Spg005954 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005954
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold11: 1408584 .. 1412825 (+)
RNA-Seq Expression	Spg005954
Synteny	Spg005954

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACAGTTGAATCATATGAGGAAATTCGTTCCTTCAGTAATCATGAAGGTTGAAGCCCGGTATATTCTCGATGGTGGAGGAAGTACGACTGTCGAAGAGGACTTGTATTATACACCAGCAACAATCCTACTGGCATGTAAGGTTCCCTGGAAATCAACATTGAATTGTGTCTTGAAAGGAATATATTATCGTCGGGGCAAAAGCTTTCATTAGAGCATGACTTAAAATTGTTCAGGAAGTGAATTAACCTCATTTTATCGTAAATTTAAATTATAGGCTACAGGTAACCGTAAGGTTCTCTTACCAAAGTCTTCGCTTATGTTGTTACTAATAATCTGAATCCATTTGGATAATCAACTCTGAGTTGAGCATTAGATATGTCATCGGTTCTTAGTAAAAGAACAATAAAAGAATTATCTTGATAGTGGAAACGTCCGATCATTGCACCAGGTTTTATTTACTTATTCATTAAACGCATAAGATTGGAGTATAGAATCTCAACTCAATATGAAAGGATGACACTTCATGTATACCGATATGGATTCACACGGGTTGTAGAGCTTCTTACTAGTGGGTAATGCTGAATTCATTATAGCCTTAGTATTTGGAATAGGAAATGGTAGCGCTTTCTCTATTTTGTCTTCCTACTTTCTTTGCTATCTTTGGTGAATAGGCACTTTTGAGTCTGTACAGTTGGAGATCCTTAATTACGTTGGATAGTTCCCACTTCCACAAACAATGAATTTGCAAATGCGTTCCTTGTGATATCTTTGGAGTTAGGGATTGTGTTAGCCAATTCACTTTCTCTGCCACAGGTATAGGGAGACCCTTAATTGCAAGATAATCACACTGGATGGTTCCCACTTCCTCAAACAATGATTTGCAAACGTGTTAATTGTGATATTTTTGGAGTTAGTGGTTTCCTTAGCCAATTTACATTCTCTGCCACAGCATACCCTCTGCCATATGAGTAGAACAATTATAAAATTATCTTGAAAGTGGGATTGTCGGATAGTTGCCCCAGGCTTTATTTTTTTATTGTTCATACGCATAAGATTGGAGAGTAGAATCAACTCAATATGAAAGAACAACTCTTCATGTATACTGATTCACACGGGTTGAAGAGGCTTTTATTTTTTTAAAAAAAAAATTATTTTATTTGTTCTATCCGTGAGTGTCAGGGCCACCTTGTATGCACCTCAACTATTCTCATAGGACAATTGTCTAATCTTACTATATTTGGTTGCCAAGGTAACTTGTAAGATGTTAAATATTAAGAAAATGACTACCATGAACTCATTCTTTCTCAATCCTTTATTATTTACATAGCTCTTTCTCTAGACCAACCCACCACTACCACTAGGCCAACCCACGAAGCTTCTTACTAGAGGGTAAGGTTGAATTCCTTATAGCCTTTTTATTTGGAATAGGAAATGGTAGAGCTTTCTCTATTTTGTCTCCCCACTTTCTTTGCTATCTGTGAGGATACTAGTAGGGATGTATTAGTGATGTATTAGAAATAGTGGTAGAATATTAGTAAGGGCATAATAGTAATTAATGGTGGTGTTTTGTTTATAAATAGGGGTGTTAGGTTCTTTGAGGGGGGATGGTTTTTGTGGTATTGTTCATTGTGGGACTTTAGGGGGAGACAACCCTCTTGAAAGGCTATAGTTATATTGTAGTTTCGATTCGATATTGCAATATATTAGTATTTCGTGTTCTCTGTGTTCGGGTACCTAACACTATCTTCGGTGAAAAGGCACTTTTGAGTCTGTACAATTGGAGATCCTTATTGGAAAATAATCTCATTGGATGGTTCTCACTTCCACAAACAATGTATTTGCAAATGTGTTAACTCTGATATCTTTTGGAGTTATTGGTTTCCTTAGCCAATTTACATTCTCTGCAGGGTGAAGCAGATGCTATATCAGTCGTTTCATTTGTGCATGCAGACCTTGCTGGTAAAACGAACCTGATACCACCTGCCCCACCCTTCACCGTGAAGTGGAGAAAAGCTTGCTGGTAATAATCTTTTTGTTTCATACCAACTAAAGAGAGACGTGATTGGATTTATATTCTTTTTGTCGTGCCTTTCATGGAACTTAGGACAACATTAGATCATTTAGCATTTGCAACTATGCTTGGAGTGGTTACCACTTTTTGGCCTACTCAAGAGAAAACTTGCTATAATCTCTTTTCACTCCCGGCGTATCTTGAAAAAAGATATGATGTTTTGACAGTGTTTGAGCTGACCCAAAAAAGATGTGGAATGCGACATGATGTAGGCACTGCTGCAATGCAGGTATCTCATTTTCTTATTTAATCCTTTTGATTTCCAAATCTAAATGTTAAACCTTAACCAAAAAAATGGGTGCTTAGGTTTCTTCTTTCTTCTAAGTTACTGGGTAGTTGCGACAAACGTCAGTAGACGTACTAGGATAACCCAATTAGATCGACATAATGCGCCTTAATATGCTATTAAATAGAGAAAAGAACAAGTCAAGAAAACTTAAAAAAGAGTACAAAAAATATCATTTAACACAAAAGAATCGTAGAAGGTTGGAGAAGACCATCACCAAATGTGGGAAGTCAAATTCAGGCTCCTATACAAGCCAATCAATAAGACAATTACCTTCTAAAATATGAGCAACAACAAACTCCATTTGAAAAAGCAAACATAAATATTCATTCTCAACCGAGCATCAATGCTTAAGAGCTTGACAAGATCACAAGCAAAGGATAATGACAAAATAAATAGAATCACTCTCTAGCTATATGTATCGTCAATCAAAGGTCGAAGATAAAGTAATTATGTGAATAGTAGCAACTAGCAATTAAATTGGGTTCAAAACCGAAACAAATATTTGAAGGGTTAGCAAAGCAACCTCCAACAAACCTCTACCATAAAGCTAAGGGACCTACAAATGAAGACATGGATTACTAAATGTAGCTCCATTCATGTTAATATAAAGTCAATTCGGAGGGAAGGTGGATATCAAATAATCTCCAAATGCAGGGTGCTTTAGATGGTCAACTGGAAACGTGAAGACGTTGAAAAATCTGAAGATCAACCGAGATATCATCATAAACAATGATAGACACTTCTCCAATGAAACACCAAGTCAAGAAAAGTGCTTCACTTCCATTGAAAATAAAAGGATTTTGATAGAACCTAGAAAAGAAATAGGATTTAAATAGTGTTGTAAAGACTAATATACTTTTTTAACCGTCTATTTCCTTTTCAATATTCCTATTCTTGTCTCTTCAAATGTTTGTTTATTTCCTAAATCATACAAAATTCATTTGTTAAATATTATGTTATTTGAAAGTAGTTAAAATGGTAACTAGATATATTTATCAGAGCTATAATTTAAGAACAATATGACAAGTACCGTTCTATAATTTTTTTTGTAATATTTCAAGAAAAATTTAATTTGAATGATATTTAAATCTAATTGAATTATCTAACATAATAAAATTTATATATGCTTTTAATATATGCATTTATCTTGAGGCATCAATGTAGATCTAATATATCTCTCTAAAATAATCAAGTGCTTTAATTCAATGGACTGATGTATCATTTATCTTTCTCAACTTCCTCTTTTACTTTCAGCAAAATCCATTTTTTTTCAAACAACTTGTATAATTTTTTTAGAGAATGATATAAATTCTATGCATTGCTTGAGTTTCTAATGCATTGTACTATTTGGCTGTATCAGGCTACTTCATTTTGGCCTTGACTTATTGGACAACTTGCATGTTGTTTGCTTCTTGTTTGCTATTTCTGGTGAGGGTGCAATCCATCTTCACTATTTAACCCACTGTTTGTGTTTCTAATGAATATTAGTTACTTGGACTTGCACACTGATTATGAAACTGTCTCCTTTTATGGACCGACTTGTGCACCAATCCTGGATTTGGCCCAAGATCCATTCAATCGAACTTTTATCAATCCTCTGCTTGGACTTATTTGAACCTTTAGCTACTTGATATGATGCCCCTTTACAGGATAAGGTTTGCCAGTCTACTTTTTATCACTCTTTCGGTGGTGCCTTCTCTATTTTAGGAACATAATATTGCTACTTTTAGCTTGATTCTTGTTGGCATCCTTTCCAGCTTACTTTTCTCAAGCCGTCAGTGTGGCAAATACTGCTTCGGGCTATAGGTTCATTGTGTACTTCTGTTCCTTTCACTTTACAGCCAAATGTGACTCCCTTGGGCAGATTCAAGCCACTT

mRNA sequence

ATGAAACAGTTGAATCATATGAGGAAATTCGTTCCTTCAGTAATCATGAAGGTTGAAGCCCGGTATATTCTCGATGGTGGAGGAAGTACGACTGTCGAAGAGGACTTGTATTATACACCAGCAACAATCCTACTGGCATGTAAGGGTGAAGCAGATGCTATATCAGTCGTTTCATTTGTGCATGCAGACCTTGCTGGTAAAACGAACCTGATACCACCTGCCCCACCCTTCACCGTGAAGTGGAGAAAAGCTTGCTGGACAACATTAGATCATTTAGCATTTGCAACTATGCTTGGAGTGGTTACCACTTTTTGGCCTACTCAAGAGAAAACTTGCTATAATCTCTTTTCACTCCCGGCGTATCTTGAAAAAAGATATGATGTTTTGACAGTGTTTGAGCTGACCCAAAAAAGATGTGGAATGCGACATGATGTAGGCACTGCTGCAATGCAGGATAAGCTTACTTTTCTCAAGCCGTCAGTGTGGCAAATACTGCTTCGGGCTATAGGTTCATTGTGTACTTCTGTTCCTTTCACTTTACAGCCAAATGTGACTCCCTTGGGCAGATTCAAGCCACTT

Coding sequence (CDS)

ATGAAACAGTTGAATCATATGAGGAAATTCGTTCCTTCAGTAATCATGAAGGTTGAAGCCCGGTATATTCTCGATGGTGGAGGAAGTACGACTGTCGAAGAGGACTTGTATTATACACCAGCAACAATCCTACTGGCATGTAAGGGTGAAGCAGATGCTATATCAGTCGTTTCATTTGTGCATGCAGACCTTGCTGGTAAAACGAACCTGATACCACCTGCCCCACCCTTCACCGTGAAGTGGAGAAAAGCTTGCTGGACAACATTAGATCATTTAGCATTTGCAACTATGCTTGGAGTGGTTACCACTTTTTGGCCTACTCAAGAGAAAACTTGCTATAATCTCTTTTCACTCCCGGCGTATCTTGAAAAAAGATATGATGTTTTGACAGTGTTTGAGCTGACCCAAAAAAGATGTGGAATGCGACATGATGTAGGCACTGCTGCAATGCAGGATAAGCTTACTTTTCTCAAGCCGTCAGTGTGGCAAATACTGCTTCGGGCTATAGGTTCATTGTGTACTTCTGTTCCTTTCACTTTACAGCCAAATGTGACTCCCTTGGGCAGATTCAAGCCACTT

Protein sequence

MKQLNHMRKFVPSVIMKVEARYILDGGGSTTVEEDLYYTPATILLACKGEADAISVVSFVHADLAGKTNLIPPAPPFTVKWRKACWTTLDHLAFATMLGVVTTFWPTQEKTCYNLFSLPAYLEKRYDVLTVFELTQKRCGMRHDVGTAAMQDKLTFLKPSVWQILLRAIGSLCTSVPFTLQPNVTPLGRFKPL

Homology

[Close]

BLAST of Spg005954 vs. NCBI nr
Match: KAG6583393.1 (Cytosolic enolase 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 70.5 bits (171), Expect = 1.8e-08
Identity = 33/45 (73.33%), Postives = 37/45 (82.22%), Query Frame = 0


Query: 4  LNHMRKFVPSVIMKVEARYILDGGGSTTVEEDLYYTPATILLACK 49
          LNH RKFVPSVIMK EARY+LDG GS+T E DLYY+ A+I  ACK
Sbjct: 43 LNHARKFVPSVIMKFEARYVLDGRGSSTAEADLYYSSASIPQACK 87

[Close]

BLAST of Spg005954 vs. NCBI nr
Match: XP_022964853.1 (uncharacterized protein LOC111464834 [Cucurbita moschata])

HSP 1 Score: 66.2 bits (160), Expect = 3.4e-07
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 4  LNHMRKFVPSVIMKVEARYILDGGGSTTVEEDLYYTPATI 44
          LNH+RKFVPSVIMK EARY+LDG GS+T E DLYY+ A+I
Sbjct: 43 LNHVRKFVPSVIMKFEARYVLDGRGSSTAEADLYYSSASI 82

[Close]

BLAST of Spg005954 vs. NCBI nr
Match: KAG6606193.1 (Cytosolic enolase 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 65.5 bits (158), Expect = 5.9e-07
Identity = 30/40 (75.00%), Postives = 34/40 (85.00%), Query Frame = 0


Query: 4  LNHMRKFVPSVIMKVEARYILDGGGSTTVEEDLYYTPATI 44
          LNH RKFVPSVIMK EARY+LDG GS+T E DLYY+ A+I
Sbjct: 43 LNHARKFVPSVIMKFEARYVLDGRGSSTAEADLYYSSASI 82

[Close]

BLAST of Spg005954 vs. NCBI nr
Match: KAG7019160.1 (Cytosolic enolase 3, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.3 bits (142), Expect = 4.2e-05
Identity = 29/43 (67.44%), Postives = 33/43 (76.74%), Query Frame = 0


Query: 4  LNHMRKFVPSVIMKVEARYILDGGGSTTVEEDLYYTPATILLA 47
          LNH+RKFVPSVIMK EARY+LDG GS+T E DL   P+  L A
Sbjct: 43 LNHVRKFVPSVIMKFEARYVLDGRGSSTAEADLNSLPSIRLSA 85

[Close]

BLAST of Spg005954 vs. ExPASy TrEMBL
Match: A0A6J1HM49 (uncharacterized protein LOC111464834 OS=Cucurbita moschata OX=3662 GN=LOC111464834 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-07
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 4  LNHMRKFVPSVIMKVEARYILDGGGSTTVEEDLYYTPATI 44
          LNH+RKFVPSVIMK EARY+LDG GS+T E DLYY+ A+I
Sbjct: 43 LNHVRKFVPSVIMKFEARYVLDGRGSSTAEADLYYSSASI 82

The following BLAST results are available for this feature:

BLAST of Spg005954 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6583393.1	1.8e-08	73.33	Cytosolic enolase 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022964853.1	3.4e-07	75.00	uncharacterized protein LOC111464834 [Cucurbita moschata]	[more]
KAG6606193.1	5.9e-07	75.00	Cytosolic enolase 3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
KAG7019160.1	4.2e-05	67.44	Cytosolic enolase 3, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of Spg005954 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HM49	1.7e-07	75.00	uncharacterized protein LOC111464834 OS=Cucurbita moschata OX=3662 GN=LOC1114648...	[more]

BLAST of Spg005954 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005954.1	Spg005954.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008270	zinc ion binding