Spg005990 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005990
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	RAN binding protein 1
Location	scaffold11: 817325 .. 818270 (-)
RNA-Seq Expression	Spg005990
Synteny	Spg005990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCATTTCTTCACTCCCATATATAAACCCTACTTTCTCCGCCTGCCTTCTCCCAATTCCGATCCATTTCTTCATCTTCTCATCCAAACCCTAAACCCTCTTCCATGGCCAGCACCGATACCGAACGCCGAGACGACGAGGAGGCTCCCGCCGGAGAGGATGAAGACACTGGAGCTCAAGTCGCCCCAATCGTCAAGTTGGAGGAGGTCGCCGTCACCACCGGCGAAGAAAACGAAGACGCTATTCTCGATCTGTATGCCTTTTCTCTTTCTTCCCCTCTTCGTCCGATCTGCTCAATCTTGCTTTTCTCTTTCATGGGTTATTCATACTTTTTGCTTCAGGAAATCCAAACTCTACCGATTCGATAAAGATGGAAACCAGTGGAAGGAGAGGGGTGCTGGTACGGTTAAGTTTTTGAAGCATAAGGAGACTGGCAAGGTTCGTCTTGTCATGAGACAGTCTAAAACCCTCAAGATCTGCGCTAACCATCTCGGTTTGTTTTCAATTCTCTACCAAGCTCCTTTGGGTTTAGGTTTTCTTTGTTTCGTTCTTCGATTTTATCGTTTGATTTGTCGTGGTTGTAGTTCTTCCATCAATGTCGGTTCAAGAACACGCTGGAAATGACAAGTCGTGTGTGTGGCATGCGACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTCTGTATCAGATTCCCATCTATTGAGAGTGAGTACAACTCCGTATTTTTTTTTTTTATTTTCTAAAATTGGGCTGAAGGTTGACTGATAGATTCTTCTAGGCTTTTGATATCTTGATATTTGGTAGTGGGCTACGATTAAAGATGATTCTTATATCGTTTCACGTACTGTGTCTTCTTCTCCCCTCCCGAAGAAATTCTCTGTTAGAGCTCTCTCTCTAGCAGTGTTCGATATGAAGTACTTCTGGGATAATTCTTTCCACTGA

mRNA sequence

ATGGCCAGCACCGATACCGAACGCCGAGACGACGAGGAGGCTCCCGCCGGAGAGGATGAAGACACTGGAGCTCAAGTCGCCCCAATCGTCAAGTTGGAGGAGGTCGCCGTCACCACCGGCGAAGAAAACGAAGACGCTATTCTCGATCTGAAATCCAAACTCTACCGATTCGATAAAGATGGAAACCAGTGGAAGGAGAGGGGTGCTGGTACGGTTAAGTTTTTGAAGCATAAGGAGACTGGCAAGGTTCGTCTTGTCATGAGACAGTCTAAAACCCTCAAGATCTGCGCTAACCATCTCGTTCTTCCATCAATGTCGGTTCAAGAACACGCTGGAAATGACAAGTCGTGTGTGTGGCATGCGACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTCTGTATCAGATTCCCATCTATTGAGAGTGAGTACAACTCCTGGGCTACGATTAAAGATGATTCTTATATCGTTTCACGTACTGTGTCTTCTTCTCCCCTCCCGAAGAAATTCTCTGTTAGAGCTCTCTCTCTAGCAGTGTTCGATATGAAGTACTTCTGGGATAATTCTTTCCACTGA

Coding sequence (CDS)

ATGGCCAGCACCGATACCGAACGCCGAGACGACGAGGAGGCTCCCGCCGGAGAGGATGAAGACACTGGAGCTCAAGTCGCCCCAATCGTCAAGTTGGAGGAGGTCGCCGTCACCACCGGCGAAGAAAACGAAGACGCTATTCTCGATCTGAAATCCAAACTCTACCGATTCGATAAAGATGGAAACCAGTGGAAGGAGAGGGGTGCTGGTACGGTTAAGTTTTTGAAGCATAAGGAGACTGGCAAGGTTCGTCTTGTCATGAGACAGTCTAAAACCCTCAAGATCTGCGCTAACCATCTCGTTCTTCCATCAATGTCGGTTCAAGAACACGCTGGAAATGACAAGTCGTGTGTGTGGCATGCGACTGACTTTGCTGATGGTGAATTGAAAGATGAGCTTTTCTGTATCAGATTCCCATCTATTGAGAGTGAGTACAACTCCTGGGCTACGATTAAAGATGATTCTTATATCGTTTCACGTACTGTGTCTTCTTCTCCCCTCCCGAAGAAATTCTCTGTTAGAGCTCTCTCTCTAGCAGTGTTCGATATGAAGTACTTCTGGGATAATTCTTTCCACTGA

Protein sequence

MASTDTERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWHATDFADGELKDELFCIRFPSIESEYNSWATIKDDSYIVSRTVSSSPLPKKFSVRALSLAVFDMKYFWDNSFH

Homology

[Close]

BLAST of Spg005990 vs. NCBI nr
Match: XP_023519267.1 (ran-binding protein 1 homolog a-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 277.3 bits (708), Expect = 9.8e-71
Identity = 137/143 (95.80%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MASTDTERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS DTERR++EEAPA EDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD
Sbjct: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIES 144
           ATDFADGELKDELFCIRFPSIE+
Sbjct: 121 ATDFADGELKDELFCIRFPSIEN 143

[Close]

BLAST of Spg005990 vs. NCBI nr
Match: KAG6583353.1 (Ran-binding protein 1-like c, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019122.1 Ran-binding protein 1-like c [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 277.3 bits (708), Expect = 9.8e-71
Identity = 137/143 (95.80%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MASTDTERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS DTERR++EEAPA EDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD
Sbjct: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIES 144
           ATDFADGELKDELFCIRFPSIE+
Sbjct: 121 ATDFADGELKDELFCIRFPSIEN 143

[Close]

BLAST of Spg005990 vs. NCBI nr
Match: XP_022970593.1 (ran-binding protein 1 homolog a-like [Cucurbita maxima])

HSP 1 Score: 277.3 bits (708), Expect = 9.8e-71
Identity = 137/143 (95.80%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MASTDTERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS DTERR++EEAPA EDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD
Sbjct: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIES 144
           ATDFADGELKDELFCIRFPSIE+
Sbjct: 121 ATDFADGELKDELFCIRFPSIEN 143

[Close]

BLAST of Spg005990 vs. NCBI nr
Match: XP_038894876.1 (ran-binding protein 1 homolog a [Benincasa hispida])

HSP 1 Score: 277.3 bits (708), Expect = 9.8e-71
Identity = 136/143 (95.10%), Postives = 141/143 (98.60%), Query Frame = 0


Query: 1   MASTDTERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MASTDTERR++EEAPAGEDEDTGAQVAPIVKLEEV VTTGEENEDAILDLKSKLYRFDKD
Sbjct: 1   MASTDTERREEEEAPAGEDEDTGAQVAPIVKLEEVTVTTGEENEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSM+VQEH GN+KSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHVGNEKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIES 144
           ATDFADGELKDELFCIRFPSIE+
Sbjct: 121 ATDFADGELKDELFCIRFPSIEN 143

[Close]

BLAST of Spg005990 vs. NCBI nr
Match: XP_022150935.1 (ran-binding protein 1 homolog a-like [Momordica charantia])

HSP 1 Score: 276.9 bits (707), Expect = 1.3e-70
Identity = 135/143 (94.41%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MASTDTERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MASTD ERRDD+EAPAG+DEDTGAQVAPIVKLEEVAVTTGEE+EDA+LDLK+KLYRFDKD
Sbjct: 1   MASTDPERRDDDEAPAGDDEDTGAQVAPIVKLEEVAVTTGEEDEDAVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSM+VQEHAGNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIES 144
           ATDFADGELKDELFCIRFPSIE+
Sbjct: 121 ATDFADGELKDELFCIRFPSIEN 143

[Close]

BLAST of Spg005990 vs. ExPASy Swiss-Prot
Match: Q9LMK7 (Ran-binding protein 1 homolog a OS=Arabidopsis thaliana OX=3702 GN=RANBP1A PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.0e-62
Identity = 118/137 (86.13%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 7   ERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKE 66
           E RD+EEA A EDEDTGAQVAPIV+LEEVAVTTGEE+EDA+LDLKSKLYRFDKD NQWKE
Sbjct: 9   EHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKE 68

Query: 67  RGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWHATDFAD 126
           RGAGTVKFLKHK TGK+RLVMRQSKTLKICANH V   MSVQEH GN+KSCVWHA DFAD
Sbjct: 69  RGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFAD 128

Query: 127 GELKDELFCIRFPSIES 144
           GELKDELFCIRF SIE+
Sbjct: 129 GELKDELFCIRFASIEN 145

[Close]

BLAST of Spg005990 vs. ExPASy Swiss-Prot
Match: P92985 (Ran-binding protein 1 homolog c OS=Arabidopsis thaliana OX=3702 GN=RANBP1C PE=2 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 3.9e-62
Identity = 117/144 (81.25%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 1   MASTDTERRD-DEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDK 60
           MAST+ ER + ++E    EDEDTGAQVAPIV+LEEVAVTTGEE+EDA+LDLKSK+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVW 120
           +GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHL+   MSVQEH+GN+KSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 121 HATDFADGELKDELFCIRFPSIES 144
           HATDF+DGELKDELFCIRF SIE+
Sbjct: 121 HATDFSDGELKDELFCIRFASIEN 144

[Close]

BLAST of Spg005990 vs. ExPASy Swiss-Prot
Match: Q8RWG8 (Ran-binding protein 1 homolog b OS=Arabidopsis thaliana OX=3702 GN=RANBP1B PE=1 SV=2)

HSP 1 Score: 237.3 bits (604), Expect = 1.5e-61
Identity = 116/139 (83.45%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 5   DTERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQW 64
           + E RD+EE  A EDEDTGAQVAPIV+LEEVAVTTGEE+ED ILDLKSKLYRFDKDG+QW
Sbjct: 9   ERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQW 68

Query: 65  KERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWHATDF 124
           KERGAGTVKFLKH+ +GK+RLVMRQSKTLKICANHLV   MSVQEHAGNDKSCVWHA DF
Sbjct: 69  KERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDF 128

Query: 125 ADGELKDELFCIRFPSIES 144
           +DGELKDELFCIRF S+E+
Sbjct: 129 SDGELKDELFCIRFASVEN 147

[Close]

BLAST of Spg005990 vs. ExPASy Swiss-Prot
Match: Q09717 (Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=sbp1 PE=1 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.3e-29
Identity = 68/140 (48.57%), Postives = 89/140 (63.57%), Query Frame = 0


Query: 10  DDEEAPAGEDEDT-----GAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQW 69
           +DE+ PA  DED           PIVKL  V   T EE E     +++KL+RFDK  ++W
Sbjct: 54  NDEKKPAEGDEDAEPASPEVHFEPIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAASEW 113

Query: 70  KERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH-ATD 129
           KERG G  + LKHKETGK RLVMR+ KTLK+CANHL++P M +  + G+D+S VW  A D
Sbjct: 114 KERGTGDARLLKHKETGKTRLVMRRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVAAD 173

Query: 130 FADGELKDELFCIRFPSIES 144
            ++GE   E F IRF + E+
Sbjct: 174 VSEGEPTAETFAIRFANSEN 193

[Close]

BLAST of Spg005990 vs. ExPASy Swiss-Prot
Match: Q9ERU9 (E3 SUMO-protein ligase RanBP2 OS=Mus musculus OX=10090 GN=Ranbp2 PE=1 SV=2)

HSP 1 Score: 129.0 bits (323), Expect = 5.6e-29
Identity = 61/127 (48.03%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 17   GEDEDTGAQVAPIVKL-EEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKFL 76
            G++ED G    P+V L +++ V TGEE+E+     ++KL+RFD +  +WKERG G VK L
Sbjct: 1157 GDEEDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDGESKEWKERGIGNVKIL 1216

Query: 77   KHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWHATDFADGELKDELFC 136
            +HK +GK+RL+MR+ + LKICANH + P M +  +AG+D+S VWHA D+AD   K E   
Sbjct: 1217 RHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLA 1276

Query: 137  IRFPSIE 143
            IRF + E
Sbjct: 1277 IRFKTPE 1283

[Close]

BLAST of Spg005990 vs. ExPASy TrEMBL
Match: A0A6J1I4C6 (ran-binding protein 1 homolog a-like OS=Cucurbita maxima OX=3661 GN=LOC111469534 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.7e-71
Identity = 137/143 (95.80%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MASTDTERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS DTERR++EEAPA EDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD
Sbjct: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIES 144
           ATDFADGELKDELFCIRFPSIE+
Sbjct: 121 ATDFADGELKDELFCIRFPSIEN 143

[Close]

BLAST of Spg005990 vs. ExPASy TrEMBL
Match: A0A6J1D9U8 (ran-binding protein 1 homolog a-like OS=Momordica charantia OX=3673 GN=LOC111018967 PE=4 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 6.2e-71
Identity = 135/143 (94.41%), Postives = 142/143 (99.30%), Query Frame = 0


Query: 1   MASTDTERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MASTD ERRDD+EAPAG+DEDTGAQVAPIVKLEEVAVTTGEE+EDA+LDLK+KLYRFDKD
Sbjct: 1   MASTDPERRDDDEAPAGDDEDTGAQVAPIVKLEEVAVTTGEEDEDAVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSM+VQEHAGNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIES 144
           ATDFADGELKDELFCIRFPSIE+
Sbjct: 121 ATDFADGELKDELFCIRFPSIEN 143

[Close]

BLAST of Spg005990 vs. ExPASy TrEMBL
Match: A0A6J1HKC3 (ran-binding protein 1 homolog a-like OS=Cucurbita moschata OX=3662 GN=LOC111464892 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 1.1e-70
Identity = 136/143 (95.10%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MASTDTERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS DTERR++EEAPA EDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD
Sbjct: 1   MASADTERREEEEAPAAEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKH+ETGKVRLVMRQSKTLKICANHLVLPSMSVQEH GNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHRETGKVRLVMRQSKTLKICANHLVLPSMSVQEHVGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIES 144
           ATDFADGELKDELFCIRFPSIE+
Sbjct: 121 ATDFADGELKDELFCIRFPSIEN 143

[Close]

BLAST of Spg005990 vs. ExPASy TrEMBL
Match: A0A6J1I618 (ran-binding protein 1 homolog a-like OS=Cucurbita maxima OX=3661 GN=LOC111469535 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.4e-70
Identity = 135/143 (94.41%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MASTDTERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS D+ERRD EEAPAGEDEDTGAQVAPIVKLEEV VTTGEENEDA+LDLK+KLYRFDKD
Sbjct: 1   MASADSERRDTEEAPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSM+VQEHAGNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIES 144
           ATDFADGELKDELFCIRFPSIE+
Sbjct: 121 ATDFADGELKDELFCIRFPSIEN 143

[Close]

BLAST of Spg005990 vs. ExPASy TrEMBL
Match: A0A6J1HM04 (ran-binding protein 1 homolog a-like OS=Cucurbita moschata OX=3662 GN=LOC111464836 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.4e-70
Identity = 135/143 (94.41%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MASTDTERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKD 60
           MAS D+ERRD EEAPAGEDEDTGAQVAPIVKLEEV VTTGEENEDA+LDLK+KLYRFDKD
Sbjct: 1   MASADSERRDTEEAPAGEDEDTGAQVAPIVKLEEVVVTTGEENEDAVLDLKAKLYRFDKD 60

Query: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWH 120
           GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSM+VQEHAGNDKSCVWH
Sbjct: 61  GNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMTVQEHAGNDKSCVWH 120

Query: 121 ATDFADGELKDELFCIRFPSIES 144
           ATDFADGELKDELFCIRFPSIE+
Sbjct: 121 ATDFADGELKDELFCIRFPSIEN 143

[Close]

BLAST of Spg005990 vs. TAIR 10
Match: AT1G07140.1 (Pleckstrin homology (PH) domain superfamily protein )

HSP 1 Score: 241.1 bits (614), Expect = 7.2e-64
Identity = 118/137 (86.13%), Postives = 125/137 (91.24%), Query Frame = 0


Query: 7   ERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKE 66
           E RD+EEA A EDEDTGAQVAPIV+LEEVAVTTGEE+EDA+LDLKSKLYRFDKD NQWKE
Sbjct: 9   EHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKE 68

Query: 67  RGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWHATDFAD 126
           RGAGTVKFLKHK TGK+RLVMRQSKTLKICANH V   MSVQEH GN+KSCVWHA DFAD
Sbjct: 69  RGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFAD 128

Query: 127 GELKDELFCIRFPSIES 144
           GELKDELFCIRF SIE+
Sbjct: 129 GELKDELFCIRFASIEN 145

[Close]

BLAST of Spg005990 vs. TAIR 10
Match: AT5G58590.1 (RAN binding protein 1 )

HSP 1 Score: 239.2 bits (609), Expect = 2.8e-63
Identity = 117/144 (81.25%), Postives = 132/144 (91.67%), Query Frame = 0


Query: 1   MASTDTERRD-DEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDK 60
           MAST+ ER + ++E    EDEDTGAQVAPIV+LEEVAVTTGEE+EDA+LDLKSK+YRFDK
Sbjct: 1   MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60

Query: 61  DGNQWKERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVW 120
           +GNQWKERGAGTVK LKHKETGKVRLVMRQSKTLKICANHL+   MSVQEH+GN+KSC+W
Sbjct: 61  EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120

Query: 121 HATDFADGELKDELFCIRFPSIES 144
           HATDF+DGELKDELFCIRF SIE+
Sbjct: 121 HATDFSDGELKDELFCIRFASIEN 144

[Close]

BLAST of Spg005990 vs. TAIR 10
Match: AT2G30060.1 (Pleckstrin homology (PH) domain superfamily protein )

HSP 1 Score: 237.3 bits (604), Expect = 1.0e-62
Identity = 116/139 (83.45%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 5   DTERRDDEEAPAGEDEDTGAQVAPIVKLEEVAVTTGEENEDAILDLKSKLYRFDKDGNQW 64
           + E RD+EE  A EDEDTGAQVAPIV+LEEVAVTTGEE+ED ILDLKSKLYRFDKDG+QW
Sbjct: 9   ERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQW 68

Query: 65  KERGAGTVKFLKHKETGKVRLVMRQSKTLKICANHLVLPSMSVQEHAGNDKSCVWHATDF 124
           KERGAGTVKFLKH+ +GK+RLVMRQSKTLKICANHLV   MSVQEHAGNDKSCVWHA DF
Sbjct: 69  KERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDF 128

Query: 125 ADGELKDELFCIRFPSIES 144
           +DGELKDELFCIRF S+E+
Sbjct: 129 SDGELKDELFCIRFASVEN 147

[Close]

BLAST of Spg005990 vs. TAIR 10
Match: AT3G15970.1 (NUP50 (Nucleoporin 50 kDa) protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.1e-07
Identity = 41/143 (28.67%), Postives = 65/143 (45.45%), Query Frame = 0


Query: 33  EEVAVTTGEENEDAILDLKSKLYRFDKDGNQWKERGAGTVKF-LKHKETGKVRLVMRQSK 92
           ++V+V TGEENE A     S ++ + + G  WKERG G +K  +   E  K RLVMR   
Sbjct: 320 QDVSVETGEENEKAAFTADSVMFEYLEGG--WKERGKGELKVNISTTENRKARLVMRSKG 379

Query: 93  TLKICANHLVLPSMSV--QEHAGNDKSCVWHATDFADG------ELKDELFCIRFPSIES 152
             ++  N  + P M +   +  G   +CV   +D  DG      + KD      F ++  
Sbjct: 380 NYRLTLNASLYPEMKLAKMDKKGITFACVNSVSDAKDGLSTLALKFKDPTVVEEFRAVIE 439

Query: 153 EYNSWATIKDDSYIVSRTVSSSP 167
           E+        ++    +T  +SP
Sbjct: 440 EHKDSKPSVAEAAAPLKTPENSP 460

The following BLAST results are available for this feature:

BLAST of Spg005990 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023519267.1	9.8e-71	95.80	ran-binding protein 1 homolog a-like [Cucurbita pepo subsp. pepo]	[more]
KAG6583353.1	9.8e-71	95.80	Ran-binding protein 1-like c, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_022970593.1	9.8e-71	95.80	ran-binding protein 1 homolog a-like [Cucurbita maxima]	[more]
XP_038894876.1	9.8e-71	95.10	ran-binding protein 1 homolog a [Benincasa hispida]	[more]
XP_022150935.1	1.3e-70	94.41	ran-binding protein 1 homolog a-like [Momordica charantia]	[more]

BLAST of Spg005990 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LMK7	1.0e-62	86.13	Ran-binding protein 1 homolog a OS=Arabidopsis thaliana OX=3702 GN=RANBP1A PE=1 ...	[more]
P92985	3.9e-62	81.25	Ran-binding protein 1 homolog c OS=Arabidopsis thaliana OX=3702 GN=RANBP1C PE=2 ...	[more]
Q8RWG8	1.5e-61	83.45	Ran-binding protein 1 homolog b OS=Arabidopsis thaliana OX=3702 GN=RANBP1B PE=1 ...	[more]
Q09717	4.3e-29	48.57	Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q9ERU9	5.6e-29	48.03	E3 SUMO-protein ligase RanBP2 OS=Mus musculus OX=10090 GN=Ranbp2 PE=1 SV=2	[more]

BLAST of Spg005990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1I4C6	4.7e-71	95.80	ran-binding protein 1 homolog a-like OS=Cucurbita maxima OX=3661 GN=LOC111469534...	[more]
A0A6J1D9U8	6.2e-71	94.41	ran-binding protein 1 homolog a-like OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1HKC3	1.1e-70	95.10	ran-binding protein 1 homolog a-like OS=Cucurbita moschata OX=3662 GN=LOC1114648...	[more]
A0A6J1I618	1.4e-70	94.41	ran-binding protein 1 homolog a-like OS=Cucurbita maxima OX=3661 GN=LOC111469535...	[more]
A0A6J1HM04	1.4e-70	94.41	ran-binding protein 1 homolog a-like OS=Cucurbita moschata OX=3662 GN=LOC1114648...	[more]

BLAST of Spg005990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07140.1	7.2e-64	86.13	Pleckstrin homology (PH) domain superfamily protein	[more]
AT5G58590.1	2.8e-63	81.25	RAN binding protein 1	[more]
AT2G30060.1	1.0e-62	83.45	Pleckstrin homology (PH) domain superfamily protein	[more]
AT3G15970.1	2.1e-07	28.67	NUP50 (Nucleoporin 50 kDa) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000156	Ran binding domain	SMART	SM00160	ranbd_3	coord: 26..155 e-value: 3.9E-36 score: 136.1
IPR000156	Ran binding domain	PFAM	PF00638	Ran_BP1	coord: 37..143 e-value: 3.3E-37 score: 127.4
IPR000156	Ran binding domain	PROSITE	PS50196	RANBD1	coord: 25..142 score: 32.330891
IPR011993	PH-like domain superfamily	GENE3D	2.30.29.30		coord: 9..153 e-value: 2.0E-49 score: 169.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR23138:SF143	RAN-BINDING PROTEIN 1 HOMOLOG A-LIKE ISOFORM X1	coord: 1..143
None	No IPR available	PANTHER	PTHR23138	RAN BINDING PROTEIN	coord: 1..143
None	No IPR available	CDD	cd13179	RanBD_RanBP1	coord: 23..142 e-value: 3.51359E-71 score: 210.118
None	No IPR available	SUPERFAMILY	50729	PH domain-like	coord: 28..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005990.1	Spg005990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046907	intracellular transport
biological_process	GO:0050790	regulation of catalytic activity
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005643	nuclear pore
molecular_function	GO:0005096	GTPase activator activity