Spg005994 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005994
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Pentatricopeptide repeat-containing protein
Location	scaffold11: 1648816 .. 1652341 (-)
RNA-Seq Expression	Spg005994
Synteny	Spg005994

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCTGAATTTCTGATGCCTCTCACGAGTGCGGCGCCCCACTGAGACCGTCCCTCTCTGGTTTAAGAGTGCGATTTCCTCGTCTCTCTGTTATGTTCCGACGCCATCTCTCTCACAAACCCCCATTTTATCTCTCTTACAAACCCCCATTTCAGCTAACATTGTTCTCTCACTCTCACCACGAAAAGCACCAACAAAACCGAATCCGAACCGATCGAATTTTTTGCACAACCCTCTAAAACCCCTCTGCCCCCCTTCTGACCTTCGTGAAGAATCTCCTCTTTCCACTGTGAACTCGAGCGCCAGTAATCCAATGCCGATTCAGGGGTTTTCCAGGTCGAAATTACCAATTCTTGCTTCGGTATTACTTCGAGCTCTAACGAGGAGACCCATTAGAGATATCCCATTTCCAGTGAAGTCGGCGTTTGCTGGATTTCAGCCGGATTCGAGCCGACCCTTATGCGGATTTCGGCTTTATCACGACGGGAGGCCACGAGGACCCCTTTGGAGGAGCCGGAAGGCCATTGGGAAAGAAGCGCTTTTTGTGATTCAGGGATTGAGGAGATTCAAGGAAGATGAAGAGAAGCTTCAGAAGTTTATGAAGAATCACGTTTCGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTATCCGTCAAGGTTTCTTTCCCCTTTCTTTTCTTCACTATGCTCTGTTCTTTTGTGGGGTTTTAACTTTACTTCATGGGATGCCATGGAAATAGATAATGGGCTTCTGTCAGATACACATAATATTGCTGTCTTGCTCTTGCTTGTTGTGACTATAACTTTTCAATTGCTTTGTAAGTTGATGCTTTGAGTTTTTGCTCTTACTGATTTTTAGTTGCTTTGGGTGAATCAATTTGCAAATGCTGGATTTAAGCTTCTATTTTGCTCTTGGATTTTTTAGAATATGTTTCTCAGCTTTTAGCATTCTTGGCTTTTGCACTGCCTCCTTTTATGGAGCTACTGTGCAATTTTTACAAGTTTCAGCTATTCACTTCTTTATGCAGGATAATATCCAAATGGAAGCATGTTTAAGAAAGGTCGTAAACAAAATAAATTCATTTATTGATGTTCCTTTCGATCATATATTGGGTTGTTTTCCCACTTCCTACTAAGTTTTTAGCTTAATTTATGTCGAATGCCACCCAGTACACTCGAGTTTCCTTCTTCCTTGGGAATACTGTCCTGTTGCTCTCCTGTCCATCTCTGATCTTCCCCTTTGAGTGCTTATCAGATCTACTTCAAACTTTTTGTTTGAATTATGATTACGATCTCAAATACGAAACATAGTTCAATCTAATTGCGTGTGGAAATGTTTGCTGTTAGATTCTTTTATCTTCAACTCGGAATGAATCAATTTTACTTCATCATTTCTTGTTATTTGACCCGTTGTAGTTTTCTGTCGTCATAATATTTTCTCTCCCGTACACACTTGTTGAATTTTCAGATATTTAGGTTGATTCAAAAGCAAGACTGGTACAAGCCTGATGTTTTTATGTACAAGGACTTGATTGTCGCATTAGCTAAAAGTAAAAAGATGGATGATGCAATGGAATTATGGGAAAGCATGAGAAAGGAGAATTTGTTCCCCGATTCTCAAACGTATACCGAAGTCATCAGAGGTTTCTTGAGATTTGGATCTCCTTCTGATGCAATGAACATATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTCAGAATTTTGTTGAAAGGACTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAAGAGCTCTTTCCTGACCAGCATGTGTACGATCCCCCCGAAGAGATATTCGGCCTACGTTGAGGTCTGTTTATGCAACTCTTTTCTCCTCTCTTCATCTTTCTTCTCAAGTAATGTTAATTAAGGTTGGTAGTATACTAGTATTTAGTAGACTGTCATAGTAGGTCATTGTATGGTTATAAGTTCAAAATCCTCAAGTTACTTGTGACATTTAATACATTACAAGTTTTTAAATACCAAATGTTATTAACTTTTTCAAAGTAATGGAAAACCGACCGTAACTTGCCTTTGAAAGACGGAAGGAGTAGAATCAGCTGTCAAGAACCCAAAGAAGGTAGGATGAATAGTTGGCCAGATGTAGTATGAGTCATATGTGGATAGGAGTGTGAGCCGATAACTCTCTTAGTCTTAGGGTTCTCTCATCTTAGACCCCTTGGGAAGATCAAATAGGCCCTGCTGTCCTTGTGAACGACTTGATATATCTTCTTTTAGTCCTTTGAGCAAAATGCGACAAAATCCCAAAGGAAAATTCATAGATCAACCCCATCGCCTCCACTTTGTGCAAACAACAAACAAACACCAAGATCACTCCTCGGAAGTCTTCAATATTTAGGGGTCACGAACCAACCATAGAATCCTGTTCAACAAGTGGTTGCATTGGTTGTCCACACTTTTGTTTCCAAAGTGCACTGTTATTGGGGCATTGTTTGGGAGTGATTTTGGCCAAAATCACTTCTAAAAATGCCCTTGGGAAGCCTTTAAAAGCACTTATTTTCTAAGGAAGGGCACTTATTGACCTTCTATTCTGTTTCACTCTCAAACTAAATATATCCATGTAATTTCCAATCATACAAATTCCCATCTCATTACTATGATGTGCCATTTCTTTTATTCTCTCTAGTATTGGAAAAAAGGTATTTTGTGATTGCTTTATCATCTTTTTCTCTATTGTCATCCTCACCAAGGTCTTCTGTAAGATCTTTAGCCCTTTACATCAGATGCTTGTTCTTGTCAATTCACTGCTGTTAACGAGGATGCAAGAATGATGGCAAGTAGAGGGGAGCAAATAAATGCAATTAGGAAACTGAAACATCGACCTTAAGCCCTTTCTCTTGCATGGTTTCATTTTCGAGTACTACATTGGCTCTGAATTCATCATATTCTATTATAGGTCTGTTCTTTCCCTTTTTCGTTGCATCGTCTTAAAAAACACGCATCATTTCAGGGAATTAACACGATGATTTGTCAACGAACACTACTTTGGTTTCTTGATGCTTCCCCACTGCTGAAACCGAAAGCAAAACCAAGGAGATTGTTGATATGAAAGTGCAAGGAGATGGAGACGTTATCAATGGCGTTCCTCAGAGCCGTCGAGTTTGGATTTAAAGGAGAAAGGAAGAAGATGGTGAAAATAGCAAAGCTTGAATCAAATCAAATGCAGGTATTTGTTTCTTTTTAAGAGAGTCTGCAGTTTGTTGAGTGATCATTGTCCTGAAATTGTCCATTAACTGAGGAATGTGAATGCCACAGAGAAATACAAATGTGTAATTGTCCTTCAAACTCACAAAATCTTAATTTTAGTCTTTTTAATGTTTATTAAATTTTATATTTAGTCACCATTGTAAAAGTGTGATATTGTGGATATGACATATTAAGTTACATTATATTTTCAAATAAATTAGACAGCATACTTTTAT

mRNA sequence

ATGCCGATTCAGGGGTTTTCCAGGTCGAAATTACCAATTCTTGCTTCGGTATTACTTCGAGCTCTAACGAGGAGACCCATTAGAGATATCCCATTTCCAGTGAAGTCGGCGTTTGCTGGATTTCAGCCGGATTCGAGCCGACCCTTATGCGGATTTCGGCTTTATCACGACGGGAGGCCACGAGGACCCCTTTGGAGGAGCCGGAAGGCCATTGGGAAAGAAGCGCTTTTTGTGATTCAGGGATTGAGGAGATTCAAGGAAGATGAAGAGAAGCTTCAGAAGTTTATGAAGAATCACGTTTCGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTATCCGTCAAGATATTTAGGTTGATTCAAAAGCAAGACTGGTACAAGCCTGATGTTTTTATGTACAAGGACTTGATTGTCGCATTAGCTAAAAGTAAAAAGATGGATGATGCAATGGAATTATGGGAAAGCATGAGAAAGGAGAATTTGTTCCCCGATTCTCAAACGTATACCGAAGTCATCAGAGGTTTCTTGAGATTTGGATCTCCTTCTGATGCAATGAACATATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTCAGAATTTTGTTGAAAGGACTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAAGAGCTCTTTCCTGACCAGCATGTGTACGATCCCCCCGAAGAGATATTCGGCCTACGTTGA

Coding sequence (CDS)

ATGCCGATTCAGGGGTTTTCCAGGTCGAAATTACCAATTCTTGCTTCGGTATTACTTCGAGCTCTAACGAGGAGACCCATTAGAGATATCCCATTTCCAGTGAAGTCGGCGTTTGCTGGATTTCAGCCGGATTCGAGCCGACCCTTATGCGGATTTCGGCTTTATCACGACGGGAGGCCACGAGGACCCCTTTGGAGGAGCCGGAAGGCCATTGGGAAAGAAGCGCTTTTTGTGATTCAGGGATTGAGGAGATTCAAGGAAGATGAAGAGAAGCTTCAGAAGTTTATGAAGAATCACGTTTCGAGGCTCTTGAAATTGGATATGATTGCTGTGCTTGGTGAACTTGAGCGGCAGGAAGAGGTTGCTTTATCCGTCAAGATATTTAGGTTGATTCAAAAGCAAGACTGGTACAAGCCTGATGTTTTTATGTACAAGGACTTGATTGTCGCATTAGCTAAAAGTAAAAAGATGGATGATGCAATGGAATTATGGGAAAGCATGAGAAAGGAGAATTTGTTCCCCGATTCTCAAACGTATACCGAAGTCATCAGAGGTTTCTTGAGATTTGGATCTCCTTCTGATGCAATGAACATATATGAGGATATGAAGAAGTCTCCAGATCCACCAGATGAGTTGCCATTCAGAATTTTGTTGAAAGGACTTTTGCCACACCCCCTTTTGAGAAACAGAGTAAAGCAAGATTTTGAAGAGCTCTTTCCTGACCAGCATGTGTACGATCCCCCCGAAGAGATATTCGGCCTACGTTGA

Protein sequence

MPIQGFSRSKLPILASVLLRALTRRPIRDIPFPVKSAFAGFQPDSSRPLCGFRLYHDGRPRGPLWRSRKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEEVALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYTEVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEEIFGLR

Homology

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BLAST of Spg005994 vs. NCBI nr
Match: XP_022158131.1 (pentatricopeptide repeat-containing protein At3g46870 [Momordica charantia])

HSP 1 Score: 479.6 bits (1233), Expect = 1.7e-131
Identity = 234/255 (91.76%), Postives = 245/255 (96.08%), Query Frame = 0


Query: 1   MPIQGFSRSKLPILASVLLRALTRRPIRDIPFPVKSAFAGFQPDSSRPLCGFRLYHDGRP 60
           M I+GFSRSKLPI ASV LR LTRRPIRDIP PVKS   GFQPDSSRP+CGFR YHDGRP
Sbjct: 1   MAIRGFSRSKLPIFASVFLRGLTRRPIRDIPLPVKSKITGFQPDSSRPICGFRPYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGL+RFKEDEEKLQKFMK+HVSRLLKLDMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKSHVSRLLKLDMISVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYT 180
           VAL+VKIFRLIQKQDWYKPDVFMYKDLI+ALA SKKMDDAMELWESMRKE+LFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFMYKDLIIALAGSKKMDDAMELWESMRKEDLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLR+GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRN+VKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQ+VYDPPEEIFGLR
Sbjct: 241 DQNVYDPPEEIFGLR 255

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BLAST of Spg005994 vs. NCBI nr
Match: XP_038895593.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895594.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_038895595.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida])

HSP 1 Score: 469.9 bits (1208), Expect = 1.4e-128
Identity = 230/255 (90.20%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MPIQGFSRSKLPILASVLLRALTRRPIRDIPFPVKSAFAGFQPDSSRPLCGFRLYHDGRP 60
           M I+ FSRSKLPI ASV LR LTRRPIRD   PVKS   GFQPDSSRPL GFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFASVFLRGLTRRPIRDSSLPVKSTITGFQPDSSRPLWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGL+RFKEDEEKL+KFMK+HV RLLKLDMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLEKFMKSHVLRLLKLDMISVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYT 180
           VAL+VKIFRLIQKQDWYKPDVF+YKDLI+ALA+SKKMDDAM+LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLR+GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

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BLAST of Spg005994 vs. NCBI nr
Match: XP_022964699.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964700.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964701.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >KAG7019169.1 Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 466.5 bits (1199), Expect = 1.5e-127
Identity = 228/255 (89.41%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MPIQGFSRSKLPILASVLLRALTRRPIRDIPFPVKSAFAGFQPDSSRPLCGFRLYHDGRP 60
           M ++ FS+ KLPI  SV LR L RRPIRDIP PVKS  AGFQPDSSRPL GFRLYHDGRP
Sbjct: 1   MAMRWFSKLKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGL+RFKEDEEKLQKFMK HV RLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYT 180
           VAL+VK+FRLIQKQ+WYKPDVF+YKDLIVALA+SK+MDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL++GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Spg005994 vs. NCBI nr
Match: XP_022970562.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022970563.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_022970564.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima])

HSP 1 Score: 465.3 bits (1196), Expect = 3.4e-127
Identity = 229/255 (89.80%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MPIQGFSRSKLPILASVLLRALTRRPIRDIPFPVKSAFAGFQPDSSRPLCGFRLYHDGRP 60
           M ++ FS+SKLPI  SV LR LTRRPIRDIP PVKS  AGF PDSSR L GFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGL+RFKEDEEKLQKFMK HV RLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYT 180
           VAL+VK+FRLIQKQ+W+KPDVF+YKDLIVALA+SKKMDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL++GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Spg005994 vs. NCBI nr
Match: XP_023519300.1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo] >XP_023519301.1 protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 464.2 bits (1193), Expect = 7.5e-127
Identity = 227/255 (89.02%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MPIQGFSRSKLPILASVLLRALTRRPIRDIPFPVKSAFAGFQPDSSRPLCGFRLYHDGRP 60
           M ++ FS+SKLPI  SV LR LT RPIRDI  PVKS  AGFQPDSS+PL GFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTTRPIRDISLPVKSTVAGFQPDSSQPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGL+RFKEDEEKLQKFMK HV RLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYT 180
           VAL+VK+FRLIQKQ+WYKPDVF+YKDLIVALA+SK+MDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL++GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Spg005994 vs. ExPASy Swiss-Prot
Match: Q9STF9 (Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=THA8L PE=1 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.4e-96
Identity = 172/246 (69.92%), Postives = 201/246 (81.71%), Query Frame = 0


Query: 10  KLPILASVLLRALTRRP-IRDIPFPVKSAFAGFQPDSSRPLCGF-RLYHDGRPRGPLWRS 69
           K P  AS+  + +TR P I  I F          P   +P   F   +HDGRPRGPLWR 
Sbjct: 10  KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGRPRGPLWRG 69

Query: 70  RKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEEVALSVKI 129
           +K IGKEALFVI GL+R KED+EKL KF+K HV RLLKLDM+AV+GELERQEE AL++K+
Sbjct: 70  KKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALAIKM 129

Query: 130 FRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYTEVIRGFL 189
           F +IQKQ+WY+PDVFMYKDLIV+LAKSK+MD+AM LWE M+KENLFPDSQTYTEVIRGFL
Sbjct: 130 FEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFL 189

Query: 190 RFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDP 249
           R G P+DAMN+YEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELFP++H YDP
Sbjct: 190 RDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAYDP 249

Query: 250 PEEIFG 254
           PEEIFG
Sbjct: 250 PEEIFG 255

[Close]

BLAST of Spg005994 vs. ExPASy Swiss-Prot
Match: Q1PFH7 (Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX=3702 GN=At1g62350 PE=2 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 8.8e-46
Identity = 81/181 (44.75%), Postives = 132/181 (72.93%), Query Frame = 0


Query: 71  IGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEEVALSVKIFRL 130
           + KE L   + L+R +    +L +F+ +HVSRLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYTEVIRGFLRFG 190
           ++++ WY+PD+F Y+D+++ LA++KK+D+  ++WE ++KE +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEE 250
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

[Close]

BLAST of Spg005994 vs. ExPASy Swiss-Prot
Match: Q9FMQ1 (Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g12100 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 3.0e-09
Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 120 EVALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTY 179
           +V   +++F  + K D   P VF+Y  LI  L K K+M+DA +L++ M    L P   TY
Sbjct: 194 DVGKGLELFNRM-KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 253

Query: 180 TEVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGL 222
             +I G+ + G+P  +  + E MK     P  + F  LLKGL
Sbjct: 254 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGL 294

[Close]

BLAST of Spg005994 vs. ExPASy Swiss-Prot
Match: Q9FKC3 (Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g48730 PE=2 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 5.0e-09
Identity = 46/158 (29.11%), Postives = 77/158 (48.73%), Query Frame = 0


Query: 66  RSRKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEEVALSV 125
           ++ K   ++A+ +I      K   EK     K    +LL   ++  L E         ++
Sbjct: 80  KNTKIASRKAISIILRREATKSIIEK-----KKGSKKLLPRTVLESLHERITALRWESAI 139

Query: 126 KIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYTEVIRG 185
           ++F L+++Q WYKP+V +Y  LIV L K K+ + A EL++ M  E    + + YT ++  
Sbjct: 140 QVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSA 199

Query: 186 FLRFGSPSDAMNIYEDMKKSPD-PPDELPFRILLKGLL 223
           + R G    A  + E MK S +  PD   + IL+K  L
Sbjct: 200 YSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

[Close]

BLAST of Spg005994 vs. ExPASy Swiss-Prot
Match: Q76C99 (Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.5e-08
Identity = 27/80 (33.75%), Postives = 44/80 (55.00%), Query Frame = 0


Query: 139 PDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYTEVIRGFLRFGSPSDAMNI 198
           PDV  Y  +I AL K++ MD AME+  +M K  + PD  TY  ++ G+   G P +A+  
Sbjct: 229 PDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGF 288

Query: 199 YEDMKKSPDPPDELPFRILL 219
            + M+     PD + + +L+
Sbjct: 289 LKKMRSDGVEPDVVTYSLLM 308

[Close]

BLAST of Spg005994 vs. ExPASy TrEMBL
Match: A0A6J1E045 (pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=3673 GN=LOC111024687 PE=4 SV=1)

HSP 1 Score: 479.6 bits (1233), Expect = 8.3e-132
Identity = 234/255 (91.76%), Postives = 245/255 (96.08%), Query Frame = 0


Query: 1   MPIQGFSRSKLPILASVLLRALTRRPIRDIPFPVKSAFAGFQPDSSRPLCGFRLYHDGRP 60
           M I+GFSRSKLPI ASV LR LTRRPIRDIP PVKS   GFQPDSSRP+CGFR YHDGRP
Sbjct: 1   MAIRGFSRSKLPIFASVFLRGLTRRPIRDIPLPVKSKITGFQPDSSRPICGFRPYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGL+RFKEDEEKLQKFMK+HVSRLLKLDMI+VLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKSHVSRLLKLDMISVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYT 180
           VAL+VKIFRLIQKQDWYKPDVFMYKDLI+ALA SKKMDDAMELWESMRKE+LFPDSQTYT
Sbjct: 121 VALAVKIFRLIQKQDWYKPDVFMYKDLIIALAGSKKMDDAMELWESMRKEDLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLR+GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRN+VKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNKVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQ+VYDPPEEIFGLR
Sbjct: 241 DQNVYDPPEEIFGLR 255

[Close]

BLAST of Spg005994 vs. ExPASy TrEMBL
Match: A0A6J1HLK1 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111464704 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 7.3e-128
Identity = 228/255 (89.41%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MPIQGFSRSKLPILASVLLRALTRRPIRDIPFPVKSAFAGFQPDSSRPLCGFRLYHDGRP 60
           M ++ FS+ KLPI  SV LR L RRPIRDIP PVKS  AGFQPDSSRPL GFRLYHDGRP
Sbjct: 1   MAMRWFSKLKLPICYSVFLRGLMRRPIRDIPLPVKSTVAGFQPDSSRPLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGL+RFKEDEEKLQKFMK HV RLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYT 180
           VAL+VK+FRLIQKQ+WYKPDVF+YKDLIVALA+SK+MDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWYKPDVFLYKDLIVALARSKQMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL++GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEE+FP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEEIFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Spg005994 vs. ExPASy TrEMBL
Match: A0A6J1I496 (protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111469502 PE=4 SV=1)

HSP 1 Score: 465.3 bits (1196), Expect = 1.6e-127
Identity = 229/255 (89.80%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MPIQGFSRSKLPILASVLLRALTRRPIRDIPFPVKSAFAGFQPDSSRPLCGFRLYHDGRP 60
           M ++ FS+SKLPI  SV LR LTRRPIRDIP PVKS  AGF PDSSR L GFRLYHDGRP
Sbjct: 1   MAMRWFSKSKLPICYSVFLRGLTRRPIRDIPLPVKSTIAGFLPDSSRLLSGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGL+RFKEDEEKLQKFMK HV RLLKLDMIAVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLQKFMKCHVLRLLKLDMIAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYT 180
           VAL+VK+FRLIQKQ+W+KPDVF+YKDLIVALA+SKKMDDAMELWESMRKENLFPDSQTYT
Sbjct: 121 VALAVKVFRLIQKQEWFKPDVFIYKDLIVALARSKKMDDAMELWESMRKENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFL++GSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLKYGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHVYDPPEEIFGLR
Sbjct: 241 DQHVYDPPEEIFGLR 255

[Close]

BLAST of Spg005994 vs. ExPASy TrEMBL
Match: A0A5A7SRJ7 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00030 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.4e-126
Identity = 223/255 (87.45%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MPIQGFSRSKLPILASVLLRALTRRPIRDIPFPVKSAFAGFQPDSSRPLCGFRLYHDGRP 60
           M I+ FSRSKLPI A V LR LTRRPIRD+P PV S   GFQPDSSRP+ GFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPIFALVFLRGLTRRPIRDVPLPVTSTITGFQPDSSRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGL+RFKEDEEKL KFMK+HVSRLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKLGKFMKSHVSRLLKLDMLAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYT 180
           VAL+VKIFRLI+KQDWYKPDV++YKDLI+ALA+SKKMDDAM+LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLR+GSPSDAMN+YEDMKKSP+PPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPEPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of Spg005994 vs. ExPASy TrEMBL
Match: A0A0A0LVE9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1)

HSP 1 Score: 462.2 bits (1188), Expect = 1.4e-126
Identity = 221/255 (86.67%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MPIQGFSRSKLPILASVLLRALTRRPIRDIPFPVKSAFAGFQPDSSRPLCGFRLYHDGRP 60
           M I+ FSRSKLP+ ASV L+ LTRRPIRD+P PVKS    FQPDS RP+ GFRLYHDGRP
Sbjct: 1   MAIRWFSRSKLPVFASVFLQGLTRRPIRDVPLPVKSTITDFQPDSRRPIWGFRLYHDGRP 60

Query: 61  RGPLWRSRKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEE 120
           RGPLWRSRKAIGKEALFVIQGL+RFKEDEEK +KFMK+HVSRLLKLDM+AVLGELERQEE
Sbjct: 61  RGPLWRSRKAIGKEALFVIQGLKRFKEDEEKFEKFMKSHVSRLLKLDMVAVLGELERQEE 120

Query: 121 VALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYT 180
           VAL+VKIFRLI+KQDWYKPDV++YKDLI+ALA+SKKMDDAM+LWESMR+ENLFPDSQTYT
Sbjct: 121 VALAVKIFRLIRKQDWYKPDVYIYKDLIIALARSKKMDDAMKLWESMREENLFPDSQTYT 180

Query: 181 EVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240
           EVIRGFLR+GSPSDAMN+YEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP
Sbjct: 181 EVIRGFLRYGSPSDAMNVYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFP 240

Query: 241 DQHVYDPPEEIFGLR 256
           DQHV+DPPEEIF LR
Sbjct: 241 DQHVFDPPEEIFSLR 255

[Close]

BLAST of Spg005994 vs. TAIR 10
Match: AT3G46870.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 353.2 bits (905), Expect = 1.7e-97
Identity = 172/246 (69.92%), Postives = 201/246 (81.71%), Query Frame = 0


Query: 10  KLPILASVLLRALTRRP-IRDIPFPVKSAFAGFQPDSSRPLCGF-RLYHDGRPRGPLWRS 69
           K P  AS+  + +TR P I  I F          P   +P   F   +HDGRPRGPLWR 
Sbjct: 10  KFPTFASIFFQNITRNPSIHRISFSNLKPKTLLHPIPPKPFTVFVSRFHDGRPRGPLWRG 69

Query: 70  RKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEEVALSVKI 129
           +K IGKEALFVI GL+R KED+EKL KF+K HV RLLKLDM+AV+GELERQEE AL++K+
Sbjct: 70  KKLIGKEALFVILGLKRLKEDDEKLDKFIKTHVFRLLKLDMLAVIGELERQEETALAIKM 129

Query: 130 FRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYTEVIRGFL 189
           F +IQKQ+WY+PDVFMYKDLIV+LAKSK+MD+AM LWE M+KENLFPDSQTYTEVIRGFL
Sbjct: 130 FEVIQKQEWYQPDVFMYKDLIVSLAKSKRMDEAMALWEKMKKENLFPDSQTYTEVIRGFL 189

Query: 190 RFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDP 249
           R G P+DAMN+YEDM KSPDPP+ELPFR+LLKGLLPHPLLRN+VK+DFEELFP++H YDP
Sbjct: 190 RDGCPADAMNVYEDMLKSPDPPEELPFRVLLKGLLPHPLLRNKVKKDFEELFPEKHAYDP 249

Query: 250 PEEIFG 254
           PEEIFG
Sbjct: 250 PEEIFG 255

[Close]

BLAST of Spg005994 vs. TAIR 10
Match: AT1G62350.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 185.3 bits (469), Expect = 6.3e-47
Identity = 81/181 (44.75%), Postives = 132/181 (72.93%), Query Frame = 0


Query: 71  IGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEEVALSVKIFRL 130
           + KE L   + L+R +    +L +F+ +HVSRLLK D+++VL E +RQ +V L +K++ +
Sbjct: 1   MSKEGLIAAKELKRLQTQSVRLDRFIGSHVSRLLKSDLVSVLAEFQRQNQVFLCMKLYEV 60

Query: 131 IQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYTEVIRGFLRFG 190
           ++++ WY+PD+F Y+D+++ LA++KK+D+  ++WE ++KE +  D  T+ +++RGFL   
Sbjct: 61  VRREIWYRPDMFFYRDMLMMLARNKKVDETKKVWEDLKKEEVLFDQHTFGDLVRGFLDNE 120

Query: 191 SPSDAMNIYEDMKKSPDPPDELPFRILLKGLLPHPLLRNRVKQDFEELFPDQHVYDPPEE 250
            P +AM +Y +M++SPD P  LPFR++LKGL+P+P LR +VK DF ELFP   VYDPPE+
Sbjct: 121 LPLEAMRLYGEMRESPDRPLSLPFRVILKGLVPYPELREKVKDDFLELFPGMIVYDPPED 180

Query: 251 I 252
           I
Sbjct: 181 I 181

[Close]

BLAST of Spg005994 vs. TAIR 10
Match: AT5G09320.1 (Vacuolar sorting protein 9 (VPS9) domain )

HSP 1 Score: 80.1 bits (196), Expect = 2.8e-15
Identity = 56/177 (31.64%), Postives = 87/177 (49.15%), Query Frame = 0


Query: 61  RGPLWRSRKAIGKEALFVIQGLRR---------------FKEDEEKLQKFMKNHVSRLLK 120
           R PL R R  +  EA+  +Q L+R                      L + + +   RLLK
Sbjct: 496 RKPLQRGR-MLSIEAIQAVQALKRANPLLPPPPVPSTSTTSSSSALLDRVIISKFRRLLK 555

Query: 121 LDMIAVLGELERQEEVALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWE 180
            DM+AVL EL RQ E +L++K+F  I+K+ WYKP V MY D+I  +A +  M++   L+ 
Sbjct: 556 FDMVAVLRELLRQNECSLALKVFEEIRKEYWYKPQVRMYTDMITVMADNSLMEEVNYLYS 615

Query: 181 SMRKE-NLFPDSQTYTEVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGL 222
           +M+ E  L  + + +  ++   L        M+ Y  M+     PD   FR+L+ GL
Sbjct: 616 AMKSEKGLMAEIEWFNTLLTILLNHKLFDLVMDCYAFMQSIGYEPDRASFRVLVLGL 671

[Close]

BLAST of Spg005994 vs. TAIR 10
Match: AT5G12100.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 63.9 bits (154), Expect = 2.1e-10
Identity = 36/102 (35.29%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 120 EVALSVKIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTY 179
           +V   +++F  + K D   P VF+Y  LI  L K K+M+DA +L++ M    L P   TY
Sbjct: 194 DVGKGLELFNRM-KHDRIYPSVFIYNVLIDGLCKGKRMNDAEQLFDEMLARRLLPSLITY 253

Query: 180 TEVIRGFLRFGSPSDAMNIYEDMKKSPDPPDELPFRILLKGL 222
             +I G+ + G+P  +  + E MK     P  + F  LLKGL
Sbjct: 254 NTLIDGYCKAGNPEKSFKVRERMKADHIEPSLITFNTLLKGL 294

[Close]

BLAST of Spg005994 vs. TAIR 10
Match: AT5G48730.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 3.6e-10
Identity = 46/158 (29.11%), Postives = 77/158 (48.73%), Query Frame = 0


Query: 66  RSRKAIGKEALFVIQGLRRFKEDEEKLQKFMKNHVSRLLKLDMIAVLGELERQEEVALSV 125
           ++ K   ++A+ +I      K   EK     K    +LL   ++  L E         ++
Sbjct: 80  KNTKIASRKAISIILRREATKSIIEK-----KKGSKKLLPRTVLESLHERITALRWESAI 139

Query: 126 KIFRLIQKQDWYKPDVFMYKDLIVALAKSKKMDDAMELWESMRKENLFPDSQTYTEVIRG 185
           ++F L+++Q WYKP+V +Y  LIV L K K+ + A EL++ M  E    + + YT ++  
Sbjct: 140 QVFELLREQLWYKPNVGIYVKLIVMLGKCKQPEKAHELFQEMINEGCVVNHEVYTALVSA 199

Query: 186 FLRFGSPSDAMNIYEDMKKSPD-PPDELPFRILLKGLL 223
           + R G    A  + E MK S +  PD   + IL+K  L
Sbjct: 200 YSRSGRFDAAFTLLERMKSSHNCQPDVHTYSILIKSFL 232

The following BLAST results are available for this feature:

BLAST of Spg005994 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158131.1	1.7e-131	91.76	pentatricopeptide repeat-containing protein At3g46870 [Momordica charantia]	[more]
XP_038895593.1	1.4e-128	90.20	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Benincasa hispida] >XP_0388955...	[more]
XP_022964699.1	1.5e-127	89.41	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita moschata] >XP_022964...	[more]
XP_022970562.1	3.4e-127	89.80	protein THYLAKOID ASSEMBLY 8-like, chloroplastic [Cucurbita maxima] >XP_02297056...	[more]
XP_023519300.1	7.5e-127	89.02	protein THYLAKOID ASSEMBLY 8-like, chloroplastic isoform X1 [Cucurbita pepo subs...	[more]

BLAST of Spg005994 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9STF9	2.4e-96	69.92	Protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Arabidopsis thaliana OX=3702...	[more]
Q1PFH7	8.8e-46	44.75	Pentatricopeptide repeat-containing protein At1g62350 OS=Arabidopsis thaliana OX...	[more]
Q9FMQ1	3.0e-09	35.29	Pentatricopeptide repeat-containing protein At5g12100, mitochondrial OS=Arabidop...	[more]
Q9FKC3	5.0e-09	29.11	Pentatricopeptide repeat-containing protein At5g48730, chloroplastic OS=Arabidop...	[more]
Q76C99	1.5e-08	33.75	Protein Rf1, mitochondrial OS=Oryza sativa subsp. indica OX=39946 GN=Rf1 PE=2 SV...	[more]

BLAST of Spg005994 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E045	8.3e-132	91.76	pentatricopeptide repeat-containing protein At3g46870 OS=Momordica charantia OX=...	[more]
A0A6J1HLK1	7.3e-128	89.41	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita moschata OX=3662 G...	[more]
A0A6J1I496	1.6e-127	89.80	protein THYLAKOID ASSEMBLY 8-like, chloroplastic OS=Cucurbita maxima OX=3661 GN=...	[more]
A0A5A7SRJ7	1.4e-126	87.45	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0LVE9	1.4e-126	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G525290 PE=4 SV=1	[more]

BLAST of Spg005994 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46870.1	1.7e-97	69.92	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62350.1	6.3e-47	44.75	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G09320.1	2.8e-15	31.64	Vacuolar sorting protein 9 (VPS9) domain	[more]
AT5G12100.1	2.1e-10	35.29	pentatricopeptide (PPR) repeat-containing protein	[more]
AT5G48730.1	3.6e-10	29.11	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 143..175 e-value: 4.2E-6 score: 24.6 coord: 178..205 e-value: 7.6E-4 score: 17.5
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 139..187 e-value: 1.4E-10 score: 41.2
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 140..174 score: 11.290196
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 175..209 score: 10.55579
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 69..255 e-value: 3.2E-55 score: 188.3
None	No IPR available	PANTHER	PTHR46870:SF2	PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC	coord: 5..254
IPR044795	Pentatricopeptide repeat-containing protein THA8L-like	PANTHER	PTHR46870	PROTEIN THYLAKOID ASSEMBLY 8-LIKE, CHLOROPLASTIC	coord: 5..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005994.1	Spg005994.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005515	protein binding