Spg005883 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005883
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	zf-RVT domain-containing protein
Location	scaffold11: 130634 .. 133004 (+)
RNA-Seq Expression	Spg005883
Synteny	Spg005883

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATAAAACCACTAGTAGGCTGATATGGAAGCATAAAAGCCCTAAGAAGGTGAAGGTGTTCCGATGGTGTCTTGCCTATAGAAGTCTTAATACTGATGAAAAGCTTCAAAAGAAATTCAGCCATTGGTCCCTTTTCCCCTCAGCCTGCAGGATGTGTGTGAAAGCAGCAGAAAATTTAGACCACCTTTTTTTGCATTGCGAGTTCGCTAGTAAAGCTTGGAGTTTTGTTGCTAATCTTCTGGGTATTTCGTTTTGTGTTCCTAAGAAGATCGATGATTGGCTTTATGAAGGCTTGATAGCTTGGAACTTCAAGAGGAAGGCTAGGATTATGGCTCGTTGTGTTTTTAGGGCTACCATTTGGCTCATATGGCGAGAAAGAAATGCTAGAACGTTCGAAGACAAAGTTGGGAACCTTGATTCTTTTTGTGACAATGTACAAAATACAGCGTCTTGGTGGATATCCCTTCACAGGAATTCTTTTTGTAATTACAGCTTGTTAATGATAGTTAGTGATTGGAAAGATCTGCTGAATTAGTTTTTGGGCAAGGGCTCCCTCCGCCCTTGGCCCTAGGCTGTACGCCTCTTTTTGTGGTTAATATATCTCTTTGATGTTTCTTGTCAAAAAAAAAAAAAGCATGAGATACTGTTGTCAATTGGCTATGTTGCATGTGAGTCATGTTTGCATAGTGTGTGTCCCCGATGCGGAGCATGACGCGTAAATCATGTGCTAGGTGTGTGTGCGGAGCGTGAGGCGGAAATCACGTGTGAGTGGCACTGCGCATGGCGCGTAATTCATGTGTTGGGTGGGTTTGAGGAGCGTGACGCATAAATCACGTGTGAGTGTGCGGGCATAGCGCGAAAACCATGTGAGGGTGCATACTGCATAGCATGATGCGTGGATTCATGTTGTCGTCCCATTTTTGCATGAAGCATGTGTTGACATTGTTATTTTCATGTTTAAGAGCATGTTGGATTGTTTATCGCTTTACAAGCATGATGTGTGTGGATAACATGTTGATGTGGTTGCCTGTTGTTTGGTGGCTCATCGGGTGTGAGCTACTTACCAGTACTGTGGTTGTACTGATACCCCTCCCCTTTATTCCCCCCAACATTTTCAGATTATGCAGGTGATGAGCTTTATGTGCCCGGTGATGAAGATGAGGAGGTTCATGAGGGAAGACTACAGGGGTCCATTTATTCGTTTATATTGCTGTTGGATAGATTAGTTCTTACTTAGTTGTTGATAGGTTGAATGTTTATCTTGCATATAGGTTGGATTAGTTTTTAGTTGTCAAACTTTTGTAGATTTTCATGCTTCCGCTAGGATGTAAATATGTTATGTTAATGATTAATAAAGTCGAACTGTTTCTAGAAAGTTAAGAGCATGTTTGCACTAGAAGAATTTTGGTTCTATTGTTGGTTGAAGATACGAGATTTGACTCGTATTTTATTATGAAGTTGTTTCTGTGGAGTTGTGGGGTAGAATGGATTAATATAGAAGTGTTATTTTGTGTTTATCAGGTGATAATTTTTTTTTTTGGTTTCGTCCTATGTATGTCGTTATGCTGCCGAAATTTTCAGAGTTCTCGGTTAGTTTGAATAGGAGTTTAGTAATGTCACTAGGTTAGATAATAATAAAACCTGGGGCGTTACATTAACCCAAGGGTAACCTTTCAAATGTCTAGTAATCAATAACCCAAAGGCTTTTTCAGATGTGAACTTGGTTCAGGATACTTTTAATTCCGCTTTAATTGGAAATTATTCTTTGTCTGACTATTTGGACTTCGTTATTCCATCAAGTGTTAAAGAAGTGCATGATAATTTCTATAAATCTTATTCCAATATTACGTGCGAAAGAAAGGGTCAAGTGTGGAAGGTGATGATTTAAAGGTTAATGCTGATGTTTTGGAAGAAGTTGTCTCTAAGGTATTGGCTCCTCAAGAATCTATATTAAATCAGGATTTTTCAAAGGTAGTAGACAAGTAAAATGATCTTGCAATAGTTGTAATATCGGGCTGGAAGGTGTGCTTTTCACAAGAGTTTTTTTTCCCTCTTCTAAAGCTTGTTTGGCGACAAAGGCATCATCACATTGTGGTATTGAAAATTCAGATGATGAGTCTGAGGTTAGTATGAGCAGTGAAGAGATTGATTTTCCTCTGGAAAATCTTTTGAATGCTGATAGTTGTGATATTTTGGTAAATGATGATTTGAATTTGCTCTTTAAATCTCCATTAAAATCTAATGCTTCAAGCAAGAAGATTGTGGATGACTTTAAGCCTTTAATTCCAATCGCTTCAGATAATTTAGATACTTTTTCTGCACTTATTAAAGCCAATGGTCGTTCAAGCAGATTCTGCCATCCTCATTGA

mRNA sequence

ATGAATAAAACCACTAGTAGGCTGATATGGAAGCATAAAAGCCCTAAGAAGGTGAAGGTGTTCCGATGGTGTCTTGCCTATAGAAGTCTTAATACTGATGAAAAGCTTCAAAAGAAATTCAGCCATTGGTCCCTTTTCCCCTCAGCCTGCAGGATGTGTGTGAAAGCAGCAGAAAATTTAGACCACCTTTTTTTGCATTGCGAGTTCGCTAGTAAAGCTTGGAGTTTTGTTGCTAATCTTCTGGGTATTTCGTTTTGTGTTCCTAAGAAGATCGATGATTGGCTTTATGAAGGCTTGATAGCTTGGAACTTCAAGAGGAAGGCTAGGATTATGGCTCGTTGTGTTTTTAGGGCTACCATTTGGCTCATATGGCGAGAAAGAAATGCTAGAACGTTCGAAGACAAAGTTGGGAACCTTGATTCTTTTTGTGTGTGTGCGGAGCGTGAGGCGGAAATCACGTGTGATGAGCTTTATGTGCCCGGTGATGAAGATGAGGAGGTTCATGAGGGAAGACTACAGGGGTCCATTTATTCGTTTATATTGCTGTTGGATAGATTAAAAGGGTCAAGTGTGGAAGGTGATGATTTAAAGGTTAATGCTGATGTTTTGGAAGAAGTTGTCTCTAAGGCATCATCACATTGTGGTATTGAAAATTCAGATGATGAGTCTGAGGTTAGTATGAGCAGTGAAGAGATTGATTTTCCTCTGGAAAATCTTTTGAATGCTGATAGTTGTGATATTTTGGTAAATGATGATTTGAATTTGCTCTTTAAATCTCCATTAAAATCTAATGCTTCAAGCAAGAAGATTGTGGATGACTTTAAGCCTTTAATTCCAATCGCTTCAGATAATTTAGATACTTTTTCTGCACTTATTAAAGCCAATGGTCGTTCAAGCAGATTCTGCCATCCTCATTGA

Coding sequence (CDS)

ATGAATAAAACCACTAGTAGGCTGATATGGAAGCATAAAAGCCCTAAGAAGGTGAAGGTGTTCCGATGGTGTCTTGCCTATAGAAGTCTTAATACTGATGAAAAGCTTCAAAAGAAATTCAGCCATTGGTCCCTTTTCCCCTCAGCCTGCAGGATGTGTGTGAAAGCAGCAGAAAATTTAGACCACCTTTTTTTGCATTGCGAGTTCGCTAGTAAAGCTTGGAGTTTTGTTGCTAATCTTCTGGGTATTTCGTTTTGTGTTCCTAAGAAGATCGATGATTGGCTTTATGAAGGCTTGATAGCTTGGAACTTCAAGAGGAAGGCTAGGATTATGGCTCGTTGTGTTTTTAGGGCTACCATTTGGCTCATATGGCGAGAAAGAAATGCTAGAACGTTCGAAGACAAAGTTGGGAACCTTGATTCTTTTTGTGTGTGTGCGGAGCGTGAGGCGGAAATCACGTGTGATGAGCTTTATGTGCCCGGTGATGAAGATGAGGAGGTTCATGAGGGAAGACTACAGGGGTCCATTTATTCGTTTATATTGCTGTTGGATAGATTAAAAGGGTCAAGTGTGGAAGGTGATGATTTAAAGGTTAATGCTGATGTTTTGGAAGAAGTTGTCTCTAAGGCATCATCACATTGTGGTATTGAAAATTCAGATGATGAGTCTGAGGTTAGTATGAGCAGTGAAGAGATTGATTTTCCTCTGGAAAATCTTTTGAATGCTGATAGTTGTGATATTTTGGTAAATGATGATTTGAATTTGCTCTTTAAATCTCCATTAAAATCTAATGCTTCAAGCAAGAAGATTGTGGATGACTTTAAGCCTTTAATTCCAATCGCTTCAGATAATTTAGATACTTTTTCTGCACTTATTAAAGCCAATGGTCGTTCAAGCAGATTCTGCCATCCTCATTGA

Protein sequence

MNKTTSRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFKRKARIMARCVFRATIWLIWRERNARTFEDKVGNLDSFCVCAEREAEITCDELYVPGDEDEEVHEGRLQGSIYSFILLLDRLKGSSVEGDDLKVNADVLEEVVSKASSHCGIENSDDESEVSMSSEEIDFPLENLLNADSCDILVNDDLNLLFKSPLKSNASSKKIVDDFKPLIPIASDNLDTFSALIKANGRSSRFCHPH

Homology

[Close]

BLAST of Spg005883 vs. NCBI nr
Match: TYK31299.1 (protein FAM91A1 [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 1.1e-23
Identity = 58/107 (54.21%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 2   NKTTSRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLD 61
           N +T  LIWK K  KKVK F W LAYRSLN   KLQ+KF + SL PS C +C+K AE  D
Sbjct: 224 NFSTVNLIWKLKISKKVKFFLWSLAYRSLNIQNKLQRKFPNGSLSPSICYLCLKEAEAFD 283

Query: 62  HLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFKRKA 109
           HLFLHC+FA K W+ + +L  +  C+PKKIDD + +GL   +F  KA
Sbjct: 284 HLFLHCDFAFKGWNRIFDLFALDDCLPKKIDDGMKDGLTGGSFGGKA 330

[Close]

BLAST of Spg005883 vs. NCBI nr
Match: RVW52490.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 112.5 bits (280), Expect = 6.6e-21
Identity = 51/145 (35.17%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 6   SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFL 65
           ++ +W  + P KVK F W +A++ LNT++ LQ +  H +L P+ C++C+K  E +DHLFL
Sbjct: 291 TKFVWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFL 350

Query: 66  HCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFKRKARIMARCVFRATIWLIWR 125
           HC      W  +  L  + +  P+ I D  +     +   +K  ++ +    A +W++WR
Sbjct: 351 HCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKKGVVLWQDACIALMWVVWR 410

Query: 126 ERNARTFEDKVGN----LDSFCVCA 147
           ERNAR FEDK  N     DS C  A
Sbjct: 411 ERNARIFEDKARNSGFLWDSICFLA 435

[Close]

BLAST of Spg005883 vs. NCBI nr
Match: RVW20049.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-20
Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 6    SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFL 65
            ++ +W  + P KVK F W +A++ LNT++ LQ +  H +L P+ C++C+K  E +DHLFL
Sbjct: 1746 TKFVWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFL 1805

Query: 66   HCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFKRKARIMARCVFRATIWLIWR 125
            HC      W  +  L  + +  P+ I D  +     +   ++  ++ +    A +W++WR
Sbjct: 1806 HCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWR 1865

Query: 126  ERNARTFEDKVGN----LDSFCVCA 147
            ERNAR FEDK  N     DS C  A
Sbjct: 1866 ERNARIFEDKARNSGCLWDSICFLA 1890

[Close]

BLAST of Spg005883 vs. NCBI nr
Match: CAN61757.1 (hypothetical protein VITISV_030741 [Vitis vinifera])

HSP 1 Score: 111.3 bits (277), Expect = 1.5e-20
Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 6    SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFL 65
            ++ +W  + P KVK F W +A++ LNT++ LQ +  H +L P+ C++C+K  E +DHLFL
Sbjct: 1135 TKFVWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFL 1194

Query: 66   HCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFKRKARIMARCVFRATIWLIWR 125
            HC      W  +  L  + +  P+ I D  +     +   ++  ++ +    A +W++WR
Sbjct: 1195 HCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWR 1254

Query: 126  ERNARTFEDKVGN----LDSFCVCA 147
            ERNAR FEDK  N     DS C  A
Sbjct: 1255 ERNARIFEDKARNSGCLWDSICFLA 1279

[Close]

BLAST of Spg005883 vs. NCBI nr
Match: RVW98432.1 (Cation-chloride cotransporter 1 [Vitis vinifera])

HSP 1 Score: 110.2 bits (274), Expect = 3.3e-20
Identity = 48/136 (35.29%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 6   SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFL 65
           S+ +WK + P KVK F W +A++ +NT++ LQ +  H +L P  C++C+   E+ DHLFL
Sbjct: 397 SKFVWKSQVPFKVKTFVWLVAHKKVNTNDLLQLRRPHKALSPDICKLCMGQGESADHLFL 456

Query: 66  HCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFKRKARIMARCVFRATIWLIWR 125
           HC      W  +  L  + +  PK I D ++     +   ++  ++ +    A IW++WR
Sbjct: 457 HCSVTLGLWHRLFQLAKMDWIPPKNISDMMFINYKGFGKSKRGLVLWQNACIALIWVVWR 516

Query: 126 ERNARTFEDKVGNLDS 142
           ERNAR FEDK  N ++
Sbjct: 517 ERNARIFEDKARNSEN 532

[Close]

BLAST of Spg005883 vs. ExPASy TrEMBL
Match: A0A5D3E632 (Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005970 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.3e-24
Identity = 58/107 (54.21%), Postives = 72/107 (67.29%), Query Frame = 0


Query: 2   NKTTSRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLD 61
           N +T  LIWK K  KKVK F W LAYRSLN   KLQ+KF + SL PS C +C+K AE  D
Sbjct: 224 NFSTVNLIWKLKISKKVKFFLWSLAYRSLNIQNKLQRKFPNGSLSPSICYLCLKEAEAFD 283

Query: 62  HLFLHCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFKRKA 109
           HLFLHC+FA K W+ + +L  +  C+PKKIDD + +GL   +F  KA
Sbjct: 284 HLFLHCDFAFKGWNRIFDLFALDDCLPKKIDDGMKDGLTGGSFGGKA 330

[Close]

BLAST of Spg005883 vs. ExPASy TrEMBL
Match: A0A438EXL3 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_220 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.2e-21
Identity = 51/145 (35.17%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 6   SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFL 65
           ++ +W  + P KVK F W +A++ LNT++ LQ +  H +L P+ C++C+K  E +DHLFL
Sbjct: 291 TKFVWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFL 350

Query: 66  HCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFKRKARIMARCVFRATIWLIWR 125
           HC      W  +  L  + +  P+ I D  +     +   +K  ++ +    A +W++WR
Sbjct: 351 HCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKKGVVLWQDACIALMWVVWR 410

Query: 126 ERNARTFEDKVGN----LDSFCVCA 147
           ERNAR FEDK  N     DS C  A
Sbjct: 411 ERNARIFEDKARNSGFLWDSICFLA 435

[Close]

BLAST of Spg005883 vs. ExPASy TrEMBL
Match: A5BTG1 (zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_030741 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.1e-21
Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 6    SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFL 65
            ++ +W  + P KVK F W +A++ LNT++ LQ +  H +L P+ C++C+K  E +DHLFL
Sbjct: 1135 TKFVWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFL 1194

Query: 66   HCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFKRKARIMARCVFRATIWLIWR 125
            HC      W  +  L  + +  P+ I D  +     +   ++  ++ +    A +W++WR
Sbjct: 1195 HCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWR 1254

Query: 126  ERNARTFEDKVGN----LDSFCVCA 147
            ERNAR FEDK  N     DS C  A
Sbjct: 1255 ERNARIFEDKARNSGCLWDSICFLA 1279

[Close]

BLAST of Spg005883 vs. ExPASy TrEMBL
Match: A0A438CA35 (Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX2_201 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.1e-21
Identity = 50/145 (34.48%), Postives = 80/145 (55.17%), Query Frame = 0


Query: 6    SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFL 65
            ++ +W  + P KVK F W +A++ LNT++ LQ +  H +L P+ C++C+K  E +DHLFL
Sbjct: 1746 TKFVWNSQVPFKVKSFVWLVAHKKLNTNDLLQLRRPHKALSPNICKLCMKHGETVDHLFL 1805

Query: 66   HCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFKRKARIMARCVFRATIWLIWR 125
            HC      W  +  L  + +  P+ I D  +     +   ++  ++ +    A +W++WR
Sbjct: 1806 HCSLTKGLWHRLFQLAKMDWVSPRSISDMFFTNFNGFGSSKRGVVLWQDACIALMWVVWR 1865

Query: 126  ERNARTFEDKVGN----LDSFCVCA 147
            ERNAR FEDK  N     DS C  A
Sbjct: 1866 ERNARIFEDKARNSGCLWDSICFLA 1890

[Close]

BLAST of Spg005883 vs. ExPASy TrEMBL
Match: A0A438DVL1 (Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_817 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 1.6e-20
Identity = 48/136 (35.29%), Postives = 78/136 (57.35%), Query Frame = 0


Query: 6   SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSLFPSACRMCVKAAENLDHLFL 65
           S+ +WK + P KVK F W +A++ +NT++ LQ +  H +L P  C++C+   E+ DHLFL
Sbjct: 231 SKFVWKSQVPFKVKTFVWLVAHKKVNTNDLLQLRRPHKALSPDICKLCMGQGESADHLFL 290

Query: 66  HCEFASKAWSFVANLLGISFCVPKKIDDWLYEGLIAWNFKRKARIMARCVFRATIWLIWR 125
           HC      W  +  L  + +  PK I D ++     +   ++  ++ +    A IW++WR
Sbjct: 291 HCSVTLGLWHRLFQLAKMDWIPPKNISDMMFINYKGFGKSKRGLVLWQNACIALIWVVWR 350

Query: 126 ERNARTFEDKVGNLDS 142
           ERNAR FEDK  N ++
Sbjct: 351 ERNARIFEDKARNSEN 366

[Close]

BLAST of Spg005883 vs. TAIR 10
Match: AT1G33710.1 (RNA-directed DNA polymerase (reverse transcriptase)-related family protein )

HSP 1 Score: 49.7 bits (117), Expect = 4.9e-06
Identity = 32/127 (25.20%), Postives = 55/127 (43.31%), Query Frame = 0


Query: 6   SRLIWKHKSPKKVKVFRWCLAYRSLNTDEKLQKKFSHWSL-FPSACRMCVKAAENLDHLF 65
           ++ +W   +  K     W      L T  +L    + W +   + C +C    E+ DHLF
Sbjct: 49  AKTVWFKGATPKHAFHMWVTNLDRLPTKTRL----ASWGMQLQTTCGLCSLDIEDRDHLF 108

Query: 66  LHCEFASKAWSFVA---NLLGISFCVPKKIDDWLYEGLIAWNFKRKARIMARCVFRATIW 125
           L CEFA   W  V+    L   SF V   + DW  +       +R    + + + ++ ++
Sbjct: 109 LTCEFACFLWHTVSVRLELPAFSFVVWNDLMDWTLQ-----RNRRSPPTLRKLIVQSVLY 166

Query: 126 LIWRERN 129
            IW++RN
Sbjct: 169 AIWKQRN 166

[Close]

BLAST of Spg005883 vs. TAIR 10
Match: AT1G45063.1 (copper ion binding;electron carriers )

HSP 1 Score: 49.7 bits (117), Expect = 4.9e-06
Identity = 28/101 (27.72%), Postives = 47/101 (46.53%), Query Frame = 0


Query: 39  KFSHWSL-FPSACRMCVKAAENLDHLFLHCEFASKAWSFVANLLGISFCVPKKIDD---W 98
           +F  W +  PS C +C    E   H+F  C F+ + WSF  +   ++   P+   D   W
Sbjct: 272 RFISWGIQVPSLCLLCNALDETRQHVFFDCPFSHEVWSFFCSNARVT--PPRMFKDSARW 331

Query: 99  LYEGLIAWNFKRKARIMARCVFRATIWLIWRERNARTFEDK 136
           L          +K   + +  ++A+++ IWRERN R   +K
Sbjct: 332 LRHPC----RDKKVAFILKLAYQASVYHIWRERNIRLNSNK 366

The following BLAST results are available for this feature:

BLAST of Spg005883 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK31299.1	1.1e-23	54.21	protein FAM91A1 [Cucumis melo var. makuwa]	[more]
RVW52490.1	6.6e-21	35.17	putative ribonuclease H protein [Vitis vinifera]	[more]
RVW20049.1	1.5e-20	34.48	Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera]	[more]
CAN61757.1	1.5e-20	34.48	hypothetical protein VITISV_030741 [Vitis vinifera]	[more]
RVW98432.1	3.3e-20	35.29	Cation-chloride cotransporter 1 [Vitis vinifera]	[more]

BLAST of Spg005883 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005883 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E632	5.3e-24	54.21	Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0059...	[more]
A0A438EXL3	3.2e-21	35.17	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_220 P...	[more]
A5BTG1	7.1e-21	34.48	zf-RVT domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_030741 PE=...	[more]
A0A438CA35	7.1e-21	34.48	Transposon TX1 uncharacterized 149 kDa protein OS=Vitis vinifera OX=29760 GN=YTX...	[more]
A0A438DVL1	1.6e-20	35.29	Putative ribonuclease H protein OS=Vitis vinifera OX=29760 GN=VvCHDh000004_817 P...	[more]

BLAST of Spg005883 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G33710.1	4.9e-06	25.20	RNA-directed DNA polymerase (reverse transcriptase)-related family protein	[more]
AT1G45063.1	4.9e-06	27.72	copper ion binding;electron carriers	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 5..74 e-value: 1.3E-13 score: 51.5

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005883.1	Spg005883.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009987	cellular process
biological_process	GO:0008152	metabolic process
biological_process	GO:0050789	regulation of biological process
cellular_component	GO:0110165	cellular anatomical entity