Spg006119 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg006119
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Glycine rich protein
Location	scaffold4: 5863124 .. 5863991 (-)
RNA-Seq Expression	Spg006119
Synteny	Spg006119

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCCAAAATCAAGTTTCTAACAGAAAAGAAAATGAGTTCTAAAGCTTTTGCTTTCCTCGGCCTTCTCTTTGCCATTGTCGTTCTCATATCAGCGGAGGCGGTGGCGGTGGCAGCGGCGAGAGACCTCGCTCCGACTCCCAAGAATAACGATGGTGAGAGCTTCCCTCTTCATTATTCATCCTATTAGGGTTGGAGCCATAAATTCTCATAAACCAAAACAAAATTTTATATTCGAACTTTTTATATATATATATATAATACAATTTTAATGTAAGACAACGAATTACCTCACTATGTTTTTACACTTACATTTAGTGAGTTCAAACTTCTGACCTCTTGACTGAGAATACATACTAATAACTGTTTAGCTATGCTCATTTTGACCGATATATTTGTTTTTTGGTTGCTAAATCTAAAGTTTTTTTTATTGATACTGTTGTAGTGGACACAATGAAGATGAATGGCGCAGAAGATGGCAAGTATGGTTGGAGAGGAAAAAGCCTACAATACTTTTTCCCCAGACATGGAAACTATGGTGTCTACCCTGACTACCACGGCGACTACAGTGAACCCGGAGTCCGTATAGGTCGATGCAGGTACGGTTGCTGCGGTAACCGCGACGACCGTGGGCAGTGCAGCCGGTGCTGCAACGGCCCTTTCGGAGAAGTTGTGGATGCAAAACCCTAAGGCAGCTTATAGGGTTTGGGTAGAAAGGATGGACAGTTTGAAGTCTAGGTTTGGAGAAAGTATAAAAGTTAAATAAATATGCATGGGGAATGGAATGCCTGGGTTTTCCTTTCCCTTGTGTTTGGGTTTGAATGTTTTTTAAAATTAATATAATTAAGTAAAAAAAAATATTTAATGGGAC

mRNA sequence

ATGAGTTCTAAAGCTTTTGCTTTCCTCGGCCTTCTCTTTGCCATTGTCGTTCTCATATCAGCGGAGGCGGTGGCGGTGGCAGCGGCGAGAGACCTCGCTCCGACTCCCAAGAATAACGATGTGGACACAATGAAGATGAATGGCGCAGAAGATGGCAAGTATGGTTGGAGAGGAAAAAGCCTACAATACTTTTTCCCCAGACATGGAAACTATGGTGTCTACCCTGACTACCACGGCGACTACAGTGAACCCGGAGTCCGTATAGGTCGATGCAGGTACGGTTGCTGCGGTAACCGCGACGACCGTGGGCAGTGCAGCCGGTGCTGCAACGGCCCTTTCGGAGAAGTTGTGGATGCAAAACCCTAA

Coding sequence (CDS)

ATGAGTTCTAAAGCTTTTGCTTTCCTCGGCCTTCTCTTTGCCATTGTCGTTCTCATATCAGCGGAGGCGGTGGCGGTGGCAGCGGCGAGAGACCTCGCTCCGACTCCCAAGAATAACGATGTGGACACAATGAAGATGAATGGCGCAGAAGATGGCAAGTATGGTTGGAGAGGAAAAAGCCTACAATACTTTTTCCCCAGACATGGAAACTATGGTGTCTACCCTGACTACCACGGCGACTACAGTGAACCCGGAGTCCGTATAGGTCGATGCAGGTACGGTTGCTGCGGTAACCGCGACGACCGTGGGCAGTGCAGCCGGTGCTGCAACGGCCCTTTCGGAGAAGTTGTGGATGCAAAACCCTAA

Protein sequence

MSSKAFAFLGLLFAIVVLISAEAVAVAAARDLAPTPKNNDVDTMKMNGAEDGKYGWRGKSLQYFFPRHGNYGVYPDYHGDYSEPGVRIGRCRYGCCGNRDDRGQCSRCCNGPFGEVVDAKP

Homology

[Close]

BLAST of Spg006119 vs. NCBI nr
Match: XP_022136252.1 (glycine-rich cell wall structural protein-like [Momordica charantia])

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-09
Identity = 61/148 (41.22%), Postives = 70/148 (47.30%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVLISAEAVAVAAARDLAPT---PKNNDVDTMKMNGAEDGKYGWR 60
           MSSKAFAFLGLLFAIVV+I + AV    A  LAPT     NN+V        ED K+ W 
Sbjct: 1   MSSKAFAFLGLLFAIVVVICSTAV----ANSLAPTSIDEDNNEVTAETNRAVEDAKFSWG 60

Query: 61  GKSLQYF------------FPRHGNYGVYPDYHGDYSEPGVRIGRCRY-------GCCGN 120
           G     F            +PR G YG + DY GDY   G   GR  Y       G CG 
Sbjct: 61  GSFGGGFGRDYPGPGGYGGYPRRGGYGGFGDY-GDYPGRGGYPGRGGYDGFRPGGGLCGQ 120

Query: 121 R----DDRGQCSRCCN-GPFGEVVDAKP 122
                  RG C RCC   P G + +A+P
Sbjct: 121 NGYCCGFRGGCDRCCRYYPGGGLAEARP 143

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BLAST of Spg006119 vs. NCBI nr
Match: KAF3456034.1 (hypothetical protein FNV43_RR00677 [Rhamnella rubrinervis])

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 54/123 (43.90%), Postives = 66/123 (53.66%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVLISAEAVAVAAARDLAPT-PKNNDVDTM-KMNGAEDGKYGWRG 60
           M SKAF FLGLL AIV+LIS+E     +ARDLA T P N +VD + K +G  + +YG   
Sbjct: 1   MGSKAFLFLGLLLAIVLLISSE----VSARDLAETSPDNKNVDAIGKPDGVSETQYGG-- 60

Query: 61  KSLQYFFPRHGNYGVYPDYHGDYSEPGVRIGRCRYGCCGNRDDRGQCSRCCNGPFGEVVD 120
                 +P  G  G    Y+G     G   G C YGCC        CSRCC+   GE VD
Sbjct: 61  ------YPGGGYNGGRGGYNGGSPRHGGGGGSCYYGCCRRSYYGRGCSRCCSYA-GEAVD 110

Query: 121 AKP 122
           A+P
Sbjct: 121 AEP 110

[Close]

BLAST of Spg006119 vs. NCBI nr
Match: XP_038886926.1 (cold and drought-regulated protein CORA-like isoform X1 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-07
Identity = 52/110 (47.27%), Postives = 56/110 (50.91%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVLISAEAVAVAAARDLAPTPKNNDVD-----TMKMNGAEDGKYG 60
           MSSKAF FLGLL A V+LIS+E     AARDLA T    D D     T++ NG ED KYG
Sbjct: 1   MSSKAFVFLGLLLAFVLLISSE----VAARDLAETSSKKDNDDVAEVTVETNGVEDAKYG 60

Query: 61  WRGKSLQYFFPR---------HGNYGVYPDYHGDYSEPGVRIGRCRYGCC 97
             G    Y   R         HG YG    Y G Y   G R GRC Y CC
Sbjct: 61  -GGYDRGYGGGRGGYGHGGYGHGGYGGRGGYGGGYRR-GCRYGRCGYRCC 104

[Close]

BLAST of Spg006119 vs. NCBI nr
Match: PON48481.1 (Glycine rich protein [Parasponia andersonii])

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-07
Identity = 53/125 (42.40%), Postives = 65/125 (52.00%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVLISAEAVAVAAARDLAPTPKNNDVDTMKMNGAEDGKY-GWRGK 60
           M SKAF +LGLL A+V+LIS+E     AA D+A T  +N      +NG  D KY G+ G 
Sbjct: 1   MGSKAFLYLGLLLAVVLLISSE----VAAGDVAETSTDNKNVDATLNGVNDAKYGGYNGG 60

Query: 61  SLQYFFPRHGNY-GVYPD---YHGDYSEPGVRIGRCRYGCCGNRDDRGQCSRCCNGPFGE 120
              Y    HG   G YP      GDY   G   GRC +GCC       +C RCC+   GE
Sbjct: 61  YPGYGGGDHGGRGGDYPGGGRRGGDYPGGGRGRGRCYHGCCRWSYYGRECQRCCSYA-GE 120

[Close]

BLAST of Spg006119 vs. NCBI nr
Match: XP_038886927.1 (cold and drought-regulated protein CORA-like isoform X2 [Benincasa hispida])

HSP 1 Score: 66.2 bits (160), Expect = 2.2e-07
Identity = 53/107 (49.53%), Postives = 59/107 (55.14%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVLISAEAVAVAAARDLAPT--PKNNDVDTMKMNGAEDGKYGWRG 60
           MSSKAF FLGLL A V+LIS+E     AARDLA T   K+N+V T++ NG ED KYG  G
Sbjct: 1   MSSKAFVFLGLLLAFVLLISSE----VAARDLAETSSKKDNEV-TVETNGVEDAKYG-GG 60

Query: 61  KSLQYFFPR---------HGNYGVYPDYHGDYSEPGVRIGRCRYGCC 97
               Y   R         HG YG    Y G Y   G R GRC Y CC
Sbjct: 61  YDRGYGGGRGGYGHGGYGHGGYGGRGGYGGGYRR-GCRYGRCGYRCC 100

[Close]

BLAST of Spg006119 vs. ExPASy TrEMBL
Match: A0A6J1C524 (glycine-rich cell wall structural protein-like OS=Momordica charantia OX=3673 GN=LOC111007995 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.5e-09
Identity = 61/148 (41.22%), Postives = 70/148 (47.30%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVLISAEAVAVAAARDLAPT---PKNNDVDTMKMNGAEDGKYGWR 60
           MSSKAFAFLGLLFAIVV+I + AV    A  LAPT     NN+V        ED K+ W 
Sbjct: 1   MSSKAFAFLGLLFAIVVVICSTAV----ANSLAPTSIDEDNNEVTAETNRAVEDAKFSWG 60

Query: 61  GKSLQYF------------FPRHGNYGVYPDYHGDYSEPGVRIGRCRY-------GCCGN 120
           G     F            +PR G YG + DY GDY   G   GR  Y       G CG 
Sbjct: 61  GSFGGGFGRDYPGPGGYGGYPRRGGYGGFGDY-GDYPGRGGYPGRGGYDGFRPGGGLCGQ 120

Query: 121 R----DDRGQCSRCCN-GPFGEVVDAKP 122
                  RG C RCC   P G + +A+P
Sbjct: 121 NGYCCGFRGGCDRCCRYYPGGGLAEARP 143

[Close]

BLAST of Spg006119 vs. ExPASy TrEMBL
Match: A0A2P5BI59 (Glycine rich protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_236760 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.0e-07
Identity = 53/125 (42.40%), Postives = 65/125 (52.00%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVLISAEAVAVAAARDLAPTPKNNDVDTMKMNGAEDGKY-GWRGK 60
           M SKAF +LGLL A+V+LIS+E     AA D+A T  +N      +NG  D KY G+ G 
Sbjct: 1   MGSKAFLYLGLLLAVVLLISSE----VAAGDVAETSTDNKNVDATLNGVNDAKYGGYNGG 60

Query: 61  SLQYFFPRHGNY-GVYPD---YHGDYSEPGVRIGRCRYGCCGNRDDRGQCSRCCNGPFGE 120
              Y    HG   G YP      GDY   G   GRC +GCC       +C RCC+   GE
Sbjct: 61  YPGYGGGDHGGRGGDYPGGGRRGGDYPGGGRGRGRCYHGCCRWSYYGRECQRCCSYA-GE 120

[Close]

BLAST of Spg006119 vs. ExPASy TrEMBL
Match: A0A498J9I5 (Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032418 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.2e-07
Identity = 51/128 (39.84%), Postives = 60/128 (46.88%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVLISAEAVAVAAARDLAPTPKNNDVDTMKMNGAEDGKYGWRGKS 60
           M SK F + GLL AIV+LIS+E  A AA              T  +NGA D KYG   + 
Sbjct: 1   MVSKTFIYFGLLLAIVLLISSEVAANAAE------------TTTNLNGAGDAKYGGGNQG 60

Query: 61  LQYFFPRHGNYGVYPDYHGDYSEP-------GVRIGRCRYGCCGNRDDRGQCSRCCNGPF 120
                P  G YG  P   G    P       G R GRC YGCC    +  +C RCCN   
Sbjct: 61  ----DPGRGGYGGNPSRGGYGGNPGRGGNGGGGRGGRCYYGCCRWSYNGRECLRCCNHA- 111

Query: 121 GEVVDAKP 122
           G+ VDA+P
Sbjct: 121 GQAVDAQP 111

[Close]

BLAST of Spg006119 vs. ExPASy TrEMBL
Match: A0A6J1JPH5 (glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486536 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.2e-07
Identity = 49/97 (50.52%), Postives = 55/97 (56.70%), Query Frame = 0


Query: 1  MSSKAFAFLGLLFAIVVLISAEAVAVAAARDLAPTP-KNNDVDTMKMNGAEDGKYGWRGK 60
          MSSKAF FLGLLFA V+LIS+      AA DLA T  KN +V TM+ NG ED KYG  G 
Sbjct: 1  MSSKAFVFLGLLFAFVLLISSN----VAASDLAHTSVKNENVATMETNGVEDAKYG--GY 60

Query: 61 SLQYFFPRHGNYGVYPDYHGDYSEPGVRIGRCRYGCC 97
             Y   R+ + G     HG Y     R G CRY CC
Sbjct: 61 DRGYRRGRYDHGGHDGHGHGGYR---CRHGWCRYRCC 88

[Close]

BLAST of Spg006119 vs. ExPASy TrEMBL
Match: A0A6J1HZJ5 (glycine-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468344 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 5.2e-07
Identity = 59/133 (44.36%), Postives = 70/133 (52.63%), Query Frame = 0


Query: 1   MSSKAFAFLGLLFAIVVLISAEAVAVAAARDLAPTPKNNDVD-TMKMNGAEDGKYGW--R 60
           MSSKAF FLGLLFA ++LIS+E     AARDLA T  N + + T++ NG ED KYG    
Sbjct: 19  MSSKAFIFLGLLFAFILLISSE----VAARDLAETSANKEKEATVETNGVEDAKYGGYDG 78

Query: 61  GKSLQYFFPRHGNYGVYPDY--HGDYSEPGVRIGR------CRYGCCGNRDDRGQCSRCC 120
           G   +  +   G YG    Y   G Y   G   GR      CRYG CG         RCC
Sbjct: 79  GYGGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGGRGGYGRGCRYGRCG--------YRCC 138

Query: 121 NGPFGEVVD-AKP 122
           +   GEVV+ AKP
Sbjct: 139 SYA-GEVVEGAKP 138

The following BLAST results are available for this feature:

BLAST of Spg006119 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136252.1	5.1e-09	41.22	glycine-rich cell wall structural protein-like [Momordica charantia]	[more]
KAF3456034.1	2.5e-08	43.90	hypothetical protein FNV43_RR00677 [Rhamnella rubrinervis]	[more]
XP_038886926.1	2.2e-07	47.27	cold and drought-regulated protein CORA-like isoform X1 [Benincasa hispida]	[more]
PON48481.1	2.2e-07	42.40	Glycine rich protein [Parasponia andersonii]	[more]
XP_038886927.1	2.2e-07	49.53	cold and drought-regulated protein CORA-like isoform X2 [Benincasa hispida]	[more]

BLAST of Spg006119 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg006119 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C524	2.5e-09	41.22	glycine-rich cell wall structural protein-like OS=Momordica charantia OX=3673 GN...	[more]
A0A2P5BI59	1.0e-07	42.40	Glycine rich protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_236760 PE=4 ...	[more]
A0A498J9I5	5.2e-07	39.84	Uncharacterized protein OS=Malus domestica OX=3750 GN=DVH24_032418 PE=4 SV=1	[more]
A0A6J1JPH5	5.2e-07	50.52	glycine-rich protein DC7.1-like OS=Cucurbita maxima OX=3661 GN=LOC111486536 PE=4...	[more]
A0A6J1HZJ5	5.2e-07	44.36	glycine-rich protein-like OS=Cucurbita maxima OX=3661 GN=LOC111468344 PE=4 SV=1	[more]

BLAST of Spg006119 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010800	Glycine rich protein	PFAM	PF07172	GRP	coord: 1..95 e-value: 2.9E-7 score: 31.1
IPR010800	Glycine rich protein	PANTHER	PTHR37389	FAMILY NOT NAMED	coord: 1..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg006119.1	Spg006119.1	mRNA