Spg006274 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006274
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Mediator of RNA polymerase II transcription subunit 9
Location	scaffold4: 4772259 .. 4775781 (+)
RNA-Seq Expression	Spg006274
Synteny	Spg006274

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATTGCAACCCCAACATTTCCCCCAGCAACAACAACAACAGCAGCAGCAGCAACAATATCATTTTCAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAGCAACAGCAGCAACGACAGCAGCAACAGCAACAGCAGCAATATCATCAACACCAATCTTTGGCTTCCCATTTTCATCTATTTCATGTAATTCGCACAGAATCCCTAGATTTCGAGTGTTCTCTAATGTCTGTGTTTTGTGTTTGTTGACATTCGTGGATGTTTCGTGTTTTTTAGCTAGTGGAGAAATTGGCGGATGCTATTGAGAATGGAGCTAGAGATCAGCAGTCTGATGCATTGGTATAAATGTTGATTGTTTTTCAAATTTTCCCTAAATATTGATTATACCGTTGTTTGCATGAATAATTGGTTCTTGTAACGTTTTGGAAGGTCCATGATCTGAATAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGGTATGTTGGAACTTGATTTTGCTTTTATATGTATGCGTAGGCTAGAGTGTACTCTGTTTAACTGTGTTCTTCATGTGCTTGACATAACAAATCCGTCTCTGCAAATGAGATGTACGAATTTAACTGAAATATAGATGTCATTTTTTAAACTTTTGCTTTATTAGTGTGAATGTTAGTGATTATGGTTTCTAAGACAATAGGTTTTAGTAGGACATAGTTTAATTTTTGTTTTTGTATGGAAAGAGATGATGTGGGATGTAATTTATATCTAGCTAACTCTTTACAGTATCATCTTCTCAAAAAAAAAAAAAAAAAAAAAAAGAAACTCTTAACACTATCATGTGCACACCATTAACCTATGGACTGGTTTTTTTGTAGGCTCACCAGGACTCTAAGAAATGTTCTATTTCCCTCTTCTTTTATGACTTTTTTTTTTGGAGGGGGGGGGGGGGGGGGGGATGTTGGGGGTTGTGGTTCGTGATATGTTTTCTTGTAAAAAAGGGTAAGCTATTAGTTTTTTCTTTGGTTGCAGACAGTAGAGGGACAGAAGAAAAAGCTGGAAGAACATGAGCAGTTGTTAAATCATCGAAGGTATGGTGGTAACCATTTTTTGCCTGTTGTTTGCATTAAATCGTCTTATTCATCAATGTCCCTATTAATGATTCTCTATTCAAATAGGGAACTGATTGGCAAGTATAAGAACTCTGTTGAAGAGCTTGTAAAGGGTGAGCCTTAAGCTCCTTCTCAACCATTCCTCATTAGGTAATACTGTAACTATATTTGTTCTGTTTCTTTTCTGTTTATCTCAATGATCAGAACACTTTTTCTTTTTTCCTCCTGTTATTATCATTACCCATTTTGTTAATATAAGAAATAGCGAAATCTTAATATATGCTATGCTAGCAGAATCTTGTTATCATTCATGAGCATCCACTTGAACCCTGAATCTAGACGCATATCAATAGCGAAATCTCAATATGCTAATGCACACATACCAAAACTTTGATTGATCATACGAACTTTCTGTTGAGGAATTTAAATACCAGCTTTTGTGCGTTCACGACATTATGTGTTGTTAGTAAGTTCTCATGTTGACATGAAAGAGCATATGAAATGACTTTCTAAGTGCTTAAAAAAAGACTTAAGTGTTAAAAAAGGTGTTTTGAAACACTTGAAAAGTCATCCCAAAAGACCTATTTGGAATGTAAGAAATAGTAATGTCATGCTTATATATGGTTGGAGTTGACCTCTGGTTTTGAATATCTCCAATCAATTCAATGCGTGCTTTTGTTCAATTTTGGCTCAGACTCATTTGAATTGAAACTTGCCTTTACAATATTTGTCTTTTCTACTGTTTCCCACAAACTCGTTCTACTGACTTATCTATTCTACACTATTTCAGGTCTGGCTAGCATCATTTACCCTTGAAGGGATGCCAAAATAGCTTTTCCCTGAGTCATGCAATTCCATGGAGTGGCTTTTATATCTAATCTGACTCCTGCATTTCCTAACAGGACGATGCACAATCGAATTCAGTCTTTTCTGCTCTCTTCAGTGCTATGGGGCACGACTTTTTCAGGAAATTCAGTTACCTCTAATTTACCTTGTACAGTTATGCCAACAGTTAACTCTGAACTGCTAAAATTAATGGTCAATAGATGCTTTCTCCAGTTTTCCATTCTTTTCAATGTTAAATTTGGATTTACTGCTGATTGGTGCTCCACTGTTTTATCATTAGCTAAATGCAGCCTGAAGTGACCATTTTTGTTAATTAATTTATTTGTGATTTTGTTGATATGTCTTGTTCATTTGTTGAATGGTGCATCTGCCTTAAAGTTTCCTTAATTTTGGAACTTAAATTTTAAAACGATAGAGACTAATTTGGAGATCTTTCAAAATCTTAAGAGTGAATATTGAGTGGTAAAACTTGACCTGAATTTCAGATACTTTTCCCAGTCATATCCTTTCCCCTTTCTACCTTGATTTTCACATCAGGCCAGGAATAGAAACCACAATAAGTGTTCTTTCGTATAAGATTTAAGTTACGTTCTTGAACGTTCTATTCAATAATACAATCATCAACATCATGACCTTCAATCTGAAGAGCCAAATCATGAAGAATTTCATCAACTTTCTCGAAACCTTCTTGTATTGAGTTTTCTGCTTTGAACATGTAAACCTTCTTCTTCACCTCAATCCAGTTGCGCCCAGGAACTTTCTTAGTTCCTTTAAGCCCTTCATCCTTGCTGAGATCCTCACCCTTGCAAAATCCTCCCATCTACCGCTTGCAGCAAAAATATTCGAGAGCAACATATGGCTACCCGTTAAATCGGAATTCAGATTGAAAATCTGAGGCAGTTTCTTCTGCAAGTTCTGTATCTTTGTGCATTCTGCAAGAGTTGAGAAGAGCACTCCAAATATAAGCATTGGGTTCCATTGGCATGCCTTTGACTATGTTACTCGCTCGCTTCTTCCACAAGCCCAGCACGACCGAGATCGACCATGCACGCATAGTGCTCCATCTGAGGTTTGATCTTGAAGTTCTGTAGCATCTGATAAAAAAGCCAACGACCTTCGGCAACAAGACCGACGTGACTACAAGCAGAAAGAGCAGCAATAAAGGTAACATCATCTGGTCTAAGTCCTGATCTGATCATCTGATCAAAAGTTGTAAGAGCATCTTTACCAAGTCCATGCATTCCATATCCTGCAATCATTGAGTTCCATGAGATCAAATCTCGATTTTCAAGTTGTTCAAACACCAAACAACCTGGCTTGAAACTTCCACATTTTTTATACATGTTAATCAATCCATTTCCTACCAATATGTTATCATCCATCAGAGCTCTGATGACATGACCATGCATTTCCCTACCAAGATTTAGAGCTGCTAGCGTAGCACAAACTGATAAAACACTAGATATCGTCACCGAGTTTGCCTTTACATTTGCAAGCTGCATTTGACGAAAAACTTCTAATGATTCTTCTCCTAGTCCATTGGAAGCAAATCCAC

mRNA sequence

CAATTGCAACCCCAACATTTCCCCCAGCAACAACAACAACAGCAGCAGCAGCAACAATATCATTTTCAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAGCAACAGCAGCAACGACAGCAGCAACAGCAACAGCAGCAATATCATCAACACCAATCTTTGGCTTCCCATTTTCATCTATTTCATCTAGTGGAGAAATTGGCGGATGCTATTGAGAATGGAGCTAGAGATCAGCAGTCTGATGCATTGGTCCATGATCTGAATAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGACAGTAGAGGGACAGAAGAAAAAGCTGGAAGAACATGAGCAGTTGTTAAATCATCGAAGGGAACTGATTGGCAAGTATAAGAACTCTGTTGAAGAGCTTGTAAAGGGTGAGCCTTAA

Coding sequence (CDS)

CAATTGCAACCCCAACATTTCCCCCAGCAACAACAACAACAGCAGCAGCAGCAACAATATCATTTTCAACAACAGCAGCAGCAGCGGCTTCTTCAACAGCAGCAACAGCAGCAACGACAGCAGCAACAGCAACAGCAGCAATATCATCAACACCAATCTTTGGCTTCCCATTTTCATCTATTTCATCTAGTGGAGAAATTGGCGGATGCTATTGAGAATGGAGCTAGAGATCAGCAGTCTGATGCATTGGTCCATGATCTGAATAACCACTTTGAGAAGTGCCAGCAACTGTTAAACTCGATATCTGGATCACTCAGCTCAAAGGCTATGACAGTAGAGGGACAGAAGAAAAAGCTGGAAGAACATGAGCAGTTGTTAAATCATCGAAGGGAACTGATTGGCAAGTATAAGAACTCTGTTGAAGAGCTTGTAAAGGGTGAGCCTTAA

Protein sequence

QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGEP

Homology

[Close]

BLAST of Spg006274 vs. NCBI nr
Match: XP_038903145.1 (mediator of RNA polymerase II transcription subunit 9 [Benincasa hispida])

HSP 1 Score: 223.8 bits (569), Expect = 9.9e-55
Identity = 143/170 (84.12%), Postives = 146/170 (85.88%), Query Frame = 0


Query: 1   QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLL----------------------QQQQQQQ 60
           QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLL                      QQQQQQQ
Sbjct: 98  QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 157

Query: 61  RQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLL 120
           +QQQQQQQQYHQHQSLASHFHL HLVEKLADAIENG RDQQSDALV+DLNNHFEKCQQLL
Sbjct: 158 QQQQQQQQQYHQHQSLASHFHLLHLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLL 217

Query: 121 NSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGEP 149
           NSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKG+P
Sbjct: 218 NSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGDP 267

[Close]

BLAST of Spg006274 vs. NCBI nr
Match: XP_022148099.1 (mediator of RNA polymerase II transcription subunit 9 [Momordica charantia])

HSP 1 Score: 222.2 bits (565), Expect = 2.9e-54
Identity = 139/150 (92.67%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   QLQPQHFPQQQQQQQQQQQYHF---QQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASH 60
           QLQPQHFP   QQQQQQQQYHF   QQQQQQRLLQQQQQQQ+QQQQQQQQYHQHQSLASH
Sbjct: 91  QLQPQHFP---QQQQQQQQYHFQQQQQQQQQRLLQQQQQQQQQQQQQQQQYHQHQSLASH 150

Query: 61  FHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKK 120
           FHLFHLVEKLADAIENGARDQQSDALV+DLNNHFEKCQQLLNSISGSLSSKAMTV+GQKK
Sbjct: 151 FHLFHLVEKLADAIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVDGQKK 210

Query: 121 KLEEHEQLLNHRRELIGKYKNSVEELVKGE 148
           KLEEH+QLLNHRRELIGKYKNSVEELVKG+
Sbjct: 211 KLEEHKQLLNHRRELIGKYKNSVEELVKGD 237

[Close]

BLAST of Spg006274 vs. NCBI nr
Match: XP_023542032.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 221.1 bits (562), Expect = 6.4e-54
Identity = 140/150 (93.33%), Postives = 142/150 (94.67%), Query Frame = 0


Query: 1   QLQPQHFP---QQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASH 60
           QLQPQHFP   QQQQQQQQQQQYHFQQQQQ    QQQQQQQ+QQQQQQQQYHQHQSLASH
Sbjct: 99  QLQPQHFPQQQQQQQQQQQQQQYHFQQQQQ----QQQQQQQQQQQQQQQQYHQHQSLASH 158

Query: 61  FHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKK 120
           FHLFHLVEKLAD IENGARDQQSDALV+DLNNHFEKCQQLLNSISGSLSSKAMTVEGQKK
Sbjct: 159 FHLFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKK 218

Query: 121 KLEEHEQLLNHRRELIGKYKNSVEELVKGE 148
           KLEEHEQLLNHRRELIGKYKNSVEELVKGE
Sbjct: 219 KLEEHEQLLNHRRELIGKYKNSVEELVKGE 244

[Close]

BLAST of Spg006274 vs. NCBI nr
Match: XP_022944890.1 (mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata])

HSP 1 Score: 220.3 bits (560), Expect = 1.1e-53
Identity = 138/148 (93.24%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   QLQPQHFP-QQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFH 60
           QLQPQHFP QQQQQQQQQQQYHFQQQ      QQQQQQQ+QQQQQQQQYHQHQSLASHFH
Sbjct: 101 QLQPQHFPQQQQQQQQQQQQYHFQQQ------QQQQQQQQQQQQQQQQYHQHQSLASHFH 160

Query: 61  LFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKL 120
           LFHLVEKLAD IENGARDQQSDALV+DLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKL
Sbjct: 161 LFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKL 220

Query: 121 EEHEQLLNHRRELIGKYKNSVEELVKGE 148
           EEHEQLLNHRRELIGKYKNSVEELVKGE
Sbjct: 221 EEHEQLLNHRRELIGKYKNSVEELVKGE 242

[Close]

BLAST of Spg006274 vs. NCBI nr
Match: KAG6574160.1 (Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 219.2 bits (557), Expect = 2.4e-53
Identity = 136/147 (92.52%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 1   QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHL 60
           QLQPQHFP QQQQQQQQQQYHFQQ       QQQQQQQ+QQQQQQQQYHQHQSLASHFHL
Sbjct: 102 QLQPQHFP-QQQQQQQQQQYHFQQ-------QQQQQQQQQQQQQQQQYHQHQSLASHFHL 161

Query: 61  FHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE 120
           FHLVEKLAD IENGARDQQSDALV+DLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE
Sbjct: 162 FHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE 221

Query: 121 EHEQLLNHRRELIGKYKNSVEELVKGE 148
           EHEQLLNHRRELIGKYKNSVEELVKGE
Sbjct: 222 EHEQLLNHRRELIGKYKNSVEELVKGE 240

[Close]

BLAST of Spg006274 vs. ExPASy Swiss-Prot
Match: Q8RWA2 (Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX=3702 GN=MED9 PE=1 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.7e-25
Identity = 98/178 (55.06%), Postives = 114/178 (64.04%), Query Frame = 0


Query: 1   QLQPQHFPQQQQQQQQQQQYHF----QQQQQQRLLQQ----------------------- 60
           Q QPQ   + QQ QQ QQQ HF    Q QQQQRLLQ                        
Sbjct: 66  QFQPQQQQEMQQYQQFQQQQHFIQQQQFQQQQRLLQSPPLQPQSLQSPPPQQTMVHTPQS 125

Query: 61  ----QQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNN 120
                QQQQ+  Q   Q   QHQSLASHFHL+ +VEKLAD IENG RDQ SDALV++LN+
Sbjct: 126 MMHTPQQQQQLVQTPVQTPQQHQSLASHFHLYPMVEKLADVIENGTRDQNSDALVNELNS 185

Query: 121 HFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 148
           HF+KCQQLLNSISGSL SK MTV+GQK+ +EE EQLL  RR+LI +Y+ S+EE+V  E
Sbjct: 186 HFDKCQQLLNSISGSLGSKTMTVDGQKRNVEESEQLLQQRRDLIVEYRKSIEEIVTME 243

[Close]

BLAST of Spg006274 vs. ExPASy TrEMBL
Match: A0A6J1D301 (Mediator of RNA polymerase II transcription subunit 9 OS=Momordica charantia OX=3673 GN=LOC111016860 PE=3 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 1.4e-54
Identity = 139/150 (92.67%), Postives = 144/150 (96.00%), Query Frame = 0


Query: 1   QLQPQHFPQQQQQQQQQQQYHF---QQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASH 60
           QLQPQHFP   QQQQQQQQYHF   QQQQQQRLLQQQQQQQ+QQQQQQQQYHQHQSLASH
Sbjct: 91  QLQPQHFP---QQQQQQQQYHFQQQQQQQQQRLLQQQQQQQQQQQQQQQQYHQHQSLASH 150

Query: 61  FHLFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKK 120
           FHLFHLVEKLADAIENGARDQQSDALV+DLNNHFEKCQQLLNSISGSLSSKAMTV+GQKK
Sbjct: 151 FHLFHLVEKLADAIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVDGQKK 210

Query: 121 KLEEHEQLLNHRRELIGKYKNSVEELVKGE 148
           KLEEH+QLLNHRRELIGKYKNSVEELVKG+
Sbjct: 211 KLEEHKQLLNHRRELIGKYKNSVEELVKGD 237

[Close]

BLAST of Spg006274 vs. ExPASy TrEMBL
Match: A0A6J1FZC2 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111449284 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 5.3e-54
Identity = 138/148 (93.24%), Postives = 140/148 (94.59%), Query Frame = 0


Query: 1   QLQPQHFP-QQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFH 60
           QLQPQHFP QQQQQQQQQQQYHFQQQ      QQQQQQQ+QQQQQQQQYHQHQSLASHFH
Sbjct: 101 QLQPQHFPQQQQQQQQQQQQYHFQQQ------QQQQQQQQQQQQQQQQYHQHQSLASHFH 160

Query: 61  LFHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKL 120
           LFHLVEKLAD IENGARDQQSDALV+DLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKL
Sbjct: 161 LFHLVEKLADTIENGARDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKL 220

Query: 121 EEHEQLLNHRRELIGKYKNSVEELVKGE 148
           EEHEQLLNHRRELIGKYKNSVEELVKGE
Sbjct: 221 EEHEQLLNHRRELIGKYKNSVEELVKGE 242

[Close]

BLAST of Spg006274 vs. ExPASy TrEMBL
Match: A0A6J1K651 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111492669 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.2e-51
Identity = 133/148 (89.86%), Postives = 139/148 (93.92%), Query Frame = 0


Query: 1   QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHL 60
           Q+QPQHFP QQQQQQQQQQYHF QQQQQRLLQQQQQQQ+     QQQYHQHQSLASHFHL
Sbjct: 102 QMQPQHFP-QQQQQQQQQQYHF-QQQQQRLLQQQQQQQK-----QQQYHQHQSLASHFHL 161

Query: 61  FHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE 120
           FHLVEKLADAIE G RDQQSDALV+DLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE
Sbjct: 162 FHLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE 221

Query: 121 EHEQLLNHRRELIGKYKNSVEELVKGEP 149
           EHEQLL++RRELIGKYK+SVEELVKGEP
Sbjct: 222 EHEQLLSYRRELIGKYKSSVEELVKGEP 242

[Close]

BLAST of Spg006274 vs. ExPASy TrEMBL
Match: A0A6J1GCY0 (mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111452828 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.6e-50
Identity = 130/148 (87.84%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 1   QLQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHL 60
           Q+QPQHFPQQQQQQQQQQQ +  QQQQQRLLQQQQQQQ+     QQQYHQHQSLASHFHL
Sbjct: 100 QMQPQHFPQQQQQQQQQQQQYHFQQQQQRLLQQQQQQQK-----QQQYHQHQSLASHFHL 159

Query: 61  FHLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE 120
           FHLVEKLADAIE G RDQQSDALV+DLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE
Sbjct: 160 FHLVEKLADAIETGVRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLE 219

Query: 121 EHEQLLNHRRELIGKYKNSVEELVKGEP 149
           EHEQLL++RRELIGKYK+SVEEL KGEP
Sbjct: 220 EHEQLLSYRRELIGKYKSSVEELGKGEP 242

[Close]

BLAST of Spg006274 vs. ExPASy TrEMBL
Match: A0A1S4DWQ6 (Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis melo OX=3656 GN=LOC103490024 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 6.1e-50
Identity = 132/147 (89.80%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 2   LQPQHFPQQQQQQQQQQQYHFQQQQQQRLLQQQQQQQRQQQQQQQQYHQHQSLASHFHLF 61
           LQ Q   QQQQQQQQQQQ   QQQQQQ+  QQQQQQQ+QQQQQQQQYHQHQSLASHFHL 
Sbjct: 112 LQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQYHQHQSLASHFHLL 171

Query: 62  HLVEKLADAIENGARDQQSDALVHDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 121
           HLVEKLADAIENG RDQQSDALV+DLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE
Sbjct: 172 HLVEKLADAIENGTRDQQSDALVNDLNNHFEKCQQLLNSISGSLSSKAMTVEGQKKKLEE 231

Query: 122 HEQLLNHRRELIGKYKNSVEELVKGEP 149
           HEQLL+HRRELIGKYKNSVEELVKGEP
Sbjct: 232 HEQLLSHRRELIGKYKNSVEELVKGEP 258

[Close]

BLAST of Spg006274 vs. TAIR 10
Match: AT1G55080.1 (MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G29580.1); Has 67203 Blast hits to 25757 proteins in 1293 species: Archae - 12; Bacteria - 4374; Metazoa - 24340; Fungi - 7940; Plants - 5927; Viruses - 273; Other Eukaryotes - 24337 (source: NCBI BLink). )

HSP 1 Score: 117.1 bits (292), Expect = 1.2e-26
Identity = 98/178 (55.06%), Postives = 114/178 (64.04%), Query Frame = 0


Query: 1   QLQPQHFPQQQQQQQQQQQYHF----QQQQQQRLLQQ----------------------- 60
           Q QPQ   + QQ QQ QQQ HF    Q QQQQRLLQ                        
Sbjct: 66  QFQPQQQQEMQQYQQFQQQQHFIQQQQFQQQQRLLQSPPLQPQSLQSPPPQQTMVHTPQS 125

Query: 61  ----QQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNN 120
                QQQQ+  Q   Q   QHQSLASHFHL+ +VEKLAD IENG RDQ SDALV++LN+
Sbjct: 126 MMHTPQQQQQLVQTPVQTPQQHQSLASHFHLYPMVEKLADVIENGTRDQNSDALVNELNS 185

Query: 121 HFEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGE 148
           HF+KCQQLLNSISGSL SK MTV+GQK+ +EE EQLL  RR+LI +Y+ S+EE+V  E
Sbjct: 186 HFDKCQQLLNSISGSLGSKTMTVDGQKRNVEESEQLLQQRRDLIVEYRKSIEEIVTME 243

[Close]

BLAST of Spg006274 vs. TAIR 10
Match: AT1G29580.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55080.1); Has 28 Blast hits to 28 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 7.4e-08
Identity = 53/118 (44.92%), Postives = 62/118 (52.54%), Query Frame = 0


Query: 31  LQQQQQQQRQQQQQQQQYHQHQSLASHFHLFHLVEKLADAIENGARDQQSDALVHDLNNH 90
           +Q+ Q    QQQQ  Q   QHQ+LAS  HL+ LVE L D  E+ ARDQ SDAL  D+   
Sbjct: 1   MQKPQSHTTQQQQSVQTPLQHQTLAS--HLYPLVENLKDVTESRARDQNSDALYVDV--- 60

Query: 91  FEKCQQLLNSISGSLSSKAMTVEGQKKKLEEHEQLLNHRRELIGKYKNSVEELVKGEP 149
                                   QK+ LEE EQLL  R ELI +YK SVEE+VK EP
Sbjct: 61  ------------------------QKQNLEESEQLLQQRMELIEEYKKSVEEIVKKEP 89

The following BLAST results are available for this feature:

BLAST of Spg006274 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903145.1	9.9e-55	84.12	mediator of RNA polymerase II transcription subunit 9 [Benincasa hispida]	[more]
XP_022148099.1	2.9e-54	92.67	mediator of RNA polymerase II transcription subunit 9 [Momordica charantia]	[more]
XP_023542032.1	6.4e-54	93.33	mediator of RNA polymerase II transcription subunit 9-like [Cucurbita pepo subsp...	[more]
XP_022944890.1	1.1e-53	93.24	mediator of RNA polymerase II transcription subunit 9-like [Cucurbita moschata]	[more]
KAG6574160.1	2.4e-53	92.52	Mediator of RNA polymerase II transcription subunit 9, partial [Cucurbita argyro...	[more]

BLAST of Spg006274 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWA2	1.7e-25	55.06	Mediator of RNA polymerase II transcription subunit 9 OS=Arabidopsis thaliana OX...	[more]

BLAST of Spg006274 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D301	1.4e-54	92.67	Mediator of RNA polymerase II transcription subunit 9 OS=Momordica charantia OX=...	[more]
A0A6J1FZC2	5.3e-54	93.24	mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata...	[more]
A0A6J1K651	3.2e-51	89.86	mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita maxima O...	[more]
A0A6J1GCY0	4.6e-50	87.84	mediator of RNA polymerase II transcription subunit 9-like OS=Cucurbita moschata...	[more]
A0A1S4DWQ6	6.1e-50	89.80	Mediator of RNA polymerase II transcription subunit 9 OS=Cucumis melo OX=3656 GN...	[more]

BLAST of Spg006274 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G55080.1	1.2e-26	55.06	MED9; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G2958...	[more]
AT1G29580.1	7.4e-08	44.92	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 23..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..51
IPR011425	Mediator of RNA polymerase II transcription subunit 9	PFAM	PF07544	Med9	coord: 71..140 e-value: 1.9E-7 score: 31.1
IPR038790	Mediator of RNA polymerase II transcription subunit 9, plant	PANTHER	PTHR37188	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT-RELATED	coord: 25..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006274.1	Spg006274.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity