-----VLLEYIDQLTL 125
           SK+  P G + +       PC   I F ++GTL AP  P  D +     +   YI+ LT+
Sbjct: 66  SKMYIPLGTFYLGGVTFVGPCDGKISFVIDGTLLAP--PNNDDIKKEIWINFRYINYLTV 125

Query: 126 SGTGVFDGQGK------------------------------------------------- 185
            G G  DGQGK                                                 
Sbjct: 126 FGDGTLDGQGKKSWSLIDCQKDNNCPKLAINMGFDFVKNSSMNGITSLNSKAGHFNFLSV 185

Query: 186 ------------------------------------------------------------ 245
                                                                       
Sbjct: 186 DHFSITRVNIIAPSNSPNTDGIKIALSSNMQISNTHISTGDDCIAMLSGNTNFDIYNVKC 245

Query: 246 -AGHGISIGSLGKYTKEKDVVGVFVKKCKIMSTTNGVRIKTWSDSTGAFSATDMHFEDIE 280
             GHGISIGSLGK   EK+V G+ V+      TTNG+RIKTW  S       ++ +E+++
Sbjct: 246 GPGHGISIGSLGKNKDEKNVNGLMVRNSVFTGTTNGIRIKTWESSASTIRIINLVYENLQ 305

The following BLAST results are available for this feature:

BLAST of Spg006350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652893.2	1.5e-115	58.13	exopolygalacturonase [Cucumis sativus] >KGN64588.2 hypothetical protein Csa_0140...	[more]
KAA0045593.1	1.5e-115	57.92	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK28803.1 exopolygalactur...	[more]
KAA0045608.1	1.5e-115	57.92	exopolygalacturonase-like [Cucumis melo var. makuwa] >TYK02648.1 exopolygalactur...	[more]
KAA0045594.1	4.4e-115	57.92	exopolygalacturonase-like [Cucumis melo var. makuwa]	[more]
XP_038895545.1	6.4e-114	57.07	exopolygalacturonase-like [Benincasa hispida]	[more]

BLAST of Spg006350 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q05967	5.9e-70	40.93	Polygalacturonase OS=Nicotiana tabacum OX=4097 GN=PG1 PE=2 SV=1	[more]
Q40312	2.3e-66	38.10	Polygalacturonase OS=Medicago sativa OX=3879 PE=2 SV=1	[more]
P24548	3.3e-65	41.50	Exopolygalacturonase (Fragment) OS=Oenothera organensis OX=3945 PE=2 SV=1	[more]
W8P8Q3	5.9e-62	37.12	Probable galacturan 1,4-alpha-galacturonidase SALK6 OS=Kali turgidum OX=151250 P...	[more]
Q39786	8.5e-61	35.84	Polygalacturonase OS=Gossypium hirsutum OX=3635 GN=G9 PE=2 SV=1	[more]

BLAST of Spg006350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRZ0	7.3e-116	57.92	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3DYI3	7.3e-116	57.92	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5A7TR51	2.1e-115	57.92	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A5D3BWP4	5.2e-114	57.43	Exopolygalacturonase-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BML3	2.6e-113	57.18	LOW QUALITY PROTEIN: exopolygalacturonase-like OS=Cucumis melo OX=3656 GN=LOC103...	[more]

BLAST of Spg006350 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G07820.1	1.8e-58	34.55	Pectin lyase-like superfamily protein	[more]
AT3G07840.1	1.1e-52	33.17	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	5.6e-52	31.67	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	1.9e-47	52.53	Pectin lyase-like superfamily protein	[more]
AT1G17150.1	7.1e-47	31.99	Pectin lyase-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 124..271 e-value: 6.9E-40 score: 138.9
IPR012334	Pectin lyase fold	GENE3D	2.160.20.10		coord: 15..123 e-value: 5.6E-19 score: 70.3
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 52..123 e-value: 1.2E-8 score: 34.4 coord: 124..268 e-value: 3.1E-44 score: 151.4
None	No IPR available	PANTHER	PTHR31375:SF248	POLYGALACTURONASE	coord: 7..123 coord: 124..283
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 124..283
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 7..123
IPR011050	Pectin lyase fold/virulence factor	SUPERFAMILY	51126	Pectin lyase-like	coord: 14..281

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006350.1	Spg006350.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
molecular_function	GO:0004650	polygalacturonase activity