Spg005923 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005923
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	transcriptional corepressor SEUSS
Location	scaffold11: 2383979 .. 2386703 (+)
RNA-Seq Expression	Spg005923
Synteny	Spg005923

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCGACTTCTCTCATCGATTTCCCTCACGATTTTGTTTCTTCTTCCTTCACGATTTCCCTCTCGACTTCAGACTGCTCTGCTTCGATGGATTCCCTCGCTGAAGGACGTACGGTTGCTTCGACATTGCTTGTTTGACGGACTGCGGCTGCGCGAGTTCAACGGCTGGGTTGTTCGACTTTCTCGACTGCAGCCGCAAATAATAGAAGGTAATCGTAAAGATTCTTGGTTTGTTTGTTCATGGAGGTGAAAACGACGACGCTAGGGACAACGACACGGTGGTTCAAGCTTGTAAACGGCGGTGGAGACGACGGTGAGATTAACAACAGTGAAGGGCGTTTGACGACACTGTAGCAATAACGTTTTTCTAAACGCATTAATGCCTTAACGGGGTTGACTCATTTTAATATTCTACAAACCGTGAGTGGATGAATGAGGTTCTGAAATCGAGCTTGACAAACAACGAAAAGAATGAGGAGAAAGCTTCCAACTGAAAGAAGAAAAAATTTGCCAGGAACGATTACGAAGAATTGAAAGCGAAGTTCAGCAATTTCTCCTAGAAGGCAAAGATTTATTCAGAAACAGGCCTCCACTCCCACCCCTTTCTTCTCCATCCTTCCATCGATGTCAATACATGAGGCATGTTTGATTAGTCATTTGAGAATTCTTGATTTAATTTAGTTGTATGATTGTTAATTTGTTACTGGCTCAAGCGAATTAGATTCATATTTTTTAATTGATTATATTTCTGTGTTGGGGTTCTTGGTAGTCACTAGAATTTTGATTTTGAAATTAAATTAAATCCACTTTTTTGTGTGGTTTGTGTACACTATTTAGTGATGTATTAGAACTTGAACTGATGTTTTGTTCTTCCCCTCTTCTTCTTAATATTGGTTCTGATTGGTTTTGGTTAGTGCTGAAGGACATGGTCAGGTGGGGAAGTCGGTATGGGCGACCAGAGCCTTTGTTCATCAATATATTGGGTTCTAGTTCAATGTGTGTGGTAACTTTTATAGCTTTGTTATTCCTTTCAGATATCTTCATGGGAATTCTTTGCTCGACGCCATGAAGAACTAATTCCTAGGAGATTATTGATACCTCAGGTTTAACTTCGTCGTCTTGTAACACATTAAAATCAGGCCCCATATTATTGCTCTCCATAAAAAAACTACCTTGCATTTAAAATGACCTGCTTATTTGTAAAATTTTCTCTATAATTATCACTATTACAGCCTGTTATCAATCGATTTGTGACTCACATTTACACTCTTTATGCAGGTTAGTCAACTTGGGGTAGCAGCTCAAAAGTACCAGACTGCCATTCAAAACACATCATCCAATTTATCAACTCATGAATTGCAAAATAATTATAACATGTATGTCCTTCTCATCATCATGCGTGTTTCTTTTAACAAATAACTAATCTGTTTACTTCTGTCTGTATGTAGAGCTTCAGTGTGATTTGCTGACACTTTGTTATCATCTTGAAATATAAAGAGGTTTTCATGCCTTCTTTCCCCCTCTTAACCTTGGGCTTTTATGTTTTGCTCTTCGCAGGCAATGATTATTTATTACCGTTAGAATCATGATTTGTTTCTTCTAATCCTATAAGGCCTTTGCTTTAACTTTTCCATAAACATAATTTTGTCAGTTCATGCCTTATCTACTACTATATATGGCCTTATGGCATTGATTGTTTATTCTAATATGCATTGTGATTATGAAATTATTTTGAGCATTCATTCACTAGGGAGCATGGAATTATCTTGGCATTCATTCCTTGGTTGGAAAGATTTGTATTTTACATGATGCTTGATTTTTATTTTGCGTTGACCTATGACTATCAGATGGGTGGCCTTATATAATGGGCGTATGTGGGCATCTCTAGAAAATCAGATTCTTAGATGTTTTATGCAAACTACACCAAATCTTTTCACGTTCTTATAGATGAAGTATATCAATTGGTTAACACTAACTTTTGCGTGCTTTGTTTTGAAATTAATTATGTTTTTGAAGCTCATTCAAGCCCTTAATGAATTATGCATAGGTTTGTGGCTTCAGCGCGACAATTAGCTAAAGCCTTGGAAGTTCTGCTAGTAAATGACTTGGGATATACAAAGAGATACGTATGTTGTCTTCAGGTAATTCATAACTCCGATCCGTCAATTTGTGGTTGTTATGAGTAAAAAAAGTTGAAGGTTGTGGGCATTAAGTGACAATTGAGTATAAATATTATTTTCAGTATTTATTTCTATGATATTCTTTAATGTTAATTATCGATATTGTTGTCTTTTACATGGGGTTGTTATTATTGATAGACACTCAGTATATATGATACTTTTTCTTAAATTAATTATAATCGTAATATCTATTTTTTGTTTTTTTTTTTTGTAGTTTAATACTAAGAATTCGTTCACACAAGAACAGTTGGACGAGGTACGAGTTGAATGGGTGGGATATGTGTCAAACTTCACGTGAAGTATCCATCCTTGTGGTAGCTAGCTGTTTCCTTTTAGACGATATAGGATGTGTAAGATTTTCTTGACATATATATGTGGTATTTTGAATGGACAAAAAAACGATTGTACTTACATTTTATTCTTTTTGTAAATATTTCAGTTTACTATATAGTTTAGAACAATTTAGTGGTTTTGGATATTGTATTGTGAAGTTTGGAGTTTTTTGGATCGAATGAAATAAAGTATTTGATGTTTTCTCAATTG

mRNA sequence

ATGAATCGACTTCTCTCATCGATTTCCCTCACGATTTTGTTTCTTCTTCCTTCACGATTTCCCTCTCGACTTCAGACTGCTCTGCTTCGATGGATTCCCTCGCTGAAGGACGTACGGTTGCTTCGACATTGCTTGTTTGACGGACTGCGGCTGCGCGAGTTCAACGGCTGGGTTGTTCGACTTTCTCGACTGCAGCCGCAAATAATAGAAGGACATGGTCAGGTGGGGAAGTCGATATCTTCATGGGAATTCTTTGCTCGACGCCATGAAGAACTAATTCCTAGGAGATTATTGATACCTCAGGTTAGTCAACTTGGGGTAGCAGCTCAAAAGTACCAGACTGCCATTCAAAACACATCATCCAATTTATCAACTCATGAATTGCAAAATAATTATAACATGTTTGTGGCTTCAGCGCGACAATTAGCTAAAGCCTTGGAAGTTCTGCTAGTAAATGACTTGGGATATACAAAGAGATACGTATGTTGTCTTCAGTTTAATACTAAGAATTCGTTCACACAAGAACAGTTGGACGAGGTACGAGTTGAATGGGTGGGATATGTGTCAAACTTCACGTGA

Coding sequence (CDS)

ATGAATCGACTTCTCTCATCGATTTCCCTCACGATTTTGTTTCTTCTTCCTTCACGATTTCCCTCTCGACTTCAGACTGCTCTGCTTCGATGGATTCCCTCGCTGAAGGACGTACGGTTGCTTCGACATTGCTTGTTTGACGGACTGCGGCTGCGCGAGTTCAACGGCTGGGTTGTTCGACTTTCTCGACTGCAGCCGCAAATAATAGAAGGACATGGTCAGGTGGGGAAGTCGATATCTTCATGGGAATTCTTTGCTCGACGCCATGAAGAACTAATTCCTAGGAGATTATTGATACCTCAGGTTAGTCAACTTGGGGTAGCAGCTCAAAAGTACCAGACTGCCATTCAAAACACATCATCCAATTTATCAACTCATGAATTGCAAAATAATTATAACATGTTTGTGGCTTCAGCGCGACAATTAGCTAAAGCCTTGGAAGTTCTGCTAGTAAATGACTTGGGATATACAAAGAGATACGTATGTTGTCTTCAGTTTAATACTAAGAATTCGTTCACACAAGAACAGTTGGACGAGGTACGAGTTGAATGGGTGGGATATGTGTCAAACTTCACGTGA

Protein sequence

MNRLLSSISLTILFLLPSRFPSRLQTALLRWIPSLKDVRLLRHCLFDGLRLREFNGWVVRLSRLQPQIIEGHGQVGKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLDEVRVEWVGYVSNFT

Homology

[Close]

BLAST of Spg005923 vs. NCBI nr
Match: GAY58520.1 (hypothetical protein CUMW_187600 [Citrus unshiu])

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-32
Identity = 81/111 (72.97%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 76  GKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMF 135
           G  I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQ A QN SSNLS  ELQNN NMF
Sbjct: 329 GFGICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMF 388

Query: 136 VASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLDEVRVEWVG 187
           VASARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D  RV   G
Sbjct: 389 VASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTG 439

[Close]

BLAST of Spg005923 vs. NCBI nr
Match: KAG7025020.1 (Transcriptional corepressor SEUSS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-32
Identity = 79/100 (79.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 79  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVAS 138
           I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQTAIQN SSNLST ELQNN NMFV S
Sbjct: 485 ICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNASSNLSTSELQNNCNMFVGS 544

Query: 139 ARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD 179
           ARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Sbjct: 545 ARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLID 584

[Close]

BLAST of Spg005923 vs. NCBI nr
Match: XP_023535043.1 (transcriptional corepressor SEUSS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-32
Identity = 79/100 (79.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 79  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVAS 138
           I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQTAIQN SSNLST ELQNN NMFV S
Sbjct: 484 ICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNASSNLSTSELQNNCNMFVGS 543

Query: 139 ARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD 179
           ARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Sbjct: 544 ARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLID 583

[Close]

BLAST of Spg005923 vs. NCBI nr
Match: KAG6592158.1 (Transcriptional corepressor SEUSS, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-32
Identity = 79/100 (79.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 79  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVAS 138
           I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQTAIQN SSNLST ELQNN NMFV S
Sbjct: 485 ICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNASSNLSTSELQNNCNMFVGS 544

Query: 139 ARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD 179
           ARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Sbjct: 545 ARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLID 584

[Close]

BLAST of Spg005923 vs. NCBI nr
Match: XP_022936064.1 (transcriptional corepressor SEUSS [Cucurbita moschata])

HSP 1 Score: 150.2 bits (378), Expect = 1.8e-32
Identity = 79/100 (79.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 79  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVAS 138
           I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQTAIQN SSNLST ELQNN NMFV S
Sbjct: 484 ICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNASSNLSTSELQNNCNMFVGS 543

Query: 139 ARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD 179
           ARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Sbjct: 544 ARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLID 583

[Close]

BLAST of Spg005923 vs. ExPASy Swiss-Prot
Match: Q8W234 (Transcriptional corepressor SEUSS OS=Arabidopsis thaliana OX=3702 GN=SEU PE=1 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.6e-31
Identity = 74/112 (66.07%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 79  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVAS 138
           I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQ A QN +++ +  ELQNN NMFVAS
Sbjct: 451 IFSWEFCARRHEELIPRRLLIPQVSQLGSAAQKYQQAAQNATTDSALPELQNNCNMFVAS 510

Query: 139 ARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLDEVRVEWVGYVSN 191
           ARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D  R    G + +
Sbjct: 511 ARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETRTGPIES 562

[Close]

BLAST of Spg005923 vs. ExPASy Swiss-Prot
Match: Q94BP0 (Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana OX=3702 GN=SLK2 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-20
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 70  EGHGQVGKS----ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLS 129
           EGH ++  S    I SWEF  RRHEEL+PRRL+ PQV+QL   A+K Q+ I Q+ S  + 
Sbjct: 428 EGHLRIIFSQELKILSWEFCTRRHEELLPRRLVAPQVNQLLQVAEKCQSTIDQSGSDGIH 487

Query: 130 THELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLDEVRVEW 187
             +LQ N NM +A+ RQLAK+LE   +NDLG++KRYV CLQ +   S  ++ +D  R + 
Sbjct: 488 QQDLQANSNMVMAAGRQLAKSLESHSLNDLGFSKRYVRCLQISEVVSSMKDMIDFCRDQK 547

[Close]

BLAST of Spg005923 vs. ExPASy Swiss-Prot
Match: Q0WVM7 (Probable transcriptional regulator SLK1 OS=Arabidopsis thaliana OX=3702 GN=SLK1 PE=1 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.5e-18
Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 47  DGLRLREFNGWVVRLSRLQPQII-EGHGQV----GKSISSWEFFARRHEELIPRRLLIPQ 106
           +GL + E+   V      Q +++ EGH ++       I SWEF ARRHEEL+ RRL+ PQ
Sbjct: 301 NGLMMLEYRKAVQETVHEQFRVVREGHLRIIFSQDLKILSWEFCARRHEELLLRRLIAPQ 360

Query: 107 VSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRY 166
           V+QL   AQK Q+ I ++ S  +S  +LQ+N NM + + RQLAK +E+  +NDLGY KRY
Sbjct: 361 VNQLLQVAQKCQSTISESGSEGVSQQDLQSNSNMVLGAGRQLAKFMELQSLNDLGYPKRY 420

Query: 167 VCCLQFN 168
           +  LQ +
Sbjct: 421 IRTLQIS 427

[Close]

BLAST of Spg005923 vs. ExPASy Swiss-Prot
Match: F4JT98 (Probable transcriptional regulator SLK3 OS=Arabidopsis thaliana OX=3702 GN=SLK3 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 7.6e-18
Identity = 55/127 (43.31%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 47  DGLRLREFNGWVVRLSRLQPQII-EGHGQV----GKSISSWEFFARRHEELIPRRLLIPQ 106
           +GL + E+   V      Q +++ EGH ++       I SWEF ARRHEEL+ RRL+ PQ
Sbjct: 273 NGLMMLEYRKAVQETVHEQFRVVREGHLRIIFSPDLKILSWEFCARRHEELLLRRLIAPQ 332

Query: 107 VSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRY 166
           V+QL   AQK Q+ I ++ S  +S  ++Q+N NM + + RQLAK +E+  +NDLGY KRY
Sbjct: 333 VNQLLQVAQKCQSTISESGSQGVSQQDIQSNSNMVLGAGRQLAKFMELQSLNDLGYPKRY 392

Query: 167 VCCLQFN 168
           +  LQ +
Sbjct: 393 IRTLQIS 399

[Close]

BLAST of Spg005923 vs. ExPASy TrEMBL
Match: A0A2H5Q1J9 (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_187600 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 6.7e-33
Identity = 81/111 (72.97%), Postives = 86/111 (77.48%), Query Frame = 0


Query: 76  GKSISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMF 135
           G  I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQ A QN SSNLS  ELQNN NMF
Sbjct: 329 GFGICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQAATQNASSNLSAPELQNNCNMF 388

Query: 136 VASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLDEVRVEWVG 187
           VASARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D  RV   G
Sbjct: 389 VASARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRVTGTG 439

[Close]

BLAST of Spg005923 vs. ExPASy TrEMBL
Match: A0A6J1F783 (transcriptional corepressor SEUSS OS=Cucurbita moschata OX=3662 GN=LOC111442779 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 8.7e-33
Identity = 79/100 (79.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 79  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVAS 138
           I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQTAIQN SSNLST ELQNN NMFV S
Sbjct: 484 ICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNASSNLSTSELQNNCNMFVGS 543

Query: 139 ARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD 179
           ARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D
Sbjct: 544 ARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLID 583

[Close]

BLAST of Spg005923 vs. ExPASy TrEMBL
Match: A0A6J1IIT6 (transcriptional corepressor SEUSS-like OS=Cucurbita maxima OX=3661 GN=LOC111474446 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 1.1e-32
Identity = 78/100 (78.00%), Postives = 84/100 (84.00%), Query Frame = 0


Query: 79  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVAS 138
           I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQTAIQN SSNLST ELQNN NMFV S
Sbjct: 485 ICSWEFCARRHEELIPRRLLIPQVSQLGAAAQKYQTAIQNASSNLSTSELQNNCNMFVGS 544

Query: 139 ARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLD 179
           ARQLAKALEV LVNDLGYTKRY+ CLQ +   +  ++ +D
Sbjct: 545 ARQLAKALEVPLVNDLGYTKRYIRCLQISEVVNSMKDLID 584

[Close]

BLAST of Spg005923 vs. ExPASy TrEMBL
Match: A0A5D3DJE8 (Transcriptional corepressor SEUSS-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G00850 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 79/108 (73.15%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 79  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVAS 138
           I SWEF ARRHEELIPRRLLIPQVS LG AAQK+Q+AIQNTSSNLST ELQNN NMFVAS
Sbjct: 487 ICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKFQSAIQNTSSNLSTPELQNNCNMFVAS 546

Query: 139 ARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLDEVRVEWVG 187
           ARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D  +   +G
Sbjct: 547 ARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGIG 594

[Close]

BLAST of Spg005923 vs. ExPASy TrEMBL
Match: A0A0A0KCR7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G343700 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 1.5e-32
Identity = 79/108 (73.15%), Postives = 88/108 (81.48%), Query Frame = 0


Query: 79  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVAS 138
           I SWEF ARRHEELIPRRLLIPQVS LG AAQK+Q+AIQNTSSNLST ELQNN NMFVAS
Sbjct: 488 ICSWEFCARRHEELIPRRLLIPQVSHLGAAAQKFQSAIQNTSSNLSTPELQNNCNMFVAS 547

Query: 139 ARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLDEVRVEWVG 187
           ARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D  +   +G
Sbjct: 548 ARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSKETGIG 595

[Close]

BLAST of Spg005923 vs. TAIR 10
Match: AT1G43850.1 (SEUSS transcriptional co-regulator )

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-32
Identity = 74/112 (66.07%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 79  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVAS 138
           I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQ A QN +++ +  ELQNN NMFVAS
Sbjct: 451 IFSWEFCARRHEELIPRRLLIPQVSQLGSAAQKYQQAAQNATTDSALPELQNNCNMFVAS 510

Query: 139 ARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLDEVRVEWVGYVSN 191
           ARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D  R    G + +
Sbjct: 511 ARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETRTGPIES 562

[Close]

BLAST of Spg005923 vs. TAIR 10
Match: AT1G43850.2 (SEUSS transcriptional co-regulator )

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-32
Identity = 74/112 (66.07%), Postives = 85/112 (75.89%), Query Frame = 0


Query: 79  ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAIQNTSSNLSTHELQNNYNMFVAS 138
           I SWEF ARRHEELIPRRLLIPQVSQLG AAQKYQ A QN +++ +  ELQNN NMFVAS
Sbjct: 451 IFSWEFCARRHEELIPRRLLIPQVSQLGSAAQKYQQAAQNATTDSALPELQNNCNMFVAS 510

Query: 139 ARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLDEVRVEWVGYVSN 191
           ARQLAKALEV LVNDLGYTKRYV CLQ +   +  ++ +D  R    G + +
Sbjct: 511 ARQLAKALEVPLVNDLGYTKRYVRCLQISEVVNSMKDLIDYSRETRTGPIES 562

[Close]

BLAST of Spg005923 vs. TAIR 10
Match: AT5G62090.1 (SEUSS-like 2 )

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-21
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 70  EGHGQVGKS----ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLS 129
           EGH ++  S    I SWEF  RRHEEL+PRRL+ PQV+QL   A+K Q+ I Q+ S  + 
Sbjct: 428 EGHLRIIFSQELKILSWEFCTRRHEELLPRRLVAPQVNQLLQVAEKCQSTIDQSGSDGIH 487

Query: 130 THELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLDEVRVEW 187
             +LQ N NM +A+ RQLAK+LE   +NDLG++KRYV CLQ +   S  ++ +D  R + 
Sbjct: 488 QQDLQANSNMVMAAGRQLAKSLESHSLNDLGFSKRYVRCLQISEVVSSMKDMIDFCRDQK 547

[Close]

BLAST of Spg005923 vs. TAIR 10
Match: AT5G62090.2 (SEUSS-like 2 )

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-21
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 0


Query: 70  EGHGQVGKS----ISSWEFFARRHEELIPRRLLIPQVSQLGVAAQKYQTAI-QNTSSNLS 129
           EGH ++  S    I SWEF  RRHEEL+PRRL+ PQV+QL   A+K Q+ I Q+ S  + 
Sbjct: 428 EGHLRIIFSQELKILSWEFCTRRHEELLPRRLVAPQVNQLLQVAEKCQSTIDQSGSDGIH 487

Query: 130 THELQNNYNMFVASARQLAKALEVLLVNDLGYTKRYVCCLQFNTKNSFTQEQLDEVRVEW 187
             +LQ N NM +A+ RQLAK+LE   +NDLG++KRYV CLQ +   S  ++ +D  R + 
Sbjct: 488 QQDLQANSNMVMAAGRQLAKSLESHSLNDLGFSKRYVRCLQISEVVSSMKDMIDFCRDQK 547

[Close]

BLAST of Spg005923 vs. TAIR 10
Match: AT4G25520.1 (SEUSS-like 1 )

HSP 1 Score: 92.8 bits (229), Expect = 3.2e-19
Identity = 56/127 (44.09%), Postives = 80/127 (62.99%), Query Frame = 0


Query: 47  DGLRLREFNGWVVRLSRLQPQII-EGHGQV----GKSISSWEFFARRHEELIPRRLLIPQ 106
           +GL + E+   V      Q +++ EGH ++       I SWEF ARRHEEL+ RRL+ PQ
Sbjct: 301 NGLMMLEYRKAVQETVHEQFRVVREGHLRIIFSQDLKILSWEFCARRHEELLLRRLIAPQ 360

Query: 107 VSQLGVAAQKYQTAI-QNTSSNLSTHELQNNYNMFVASARQLAKALEVLLVNDLGYTKRY 166
           V+QL   AQK Q+ I ++ S  +S  +LQ+N NM + + RQLAK +E+  +NDLGY KRY
Sbjct: 361 VNQLLQVAQKCQSTISESGSEGVSQQDLQSNSNMVLGAGRQLAKFMELQSLNDLGYPKRY 420

Query: 167 VCCLQFN 168
           +  LQ +
Sbjct: 421 IRTLQIS 427

The following BLAST results are available for this feature:

BLAST of Spg005923 vs. NCBI nr


Match Name	E-value	Identity	Description
GAY58520.1	1.4e-32	72.97	hypothetical protein CUMW_187600 [Citrus unshiu]	[more]
KAG7025020.1	1.8e-32	79.00	Transcriptional corepressor SEUSS, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023535043.1	1.8e-32	79.00	transcriptional corepressor SEUSS-like [Cucurbita pepo subsp. pepo]	[more]
KAG6592158.1	1.8e-32	79.00	Transcriptional corepressor SEUSS, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022936064.1	1.8e-32	79.00	transcriptional corepressor SEUSS [Cucurbita moschata]	[more]

BLAST of Spg005923 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8W234	1.6e-31	66.07	Transcriptional corepressor SEUSS OS=Arabidopsis thaliana OX=3702 GN=SEU PE=1 SV...	[more]
Q94BP0	2.8e-20	48.36	Probable transcriptional regulator SLK2 OS=Arabidopsis thaliana OX=3702 GN=SLK2 ...	[more]
Q0WVM7	4.5e-18	44.09	Probable transcriptional regulator SLK1 OS=Arabidopsis thaliana OX=3702 GN=SLK1 ...	[more]
F4JT98	7.6e-18	43.31	Probable transcriptional regulator SLK3 OS=Arabidopsis thaliana OX=3702 GN=SLK3 ...	[more]

BLAST of Spg005923 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2H5Q1J9	6.7e-33	72.97	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_187600 PE=4 SV=1	[more]
A0A6J1F783	8.7e-33	79.00	transcriptional corepressor SEUSS OS=Cucurbita moschata OX=3662 GN=LOC111442779 ...	[more]
A0A6J1IIT6	1.1e-32	78.00	transcriptional corepressor SEUSS-like OS=Cucurbita maxima OX=3661 GN=LOC1114744...	[more]
A0A5D3DJE8	1.5e-32	73.15	Transcriptional corepressor SEUSS-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A0A0KCR7	1.5e-32	73.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G343700 PE=4 SV=1	[more]

BLAST of Spg005923 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43850.1	1.1e-32	66.07	SEUSS transcriptional co-regulator	[more]
AT1G43850.2	1.1e-32	66.07	SEUSS transcriptional co-regulator	[more]
AT5G62090.1	2.0e-21	48.36	SEUSS-like 2	[more]
AT5G62090.2	2.0e-21	48.36	SEUSS-like 2	[more]
AT4G25520.1	3.2e-19	44.09	SEUSS-like 1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029005	LIM-domain binding protein/SEUSS	PFAM	PF01803	LIM_bind	coord: 79..166 e-value: 1.1E-8 score: 34.9
IPR029005	LIM-domain binding protein/SEUSS	PANTHER	PTHR10378	LIM DOMAIN-BINDING PROTEIN	coord: 79..166
None	No IPR available	PANTHER	PTHR10378:SF24	EXPRESSED PROTEIN	coord: 79..166

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005923.1	Spg005923.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000122	negative regulation of transcription by RNA polymerase II
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription regulator complex