Spg005910 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005910
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	sister chromatid cohesion protein SCC4
Location	scaffold11: 51389 .. 55253 (+)
RNA-Seq Expression	Spg005910
Synteny	Spg005910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTATTGTTCGGAAGATGGAGCCAAAACCAACCTTACGGTATTTGACGGAATCGAAACATGCGCGCATGAATTAAAATTTAAAGTCTTGGCTAATTTGGGCCCAAGGCCCATTATTTTGATTTAGGTCTGCAGCAACTTATAAATACACAAGTTGAGAGTTCAATTTTGACGACTACCATTTGCAGCTGGAGCAAATTTTTGGTGGTGGCCTTTTCTTCTATTACAGTCTTGTGTGTGAAGCTGAATAGTTTTTCAGCATTCAATTTGTGCGGCAGTGAGGTAATTGAGAGAGAATAGTGTTTTCTCTAGTTGGATTGAGGGTTTATCTGGCTGTTTATCCCAAGCTACTAGGTCATGGTATTTGGAAGTCAATAGCTTTTGTTGTGCTATAGAGAGTTGGTTGGTTTGTAGCGCGAGGTTGAGGGCTTCTTGTAATCTCTAAAATTATAGTAGAACCTGCCGTTGCAAAAGACTGGACGTAGTCTCGAGTTTGAGACGAACCTAGCTTTTAGTGTCATTTTTTTTTCCTATCTCTTTTTTTTTTGTTCATGATTATTACTAACTTATTTGGCTTAACCGGGAGAAGAGGAGATAATTATAGTATTATTGATTTTTGTCATAATATACTATTTCTATATTCTGTGTTTTTCTCCCAACACATCAGGTGAAAGTCGATGTCACCTTTTCTTCTTATGTTCATATGTTGCAAGATTTTAGGTTCTCTATTTAAGGTTTTTAAGATTCCACTTTTTTTTTATCTCTTCGGCTATTATATGAGCCGTTTTTATCTCATGGTCATTTGCTATGGGTTCATGCAGTCAAATCTATATCTCCTAATGGTGGGAATTGATGCACATAATTAGTAATTGTTTTGTAATTTTTATTTGAATGGCTAATTGTTTTAGTTTGTAGTTAGTTGTACTTGTTTATCTAGTGTGTAGGTTCCTATTATTCCCGATAAATAGAGGGTCAATCTCTTGTAGTAGTATACTTTCAATCATAATAAACTCCTTTGGATTAAATTTCTTGGAGAAATCTTTCTACACTACACCACAGCCTTTATTGTTAATATATATTATTAAGTTCTCATTTCTTTAGGGGAAAAATCTCTTATTTTATCTATTTATTGATTGTAAGTAGCATTACAGGCACTTGACTTGATTGGACCAGTTTACAGAATGATGGATTCTTTTGTTGGAGTTCGAGAGAAAACCAGTGTTCTTTTTGCTTATGGCCTCTTACTGATGAAGCAACATGATTTACAAGAAGCAAGGTATTTTTTTTCATTTAGATAGGAGAACACATCAGGTATTTGAGGTCTTAACCTTTCCCTGCAAGGTTTGAAGTGGCTAACTGCCACCTTATAGTGAGTGATAATCCTTTGCAAAGTCATGTGTCTATTTGCATTTTTTTCATGGCCCTTATTTAAACTTTATTCTGTTAACCTCTATACAAATCAGCCAGATTTCAAATTAAGAAAACAGGGGTAGGAAAAGAAAATTTTAATATGCTAATCTAGGACGTTTGGCCATAAATATTGCTGCAAGAATCAAGTGATCAATGACCTGCATATCTATAGTTTCCAGCTATATGTTATCAGTCAGCAGCTGTTACTTTTTCCTTCTGTAACGATTCCTTGTATGTTATCTAACTTTTTGTCTCTTCAGCTGTAAATTGTTTTGATATTTGTATCTTATCAATATATTAGGTTCTAGTTAAAGTTGAGATGGATGTGGCAAAACAATACTCCACTGAATCCTATTATAATTTAGGACCAAATATACTTCTGGTTCATTTGAGGTTGGTGTTTATTTGGTCCCTACGGTTTCAAAAGGTATACTTTTAGTTCTTTGAGGTTTGAAAAGGGTTCTAAATGATCTTTGGCTCAAATTGACCATTAATTAACTAACAGGAAAAATGGCATGCCAGTTATTTGCAATTAATGGCAAATTTGAGTCCAAGTACCATTTAGACCTATTTTTCAAACCTCAAGATCCAAAAGAGTTTACTTTTTCTCAACAATGGCTAGTAAACCAAATCAAAATAACTCAGAATATTTTTCTTCGGCTCAAAATATAAAAATGATCAGTCACTATCTTAAAAATAAAACCAGCCTCACCTCCCATATTTCCAAAATTGGTGATTTTCCACTGCACTCACTGGAACCAACCCTTGGATTGTTCAAGGCCTCAAAGGATATGTACCTATCTTAAAAATATGTACCAAGTTATCGTGTCATTGATGTTGGGAAAGAAGCATGCCCACCGTCAGCTAAAGGTGTTATTTTTCCTCTTCCTCAGAAATCGATTGGCGAAAGGATTACAATTGACCCACAATCATTTGGGGAATCTTCAACTTGTTGCACAATATTTGACAATCCTCGGGAGTTTGGCACTCGCTCTACATGACACTGTCCAAGCCAGAGAGATATTGAGATCATCATTAACATTGGCAAAGAAACTCTATGACATCCCAACTCAGATCTGGGTACTATCAGTTTTAACAAGTATGCATGTGATTTATATATTCTTTCTAGTTTCTATTAATATTTTAGTGCAATGATATTTTCACAAGGTACCTAGAATGAAGAACACATGCTGGGAGAAACTGTTTCAGAACCTTATTTTTTTCACACATTCAAATAAAGTGATTTAGTCGTCATACACGTCTAAATTTGTGAGCATAAGCATGAGAAGGGTGCGGCTGTGTGAAGGGTAGTTTGCATTTGTTAGAGTTGGACCCATATACTTTTTCGTAGTTAGAATGAGGGCCACGTAAGGGAGGGCTATTATAGTGGAAGCGTTTGTGAGAGGGTATCTTTTTTCTGCATTTTTCTGCTTCAACATTCTCTGTAGAGAATTTTGGAGATGCGGGGAGCTCTCTAATCTCCCTTGTTACATGATAAAATCAATTGTTGGCTTAGGCCTAGTCTAACACAGAACCCTTTTCCTTTTCCTTTTTCTTTCTTTTTTTGCCCATCTGGCTCTCTTAAGAGTCTGTCTCCAGAAATATTTTGTTACACTTTCTGATCCAGTTGATGTGTATTATATTAATGCACGTACAAATTTGTTTTTCTTTTTTTGAATATATTTATAGCTTTATACCAAGAGTTGGGTGAGAAAGGAAATGAGATGGAGAACACGGAATATCAATGTAAAAAGGCAGATGATCTGCAAAAGAGATTGGTTGATGCGCATTCATCCATTCATCACATCGAATTAGTAAGGCATTCATGTTGTTTCTGATCTTTTGATGAATAGTTAGTGAATTCCAACAGATGTTTCGTCAAGCATATGCACTTACTACGTATTGCTTCTTTTACCCCGTTGTGTATTTAGATTGACAAGGTACGACTTGAAATTCAGCAACTTAAGGAGGTTGACATCAAGCGTGCAATAGGTGGCCCGGCCCTTGGAGTTGATCTTGATATACCAGAATCCGTTGGTGTATCTGTTTCGTTGCCGACTTCATCATTGAAGCTTATGGATATGGACACAGGGAGACGTGGAAAGAGGAAAATTTAATACACTTGTAAATATTAAATTTATTGCTCACTTTAAATTATTGTTTAAAAACCTTTTTAGAAAAAGACTAATTACAGGTGTGCAAAAATCGATTGAAACCAGGGAATTGAATCGACTAGTTTGATCCAATTTTTTGGTCATAAATATACGTGTAATTTTAAAACATGGCCAGCAGGATTTTAGGAGGGATTCGGTCTGCATCATGTTTTTTCACTTTTTCCCCTGGACGCATATGCACTCGGACTCTCTTCCTTCACGGAAATTGTTTTTGCACTATATTGTCTTCTATTTTTTCGTTTTTTACAAATTTTTTTCCAAGATTATCTTTTTATTATCT

mRNA sequence

ATGCTTATTGTTCGGAAGATGGAGCCAAAACCAACCTTACGCTGGAGCAAATTTTTGGTGGTGGCCTTTTCTTCTATTACAGTCTTGTGTGTGAAGCTGAATAGTTTTTCAGCATTCAATTTGTGCGGCAGTGAGGCACTTGACTTGATTGGACCAGTTTACAGAATGATGGATTCTTTTGTTGGAGTTCGAGAGAAAACCAGTGTTCTTTTTGCTTATGGCCTCTTACTGATGAAGCAACATGATTTACAAGAAGCAAGAAATCGATTGGCGAAAGGATTACAATTGACCCACAATCATTTGGGGAATCTTCAACTTGTTGCACAATATTTGACAATCCTCGGGAGTTTGGCACTCGCTCTACATGACACTGTCCAAGCCAGAGAGATATTGAGATCATCATTAACATTGGCAAAGAAACTCTATGACATCCCAACTCAGATCTGGGTACTATCAGTTTTAACAACTTTATACCAAGAGTTGGGTGAGAAAGGAAATGAGATGGAGAACACGGAATATCAATGTAAAAAGGCAGATGATCTGCAAAAGAGATTGGTTGATGCGCATTCATCCATTCATCACATCGAATTAATTGACAAGGTACGACTTGAAATTCAGCAACTTAAGGAGGTTGACATCAAGCGTGCAATAGGTGGCCCGGCCCTTGGAGTTGATCTTGATATACCAGAATCCGTTGGTGTATCTGTTTCGTTGCCGACTTCATCATTGAAGCTTATGGATATGGACACAGGGAGACGTGGAAAGAGGAAAATTTAA

Coding sequence (CDS)

ATGCTTATTGTTCGGAAGATGGAGCCAAAACCAACCTTACGCTGGAGCAAATTTTTGGTGGTGGCCTTTTCTTCTATTACAGTCTTGTGTGTGAAGCTGAATAGTTTTTCAGCATTCAATTTGTGCGGCAGTGAGGCACTTGACTTGATTGGACCAGTTTACAGAATGATGGATTCTTTTGTTGGAGTTCGAGAGAAAACCAGTGTTCTTTTTGCTTATGGCCTCTTACTGATGAAGCAACATGATTTACAAGAAGCAAGAAATCGATTGGCGAAAGGATTACAATTGACCCACAATCATTTGGGGAATCTTCAACTTGTTGCACAATATTTGACAATCCTCGGGAGTTTGGCACTCGCTCTACATGACACTGTCCAAGCCAGAGAGATATTGAGATCATCATTAACATTGGCAAAGAAACTCTATGACATCCCAACTCAGATCTGGGTACTATCAGTTTTAACAACTTTATACCAAGAGTTGGGTGAGAAAGGAAATGAGATGGAGAACACGGAATATCAATGTAAAAAGGCAGATGATCTGCAAAAGAGATTGGTTGATGCGCATTCATCCATTCATCACATCGAATTAATTGACAAGGTACGACTTGAAATTCAGCAACTTAAGGAGGTTGACATCAAGCGTGCAATAGGTGGCCCGGCCCTTGGAGTTGATCTTGATATACCAGAATCCGTTGGTGTATCTGTTTCGTTGCCGACTTCATCATTGAAGCTTATGGATATGGACACAGGGAGACGTGGAAAGAGGAAAATTTAA

Protein sequence

MLIVRKMEPKPTLRWSKFLVVAFSSITVLCVKLNSFSAFNLCGSEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVDLDIPESVGVSVSLPTSSLKLMDMDTGRRGKRKI

Homology

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BLAST of Spg005910 vs. NCBI nr
Match: XP_022158435.1 (sister chromatid cohesion protein SCC4 [Momordica charantia])

HSP 1 Score: 395.2 bits (1014), Expect = 4.3e-106
Identity = 205/215 (95.35%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 44  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 103
           ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN
Sbjct: 507 TQALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 566

Query: 104 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 163
           LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE
Sbjct: 567 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 626

Query: 164 KGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALG 223
           KGNEMEN EYQ KKADDLQKRL DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGP+LG
Sbjct: 627 KGNEMENAEYQSKKADDLQKRLADAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLG 686

Query: 224 VDLDIPESVGVSVSLPTSSLKLMDMDTGRRGKRKI 259
           V+LDIPESVGVSVSLPTSSLKL+D+DTGRRGKRK+
Sbjct: 687 VNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL 721

[Close]

BLAST of Spg005910 vs. NCBI nr
Match: XP_023521217.1 (sister chromatid cohesion protein SCC4 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023521218.1 sister chromatid cohesion protein SCC4 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 393.3 bits (1009), Expect = 1.6e-105
Identity = 203/215 (94.42%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 44  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 103
           ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN
Sbjct: 507 TQALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 566

Query: 104 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 163
           LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE
Sbjct: 567 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 626

Query: 164 KGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALG 223
           KGNEMEN EYQ KKADDLQKRLVDAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGP+LG
Sbjct: 627 KGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQQLKEVDMKRAIGGPSLG 686

Query: 224 VDLDIPESVGVSVSLPTSSLKLMDMDTGRRGKRKI 259
           V+LDIPES+GVSVSLPTSSLKLMDMDTGRRGKRK+
Sbjct: 687 VNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 721

[Close]

BLAST of Spg005910 vs. NCBI nr
Match: KAG6607383.1 (Sister chromatid cohesion protein SCC4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 393.3 bits (1009), Expect = 1.6e-105
Identity = 203/215 (94.42%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 44  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 103
           ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN
Sbjct: 507 TQALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 566

Query: 104 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 163
           LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE
Sbjct: 567 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 626

Query: 164 KGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALG 223
           KGNEMEN EYQ KKADDLQKRLVDAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGP+LG
Sbjct: 627 KGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQQLKEVDMKRAIGGPSLG 686

Query: 224 VDLDIPESVGVSVSLPTSSLKLMDMDTGRRGKRKI 259
           V+LDIPES+GVSVSLPTSSLKLMDMDTGRRGKRK+
Sbjct: 687 VNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 721

[Close]

BLAST of Spg005910 vs. NCBI nr
Match: KAG7037052.1 (hypothetical protein SDJN02_00673, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 393.3 bits (1009), Expect = 1.6e-105
Identity = 203/215 (94.42%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 44  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 103
           ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN
Sbjct: 507 TQALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 566

Query: 104 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 163
           LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE
Sbjct: 567 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 626

Query: 164 KGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALG 223
           KGNEMEN EYQ KKADDLQKRLVDAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGP+LG
Sbjct: 627 KGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQQLKEVDMKRAIGGPSLG 686

Query: 224 VDLDIPESVGVSVSLPTSSLKLMDMDTGRRGKRKI 259
           V+LDIPES+GVSVSLPTSSLKLMDMDTGRRGKRK+
Sbjct: 687 VNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 721

[Close]

BLAST of Spg005910 vs. NCBI nr
Match: XP_023524546.1 (sister chromatid cohesion protein SCC4-like, partial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 393.3 bits (1009), Expect = 1.6e-105
Identity = 203/215 (94.42%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 44  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 103
           ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN
Sbjct: 449 TQALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 508

Query: 104 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 163
           LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE
Sbjct: 509 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 568

Query: 164 KGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALG 223
           KGNEMEN EYQ KKADDLQKRLVDAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGP+LG
Sbjct: 569 KGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQQLKEVDMKRAIGGPSLG 628

Query: 224 VDLDIPESVGVSVSLPTSSLKLMDMDTGRRGKRKI 259
           V+LDIPES+GVSVSLPTSSLKLMDMDTGRRGKRK+
Sbjct: 629 VNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 663

[Close]

BLAST of Spg005910 vs. ExPASy Swiss-Prot
Match: Q9FGN7 (Sister chromatid cohesion protein SCC4 OS=Arabidopsis thaliana OX=3702 GN=SCC4 PE=1 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.8e-71
Identity = 144/219 (65.75%), Postives = 178/219 (81.28%), Query Frame = 0


Query: 44  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 103
           S+ALDLIGP+  M +S  GVRE+ S+LFAYGLLLMKQ DLQEARNRLAKGLQ+ HNH+GN
Sbjct: 508 SKALDLIGPLNGMTNSLSGVREEASILFAYGLLLMKQRDLQEARNRLAKGLQIAHNHMGN 567

Query: 104 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 163
           LQLVAQYLT+LG+LAL+LHDTVQAREILRSSLTLAKKLYDIPTQ+WVLS+ T LYQ+LGE
Sbjct: 568 LQLVAQYLTLLGNLALSLHDTVQAREILRSSLTLAKKLYDIPTQLWVLSIFTALYQQLGE 627

Query: 164 KGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALG 223
           KGNEMEN E++ KK D+LQ RL +A  SIHHIEL+ K R+E+ Q+     ++++   A  
Sbjct: 628 KGNEMENEEFRKKKWDELQSRLAEARGSIHHIELVAKARIELYQIDNNPQEQSLVASAQS 687

Query: 224 V--DLDIPESVGVSVSLPT-SSLKLMDMDTGRR-GKRKI 259
           +  +LDIPESVG+    P  SS +L+ +DTG+R GKR++
Sbjct: 688 MQGNLDIPESVGIEGPSPAPSSSRLVGLDTGKRWGKRRM 726

[Close]

BLAST of Spg005910 vs. ExPASy TrEMBL
Match: A0A6J1DVU1 (sister chromatid cohesion protein SCC4 OS=Momordica charantia OX=3673 GN=LOC111024925 PE=3 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 2.1e-106
Identity = 205/215 (95.35%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 44  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 103
           ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN
Sbjct: 507 TQALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 566

Query: 104 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 163
           LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE
Sbjct: 567 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 626

Query: 164 KGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALG 223
           KGNEMEN EYQ KKADDLQKRL DAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGP+LG
Sbjct: 627 KGNEMENAEYQSKKADDLQKRLADAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPSLG 686

Query: 224 VDLDIPESVGVSVSLPTSSLKLMDMDTGRRGKRKI 259
           V+LDIPESVGVSVSLPTSSLKL+D+DTGRRGKRK+
Sbjct: 687 VNLDIPESVGVSVSLPTSSLKLVDVDTGRRGKRKL 721

[Close]

BLAST of Spg005910 vs. ExPASy TrEMBL
Match: A0A6J1GBA4 (sister chromatid cohesion protein SCC4 OS=Cucurbita moschata OX=3662 GN=LOC111452599 PE=3 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 8.0e-106
Identity = 203/215 (94.42%), Postives = 212/215 (98.60%), Query Frame = 0


Query: 44  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 103
           ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN
Sbjct: 507 TQALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 566

Query: 104 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 163
           LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE
Sbjct: 567 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 626

Query: 164 KGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALG 223
           KGNEMEN EYQ KKADDLQKRLVDAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGP+LG
Sbjct: 627 KGNEMENAEYQSKKADDLQKRLVDAHSSIHHIDLIEKVRREIQQLKEVDMKRAIGGPSLG 686

Query: 224 VDLDIPESVGVSVSLPTSSLKLMDMDTGRRGKRKI 259
           V+LDIPES+GVSVSLPTSSLKLMDMDTGRRGKRK+
Sbjct: 687 VNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 721

[Close]

BLAST of Spg005910 vs. ExPASy TrEMBL
Match: A0A6J1KHQ8 (sister chromatid cohesion protein SCC4 OS=Cucurbita maxima OX=3661 GN=LOC111493351 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.3e-105
Identity = 202/215 (93.95%), Postives = 211/215 (98.14%), Query Frame = 0


Query: 44  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 103
           ++ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN
Sbjct: 507 TQALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 566

Query: 104 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 163
           LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE
Sbjct: 567 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 626

Query: 164 KGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALG 223
           KGNEMEN EYQ KK DDLQKRLVDAHSSIHHI+LI+KVR EIQQLKEVD+KRAIGGP+LG
Sbjct: 627 KGNEMENAEYQSKKTDDLQKRLVDAHSSIHHIDLIEKVRREIQQLKEVDMKRAIGGPSLG 686

Query: 224 VDLDIPESVGVSVSLPTSSLKLMDMDTGRRGKRKI 259
           V+LDIPES+GVSVSLPTSSLKLMDMDTGRRGKRK+
Sbjct: 687 VNLDIPESIGVSVSLPTSSLKLMDMDTGRRGKRKL 721

[Close]

BLAST of Spg005910 vs. ExPASy TrEMBL
Match: A0A5D3CHS2 (MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00010 PE=3 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 9.4e-99
Identity = 198/213 (92.96%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 46  ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQ 105
           ALDLIGPVY MMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQ
Sbjct: 498 ALDLIGPVYSMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQ 557

Query: 106 LVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKG 165
           LVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKG
Sbjct: 558 LVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKG 617

Query: 166 NEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVD 225
           NEMEN EYQCKKADDLQ+RLVDAHSSIHHIELIDKVRLEIQQLK VDIKRA G  +LGVD
Sbjct: 618 NEMENAEYQCKKADDLQRRLVDAHSSIHHIELIDKVRLEIQQLKGVDIKRA-GSISLGVD 677

Query: 226 LDIPESVGVSVSLPTSSLKLMDMDTGRRGKRKI 259
           LDIP S+G SVS  TSSLKLMD+D+GRRGKRKI
Sbjct: 678 LDIPGSIGASVS--TSSLKLMDIDSGRRGKRKI 707

[Close]

BLAST of Spg005910 vs. ExPASy TrEMBL
Match: A0A5A7UEF7 (MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G00010 PE=3 SV=1)

HSP 1 Score: 369.8 bits (948), Expect = 9.4e-99
Identity = 198/213 (92.96%), Postives = 203/213 (95.31%), Query Frame = 0


Query: 46  ALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQ 105
           ALDLIGPVY MMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQ
Sbjct: 499 ALDLIGPVYSMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGNLQ 558

Query: 106 LVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKG 165
           LVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKG
Sbjct: 559 LVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGEKG 618

Query: 166 NEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALGVD 225
           NEMEN EYQCKKADDLQ+RLVDAHSSIHHIELIDKVRLEIQQLK VDIKRA G  +LGVD
Sbjct: 619 NEMENAEYQCKKADDLQRRLVDAHSSIHHIELIDKVRLEIQQLKGVDIKRA-GSISLGVD 678

Query: 226 LDIPESVGVSVSLPTSSLKLMDMDTGRRGKRKI 259
           LDIP S+G SVS  TSSLKLMD+D+GRRGKRKI
Sbjct: 679 LDIPGSIGASVS--TSSLKLMDIDSGRRGKRKI 708

[Close]

BLAST of Spg005910 vs. TAIR 10
Match: AT5G51340.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 270.0 bits (689), Expect = 2.0e-72
Identity = 144/219 (65.75%), Postives = 178/219 (81.28%), Query Frame = 0


Query: 44  SEALDLIGPVYRMMDSFVGVREKTSVLFAYGLLLMKQHDLQEARNRLAKGLQLTHNHLGN 103
           S+ALDLIGP+  M +S  GVRE+ S+LFAYGLLLMKQ DLQEARNRLAKGLQ+ HNH+GN
Sbjct: 508 SKALDLIGPLNGMTNSLSGVREEASILFAYGLLLMKQRDLQEARNRLAKGLQIAHNHMGN 567

Query: 104 LQLVAQYLTILGSLALALHDTVQAREILRSSLTLAKKLYDIPTQIWVLSVLTTLYQELGE 163
           LQLVAQYLT+LG+LAL+LHDTVQAREILRSSLTLAKKLYDIPTQ+WVLS+ T LYQ+LGE
Sbjct: 568 LQLVAQYLTLLGNLALSLHDTVQAREILRSSLTLAKKLYDIPTQLWVLSIFTALYQQLGE 627

Query: 164 KGNEMENTEYQCKKADDLQKRLVDAHSSIHHIELIDKVRLEIQQLKEVDIKRAIGGPALG 223
           KGNEMEN E++ KK D+LQ RL +A  SIHHIEL+ K R+E+ Q+     ++++   A  
Sbjct: 628 KGNEMENEEFRKKKWDELQSRLAEARGSIHHIELVAKARIELYQIDNNPQEQSLVASAQS 687

Query: 224 V--DLDIPESVGVSVSLPT-SSLKLMDMDTGRR-GKRKI 259
           +  +LDIPESVG+    P  SS +L+ +DTG+R GKR++
Sbjct: 688 MQGNLDIPESVGIEGPSPAPSSSRLVGLDTGKRWGKRRM 726

The following BLAST results are available for this feature:

BLAST of Spg005910 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158435.1	4.3e-106	95.35	sister chromatid cohesion protein SCC4 [Momordica charantia]	[more]
XP_023521217.1	1.6e-105	94.42	sister chromatid cohesion protein SCC4 isoform X1 [Cucurbita pepo subsp. pepo] >...	[more]
KAG6607383.1	1.6e-105	94.42	Sister chromatid cohesion protein SCC4, partial [Cucurbita argyrosperma subsp. s...	[more]
KAG7037052.1	1.6e-105	94.42	hypothetical protein SDJN02_00673, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023524546.1	1.6e-105	94.42	sister chromatid cohesion protein SCC4-like, partial [Cucurbita pepo subsp. pepo...	[more]

BLAST of Spg005910 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGN7	2.8e-71	65.75	Sister chromatid cohesion protein SCC4 OS=Arabidopsis thaliana OX=3702 GN=SCC4 P...	[more]

BLAST of Spg005910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVU1	2.1e-106	95.35	sister chromatid cohesion protein SCC4 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1GBA4	8.0e-106	94.42	sister chromatid cohesion protein SCC4 OS=Cucurbita moschata OX=3662 GN=LOC11145...	[more]
A0A6J1KHQ8	2.3e-105	93.95	sister chromatid cohesion protein SCC4 OS=Cucurbita maxima OX=3661 GN=LOC1114933...	[more]
A0A5D3CHS2	9.4e-99	92.96	MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7UEF7	9.4e-99	92.96	MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Spg005910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51340.1	2.0e-72	65.75	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 53..205 e-value: 4.3E-9 score: 37.5
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 68..188
IPR019440	Chromatid cohesion factor MAU2	PANTHER	PTHR21394	UNCHARACTERIZED	coord: 43..200

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005910.1	Spg005910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007064	mitotic sister chromatid cohesion
molecular_function	GO:0005515	protein binding