Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCTTGGTCAGGCTGGAGAACTTTGAACCTCTTGTGGATGCAACCTCCATACTCGCTCAAATCGCCAAGGATGCCGACGCCAAATTCACTCCGAGGATGTTCTTGATCATCGCCTCGCACAGTTCCCCTCGGTTCGTCGCGACGCTGCAGATGTCGCGTCGATTCTTTACGAACTATTTGATCGATCATAATCACGTTTCGAGGATCTCCCTTGAATCCTTCCATGATGCTATGTTGGATGGAGGGAGTTACTCTTCAATGACAATGCATCTTCTTGAAAACATAAATCAAATGGTCCTTAGGTTTGATGCTTCAGGTGAGTATATAAATAATACACATTTCTTCATAACAATGAATCTTGGTTCTTATTTCTTTGATTGATTATATTCGTTTGGTTTAATTTCAAGAACACAGTTAATTCAATAATTTGTTGATATCCAATCTTAGGGCATGCGCCACCGTTGCATCATGAATTGACATTGTCGCCTTCGCAAGAAGACGATATATTGGGTCAAGTTACATATGGGAAATATTTCACAGTTCATTCTAAAGAATTAAGACGTATTATAAAAGAATTGCCACTCTTCCAAGCGGATTCAGGTATTGTTAAACTACTAGAGCTATTCCACTCCCTGTTTAACCGGGAGAATGAGTTGACTAGTTAAAATATATCTCTTGTTTGTTTGTCACAGTTTGTGTTACGGTAACGAGTTCACGAATCAAGTTCTCTATTGCATCTAAGGAGATTATTCTTACGAAAGAGGTACGGTTCATTTGCTAA
mRNA sequence
ATGTTCTTGGTCAGGCTGGAGAACTTTGAACCTCTTGTGGATGCAACCTCCATACTCGCTCAAATCGCCAAGGATGCCGACGCCAAATTCACTCCGAGGATGTTCTTGATCATCGCCTCGCACAGTTCCCCTCGGTTCGTCGCGACGCTGCAGATGTCGCGTCGATTCTTTACGAACTATTTGATCGATCATAATCACGTTTCGAGGATCTCCCTTGAATCCTTCCATGATGCTATGTTGGATGGAGGGAGTTACTCTTCAATGACAATGCATCTTCTTGAAAACATAAATCAAATGGTCCTTAGGTTTGATGCTTCAGGGCATGCGCCACCGTTGCATCATGAATTGACATTGTCGCCTTCGCAAGAAGACGATATATTGGGTCAAGTTACATATGGGAAATATTTCACAGTTCATTCTAAAGAATTAAGACGTATTATAAAAGAATTGCCACTCTTCCAAGCGGATTCAGTTTGTGTTACGGTAACGAGTTCACGAATCAAGTTCTCTATTGCATCTAAGGAGATTATTCTTACGAAAGAGGTACGGTTCATTTGCTAA
Coding sequence (CDS)
ATGTTCTTGGTCAGGCTGGAGAACTTTGAACCTCTTGTGGATGCAACCTCCATACTCGCTCAAATCGCCAAGGATGCCGACGCCAAATTCACTCCGAGGATGTTCTTGATCATCGCCTCGCACAGTTCCCCTCGGTTCGTCGCGACGCTGCAGATGTCGCGTCGATTCTTTACGAACTATTTGATCGATCATAATCACGTTTCGAGGATCTCCCTTGAATCCTTCCATGATGCTATGTTGGATGGAGGGAGTTACTCTTCAATGACAATGCATCTTCTTGAAAACATAAATCAAATGGTCCTTAGGTTTGATGCTTCAGGGCATGCGCCACCGTTGCATCATGAATTGACATTGTCGCCTTCGCAAGAAGACGATATATTGGGTCAAGTTACATATGGGAAATATTTCACAGTTCATTCTAAAGAATTAAGACGTATTATAAAAGAATTGCCACTCTTCCAAGCGGATTCAGTTTGTGTTACGGTAACGAGTTCACGAATCAAGTTCTCTATTGCATCTAAGGAGATTATTCTTACGAAAGAGGTACGGTTCATTTGCTAA
Protein sequence
MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNYLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFDASGHAPPLHHELTLSPSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTKEVRFIC
Homology
BLAST of Spg006200 vs. NCBI nr
Match:
XP_008458682.1 (PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo])
HSP 1 Score: 255.4 bits (651), Expect = 3.9e-64
Identity = 129/182 (70.88%), Postives = 152/182 (83.52%), Query Frame = 0
Query: 1 MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNY 60
MFLVRLE FEPL+DATS+LAQ+AKDAD KFTP M +II S+ SP+FVATLQ+SRR FTN+
Sbjct: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60
Query: 61 LIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFDASGH-APPLHHELTLS 120
+DHN S++SL+ FHDAMLDGGS+SSMT+HLL+ NQMVLRF+ H PPLHHEL LS
Sbjct: 61 SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120
Query: 121 PSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILT 180
P Q ++ LGQV YG +FTV S+ELRRIIKELPLF D+V VTVT S++KFSI SKEIILT
Sbjct: 121 PPQAEN-LGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILT 180
Query: 181 KE 182
KE
Sbjct: 181 KE 181
BLAST of Spg006200 vs. NCBI nr
Match:
XP_016903187.1 (PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo])
HSP 1 Score: 247.7 bits (631), Expect = 8.0e-62
Identity = 122/187 (65.24%), Postives = 156/187 (83.42%), Query Frame = 0
Query: 1 MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNY 60
MFLVRL++F+PL DATS LAQIA++AD KFTP F IIAS+ SPRFVA LQM+ F NY
Sbjct: 3 MFLVRLKDFDPLFDATSRLAQIAREADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFINY 62
Query: 61 LIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFDASGHAPPLHHELTLSP 120
+D++H SRISLESFHDA+LDGG+ SMT+HLL NI Q++LRF++S HAP +HHEL+L+P
Sbjct: 63 KVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSSHAPKVHHELSLTP 122
Query: 121 SQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTK 180
SQE+D LG+V Y K+F++ SK+LRR+I+ LP+F DS+CVT T S++KFSIASKEI+LTK
Sbjct: 123 SQEED-LGEVDYAKFFSIDSKDLRRVIRNLPIFHGDSICVTATGSQVKFSIASKEIVLTK 182
Query: 181 EVR-FIC 187
E + FIC
Sbjct: 183 EKKLFIC 188
BLAST of Spg006200 vs. NCBI nr
Match:
KAG7013723.1 (hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 232.6 bits (592), Expect = 2.7e-57
Identity = 121/182 (66.48%), Postives = 149/182 (81.87%), Query Frame = 0
Query: 1 MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNY 60
MFLV+L+ FEPL+DATS+L QI+KDAD +FT M +IASH+SPRFVATLQMS R FTNY
Sbjct: 1 MFLVQLQQFEPLLDATSLLTQISKDADVRFTAFMLSLIASHTSPRFVATLQMSCRLFTNY 60
Query: 61 LIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFD-ASGHAPPLHHELTLS 120
+DH + S++SLESFHDAMLDGGS+SSM++H+LE+ QM+LR++ S + PPLH EL LS
Sbjct: 61 SVDHYYSSKVSLESFHDAMLDGGSFSSMSIHVLESRQQMILRYENPSSNDPPLHLELPLS 120
Query: 121 PSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILT 180
P Q + LGQV YGK+FTV+SK LR+IIKELPLF D V V TS+R+KFSIASKEI +T
Sbjct: 121 PPQAES-LGQVEYGKFFTVNSKVLRKIIKELPLFHDDLVRVAATSTRVKFSIASKEITVT 180
Query: 181 KE 182
KE
Sbjct: 181 KE 181
BLAST of Spg006200 vs. NCBI nr
Match:
XP_031744160.1 (uncharacterized protein LOC116404808 [Cucumis sativus])
HSP 1 Score: 230.7 bits (587), Expect = 1.0e-56
Identity = 114/181 (62.98%), Postives = 142/181 (78.45%), Query Frame = 0
Query: 1 MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNY 60
MFLVRL+NFEP ATS LA IA++AD KFTP F I S+ PRFVA L M+ F NY
Sbjct: 1 MFLVRLKNFEPFFHATSRLALIAREADVKFTPLFFSITVSNQFPRFVAYLVMTYNCFINY 60
Query: 61 LIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFDASGHAPPLHHELTLSP 120
+D++H SRISLESFHDA+LDGG SMT+HLL NINQM+LRF++S HAP + HEL+L P
Sbjct: 61 KVDNDHTSRISLESFHDALLDGGGSPSMTIHLLANINQMILRFESSSHAPQVRHELSLKP 120
Query: 121 SQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTK 180
SQE+D LG++ Y K+F++ SK LRR+I+ LP+F DS+CVT T S++KFSIASKEI+LTK
Sbjct: 121 SQEED-LGEIDYAKFFSIDSKALRRVIRNLPIFHGDSICVTATRSQVKFSIASKEIVLTK 180
Query: 181 E 182
E
Sbjct: 181 E 180
BLAST of Spg006200 vs. NCBI nr
Match:
XP_038875055.1 (uncharacterized protein LOC120067580 [Benincasa hispida])
HSP 1 Score: 229.9 bits (585), Expect = 1.7e-56
Identity = 121/182 (66.48%), Postives = 146/182 (80.22%), Query Frame = 0
Query: 1 MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNY 60
MFLV+L NFEPL+DATS LAQI+ AD KFTP F +IA + SPRFVATLQ+S++ FTNY
Sbjct: 1 MFLVKLTNFEPLLDATSYLAQISNYADVKFTPLEFYLIAPYPSPRFVATLQLSQKCFTNY 60
Query: 61 LIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFDA-SGHAPPLHHELTLS 120
+DH H S++ LESFHDA+LDGGS++SMT+HLLE NQM+LRF S PPLHHELT S
Sbjct: 61 SVDHEHTSKVDLESFHDAILDGGSFASMTIHLLEKPNQMILRFQTPSSEIPPLHHELTFS 120
Query: 121 PSQ--EDDILGQVTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASKEI 179
P Q +++I GQ+ GK+F V S+ LRRIIKELP+FQ DS VCV VTSS+IKFSIASKEI
Sbjct: 121 PPQLADNNIGGQLEEGKFFIVKSEALRRIIKELPIFQDDSVVCVGVTSSQIKFSIASKEI 180
BLAST of Spg006200 vs. ExPASy TrEMBL
Match:
A0A1S3C8J1 (uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=4 SV=1)
HSP 1 Score: 255.4 bits (651), Expect = 1.9e-64
Identity = 129/182 (70.88%), Postives = 152/182 (83.52%), Query Frame = 0
Query: 1 MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNY 60
MFLVRLE FEPL+DATS+LAQ+AKDAD KFTP M +II S+ SP+FVATLQ+SRR FTN+
Sbjct: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60
Query: 61 LIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFDASGH-APPLHHELTLS 120
+DHN S++SL+ FHDAMLDGGS+SSMT+HLL+ NQMVLRF+ H PPLHHEL LS
Sbjct: 61 SVDHNKSSKVSLQPFHDAMLDGGSFSSMTIHLLDTTNQMVLRFETPSHDVPPLHHELALS 120
Query: 121 PSQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILT 180
P Q ++ LGQV YG +FTV S+ELRRIIKELPLF D+V VTVT S++KFSI SKEIILT
Sbjct: 121 PPQAEN-LGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILT 180
Query: 181 KE 182
KE
Sbjct: 181 KE 181
BLAST of Spg006200 vs. ExPASy TrEMBL
Match:
A0A1S4E4N8 (uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=4 SV=1)
HSP 1 Score: 247.7 bits (631), Expect = 3.9e-62
Identity = 122/187 (65.24%), Postives = 156/187 (83.42%), Query Frame = 0
Query: 1 MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNY 60
MFLVRL++F+PL DATS LAQIA++AD KFTP F IIAS+ SPRFVA LQM+ F NY
Sbjct: 3 MFLVRLKDFDPLFDATSRLAQIAREADIKFTPLFFSIIASNRSPRFVAYLQMTHHCFINY 62
Query: 61 LIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFDASGHAPPLHHELTLSP 120
+D++H SRISLESFHDA+LDGG+ SMT+HLL NI Q++LRF++S HAP +HHEL+L+P
Sbjct: 63 KVDNDHTSRISLESFHDALLDGGASPSMTIHLLANIKQLILRFESSSHAPKVHHELSLTP 122
Query: 121 SQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTK 180
SQE+D LG+V Y K+F++ SK+LRR+I+ LP+F DS+CVT T S++KFSIASKEI+LTK
Sbjct: 123 SQEED-LGEVDYAKFFSIDSKDLRRVIRNLPIFHGDSICVTATGSQVKFSIASKEIVLTK 182
Query: 181 EVR-FIC 187
E + FIC
Sbjct: 183 EKKLFIC 188
BLAST of Spg006200 vs. ExPASy TrEMBL
Match:
A0A5D3DZ07 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1810G00070 PE=4 SV=1)
HSP 1 Score: 223.4 bits (568), Expect = 7.9e-55
Identity = 121/186 (65.05%), Postives = 151/186 (81.18%), Query Frame = 0
Query: 1 MFLVRLENFEPLVDATSILAQIAKD-ADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTN 60
MFLV+L+NF+PL+DATS LAQI+ D AD KFTP F IIASH SPRF+ATLQ+S ++FT
Sbjct: 1 MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
Query: 61 YLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFDA-SGHAPPLHHELTL 120
+ +D++H S++SLESFHDA+LDGGS++SMT+HLL+ NQM+LRFD S PLHHELTL
Sbjct: 61 FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
Query: 121 SPSQ-EDDILGQ--VTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASK 180
SP Q ED+ +GQ + KYF V SK LRRIIK+LP+FQ DS + V VT+SR+KFSIASK
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSIISVDVTNSRVKFSIASK 180
BLAST of Spg006200 vs. ExPASy TrEMBL
Match:
A0A1S3CL88 (uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=4 SV=1)
HSP 1 Score: 223.4 bits (568), Expect = 7.9e-55
Identity = 121/186 (65.05%), Postives = 151/186 (81.18%), Query Frame = 0
Query: 1 MFLVRLENFEPLVDATSILAQIAKD-ADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTN 60
MFLV+L+NF+PL+DATS LAQI+ D AD KFTP F IIASH SPRF+ATLQ+S ++FT
Sbjct: 1 MFLVKLKNFDPLLDATSFLAQISFDNADLKFTPSKFFIIASHRSPRFIATLQLSPQWFTT 60
Query: 61 YLIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFDA-SGHAPPLHHELTL 120
+ +D++H S++SLESFHDA+LDGGS++SMT+HLL+ NQM+LRFD S PLHHELTL
Sbjct: 61 FSVDNDHSSKVSLESFHDAILDGGSFASMTIHLLDKTNQMILRFDTPSSEIQPLHHELTL 120
Query: 121 SPSQ-EDDILGQ--VTYGKYFTVHSKELRRIIKELPLFQADS-VCVTVTSSRIKFSIASK 180
SP Q ED+ +GQ + KYF V SK LRRIIK+LP+FQ DS + V VT+SR+KFSIASK
Sbjct: 121 SPPQAEDNQIGQHELDERKYFIVKSKALRRIIKDLPIFQNDSIISVDVTNSRVKFSIASK 180
BLAST of Spg006200 vs. ExPASy TrEMBL
Match:
A0A5D3BTK3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00820 PE=4 SV=1)
HSP 1 Score: 216.9 bits (551), Expect = 7.4e-53
Identity = 115/182 (63.19%), Postives = 135/182 (74.18%), Query Frame = 0
Query: 1 MFLVRLENFEPLVDATSILAQIAKDADAKFTPRMFLIIASHSSPRFVATLQMSRRFFTNY 60
MFLVRLE FEPL+DATS+LAQ+AKDAD KFTP M +II S+ SP+FVATLQ+SRR FTN+
Sbjct: 1 MFLVRLEQFEPLIDATSLLAQVAKDADVKFTPLMLMIIVSNRSPQFVATLQLSRRLFTNF 60
Query: 61 LIDHNHVSRISLESFHDAMLDGGSYSSMTMHLLENINQMVLRFDASGHAPPLHHELTLSP 120
+DHN S++SL+ FHDAMLDGGS+ PPLHHEL LSP
Sbjct: 61 SVDHNKSSKVSLQPFHDAMLDGGSHD----------------------VPPLHHELALSP 120
Query: 121 SQEDDILGQVTYGKYFTVHSKELRRIIKELPLFQADSVCVTVTSSRIKFSIASKEIILTK 180
Q ++ LGQV YG +FTV S+ELRRIIKELPLF D+V VTVT S++KFSI SKEIILTK
Sbjct: 121 PQAEN-LGQVEYGNFFTVTSRELRRIIKELPLFHQDTVSVTVTGSQVKFSIQSKEIILTK 159
Query: 181 EV 183
EV
Sbjct: 181 EV 159
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_008458682.1 | 3.9e-64 | 70.88 | PREDICTED: uncharacterized protein LOC103498010 [Cucumis melo] | [more] |
XP_016903187.1 | 8.0e-62 | 65.24 | PREDICTED: uncharacterized protein LOC103502263 [Cucumis melo] | [more] |
KAG7013723.1 | 2.7e-57 | 66.48 | hypothetical protein SDJN02_23890, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
XP_031744160.1 | 1.0e-56 | 62.98 | uncharacterized protein LOC116404808 [Cucumis sativus] | [more] |
XP_038875055.1 | 1.7e-56 | 66.48 | uncharacterized protein LOC120067580 [Benincasa hispida] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A1S3C8J1 | 1.9e-64 | 70.88 | uncharacterized protein LOC103498010 OS=Cucumis melo OX=3656 GN=LOC103498010 PE=... | [more] |
A0A1S4E4N8 | 3.9e-62 | 65.24 | uncharacterized protein LOC103502263 OS=Cucumis melo OX=3656 GN=LOC103502263 PE=... | [more] |
A0A5D3DZ07 | 7.9e-55 | 65.05 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A1S3CL88 | 7.9e-55 | 65.05 | uncharacterized protein LOC103502250 OS=Cucumis melo OX=3656 GN=LOC103502250 PE=... | [more] |
A0A5D3BTK3 | 7.4e-53 | 63.19 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |