Spg005785 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005785
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	sister chromatid cohesion protein SCC4
Location	scaffold11: 43418 .. 47866 (+)
RNA-Seq Expression	Spg005785
Synteny	Spg005785

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAGGCGGTTGCGAGAGAGACGTCGACGATGGTAGGGATAGAGATGAAAAGGAGAAGGAGAAGTGAGAATGAGCGACGACCAAAAGCTTGAAAGAAAGGAGGAGAGAAAGAGATGAGAGATGGAAATAAAAAAAGAGAGGGAGTTGTAGAGGGAGAGAGAGAAGCCGTAAAGGGAGAGAAAGAGTGAAGGAGATGGATGGATTTTGGTTGTCCTTTGTTGGCTGATTGAGAGAAAGAGATTCAGAGAGAGAAAGTGATGTGACCTTTAGGGTTTGTAGGTAAAATTGGCTTTGGGCTTTTGAATATGGGCTTTGGGTCTATTATTAAAGGGTTGAAATAATTGTTTTTGTAGAGTTAATCAGTTCGGTTTTTTTAATTTTTTTAAAGGTTGAACCGCAGACCGAATCGAAAATCTCAATTTTTTTTTTATAATATTAAACCGAGAAACCTAATTTTTTATAAAATTAGACTGAACCAGTTGATTCGGTTCAGTTTTTGCACTCCTTTAATATATATATCTCTTATGTGAATGGAATAAAGCATTTTGATTCTCTCAAACCTTTGGCATTTACATGGTATCAGAGCGGGTCTAGGGCAATTAGGGTTTTGTCTCGTTAGAGATTTGTGAACCTTTTTAGGGTTTGATTTGGAACACCTATTAAGGGTTTTGTTTTGCCTTAAAAGTTTGTCGTCGCCAGAATCCGCCGCTGTCGTCGCCGCCAAGGTCTGTTGCCAGAGGAATTTTTCGTCACCGCCCAACCCAATAGGAAACCCACTCGCCAATCTACTGGTCCTCAAAATCCGAAGTAGAAATTCCCTGCGCGTGTGAGCGCGTGCACTGTCGGTTTTTTCTTCTTTTTTTTCGTGGATTGGCTCACTCTGGTCCCCACTTTCTAGTCGTGTGTTGCTTTGGGTCATATCGGGTTTGTTTGGTTGTGTTTGAAAGTCATAGTTTTTTTGGAATTTTAGGGTTTGTGTGATTCAGATTTCAACTCTATATCTTCTCACGACAGAGCAAATTGTTGATGTACTAACGAAGGGGCTTCCAAAGAAGCAATTGATAAACTAATTTGGCTCTTCTTGCTAAGTGGGGATTGGAGATATTCGAGAGATCCGGATTTGTTGTGGTGTTTAGTTGTTAAAAGCATTCATGGGCAGCATTGTTTTTTTTGGCTCTCTTCCGGTAAGGTTGGCTTGAGTTTTCGAAGTCCTTGGTTTAGCATTTCTAAGTGTTGGGGGAAGTTTATGTCTATTTTCAAGCTTCAATGGGTTTTTGATCAGTCATTCAAAGAAAACGTGCTGAATCTTTTAATTGGTCCAGTAATTCAGTCGGCTTCTATATTATTGTGGTTGATTGGTGTCAAAGCTGTTTTATCAGATTTTTGGTTTGAAAGGAATTTGTGGGTTTTTCATGGCTCTTCTCTTTCTTGGTTGGTTCGTTTTATCTTAGCTCGCCTCAAAGTTTCGTTATGGAGTTCGTTGTCCAAGCTTTATTCAACCTTCTCTATTCAGGATATTTGCCTTAATTGGGATGCTTTCATTTCTCCATCCTAAGTCTTCATTGTTCTTTTATGGGCTGTTTTTGTGTTCCTTTATAGCCGTGTGTTGATCTTTTATTGGTTGTTCTTATCATTATCTTGTTCTTTTATTGGCTGTATTTTCATTTCCTTTATTTTTCGTATCTTTGTATTTTGAGCATTAGTCTCTTTTCATTTCTTCAATGAAAAGTTTGTTTCCTTTTCAAAAGAAAAAAAAAATTGACAAGCTGGCTATGGAAGATATCTTTAAACCAGCTTGAGGGGGAGTGTTGGAATTTCTAGTCTTTAAAATTGTGTAAATATTATTTGTCAATATTTAGTCATTATTGTCTTTATTCTTTCCTTATATTGTAGTGGGTCTTTCTCCTATATAAGAAGACCTAGGTTGCACATATTTGAATAACGAAGAATTATCTTCTAAATTCAAGACATTTGGTTTCTTTTCATTAATCAATTAAAAGTTTGTTTCTTGTTAAAAAACCATTTGACAAAATTCAAAAGGAGAATACTGGATGTTTTCCTCCCTCTCAGTTGATAGTTGCCTCTTTCATCGATATACTTGTATTGTGTTATGTAGGCCTTGGTGCAGATGAAGAATTGGTTCTTGCGCTTTCCTACAATTTTACAGGCATGTGAGAGTATGATTGAGATGCTTAGAGGCCAGTATGCTCATTACGTTGGTTGTTACCATGAAGCAACCTTCCATTATATTGAAGCCGCGAAGGTGTCCATAGTTGCTTGCAATTCTAGTTTTCATGCTCTTGATACTACTTGAGAAGTCACACCGTGGTTATGGTTTGTTATTAGTGTCAAATTTTGTTAATTCAATCTCTTTCTTGATTATGTAGCTTACAGAGAGCAAATCAATTCAAGCAATGTGCCAAGTTTATGCGGCTGTCTCTTATATTTGTATTGGCGATGCGGAATCATCCACACAGGTAACTTGTTCTCCTACTTCAGAATTTATACACAAGATAAAATATGTGTCCACATTTGTTAGGTTCTTTTGTGGCTACTGTTAAAGAGATGAAAATACAAGAAAGACTATAAGAGTGCCTAAAGGCTAACAAAAAAACCTATAACATGCATAAATGATTGTTCAATGCAAGAATAATTAACACAAGAACTAGAAGAACTTCAAACAACTTTATACCTTCCATGCAAAATATGTCTTCATCCTCAAAGGTTATCTATTAGGTATCCAACCTCCTTAACCTGCAAGAAACTTAAGAAAACACACAAACAACACCAAAACAGCACGAAAATGGAGAGAAATAGACCCAACTCTGCTGTATTGAGGGGTTCTTCAATACACAGAGGGGTTATTAGCCGCTTGATATTGATAAACCAAAATAAGAACAAGAACAAGGATTCCCAGCATTCGAGAGGCTGGTTCTCTCCCTCTCAACCTAAGACAAAATGATTCCTGCCCTCCCAACATTCCCTGCATCCGTATACATCATTCCCTCACTCCCACACTCCCTGTGGTCCCCACAGCATCCTCTTCTAACTGTTTCTCTCTTTTCTCTATTTTACCCTTTTTCTTATAAACACGTGTGATAGGAGGCCTAACATTATCCTAATGTGTCCAAGCTCTGTAAAGGAATGTCTTCAAAAGTTAATCTACACTAAGGGAATGTAGCATGGGTTAGGGATTGTTTAGAGGCTATTGGCTCCTGTTTAGGGATGAGGTCCTTTTTTAGGAAGAAAAGGTGCCTATAAGCTTTAATCTAGGCTCGGTTGGTTGAGAAAGTTAGAGGAAGATGTTGTGTGGTTATGGTGGAATCGTTAAAAGGGAGGTGGTCCTCTTTGAACTTTCCAAAGGGAGGAGATAAGGGGTTGTTTTCAATGAGACTCTTTGATCATGCTCCTAGGAGGGTCAACGAAAGGTAGTGGCGAAGTGTCTAATTGCTTGAATCCCCTCAAGAGGCTGACGTCCTCCTTTGTTCAAATGCATTATTTGTTCAAATGGTAACAGGAGAAGGGAAAAAGTATGATGTATCAGAGATTAATGGCGAGGAAGAAAAGAATGTGCTGTTTGAAGTCTCGTATGTTTTACTAGTAAAGGAAAAGGCTAGTGATTTGTGGGTTAAGGTGGGGAAAGGAGTCAAAAGTCGGTTTGGGTTGCATATGTGTGAAACTGTTTTGTGGGAATATGGCAATGATTCCTTTCTTTGTGAGGATAGTCATCATAGGCAAAAAAATATTTGACTTTGGTGGAAGGGTGATTCTCGACTGTGCTTTGAGTTATTTGTGGTGGAATTCTGACAAGGTAGCAAAGGAAAGATGTTTATTGTTTATCAAGGGGTGGGTGAACTTCTTGGATATTCCTCCTCACTTATGGACAGTAGTGTCACTAGAAAGCTAGTTGATTTGTGTGATGGGATAGGAGAGTGAGAAGTGTCGATGTAGGGAGAAGGTTGGAAGGGGGAGATGAGAGGCTTTGTGAAGGGTAGGGAGGATGGTTTTACCCTAAGAGGTTGTTTTTTAAATTGGGAAGGGATTGATTTTCTAGTGGGGTTTGTTTTAGTGGACCTTTTCGGTGCCAAAAACAACTTTCGCTCGAAGAAGGAAGGTGTCATGTCGTTGTAGAGGACATACGATGATAGGCGGCACTGTTCAAAAGGTGACTTGGAGAAAACTCAGCCACACAATGTTATGTCAGGGTTTGGCAGCATTTCAAATTTTGGAGAGGGCTTAATTCAATTCCAGAGGCCCATTCCAGGGAAGTGTCGAAAGGGAAAAGGAGAGTGGACACTGGGCCACCTCAATTGATGGGCCTAAAAACCCTAGTGATAAGCAAAGGACTAGCATTAGTGGGTTGTTTGATGAAAAATCTAGTGGGTTTAGGAAAAGTGAAAAGCAGAGCATGGGGGGGGATATGGAGGAGGGGGTGATTTCGGGTTAG

mRNA sequence

ATGATAGGCGGTTGCGAGAGAGACGTCGACGATGGTAGGGATAGAGATGAAAAGGAGAAGGAGAATTTGTCGTCGCCAGAATCCGCCGCTGTCGTCGCCGCCAAGGCCTTGGTGCAGATGAAGAATTGGTTCTTGCGCTTTCCTACAATTTTACAGGCATGTGAGAGTATGATTGAGATGCTTAGAGGCCAGTATGCTCATTACGTTGGTTGTTACCATGAAGCAACCTTCCATTATATTGAAGCCGCGAAGCTTACAGAGAGCAAATCAATTCAAGCAATGTGCCAAGTTTATGCGGCTGTCTCTTATATTTGTATTGGCGATGCGGAATCATCCACACAGGCTGACGTCCTCCTTTGTTCAAATGCATTATTTGTTCAAATGGTAACAGGAGAAGGGAAAAAGTATGATGTATCAGAGATTAATGGCGAGGAAGAAAAGAATGTGCTGTTTGAAGTCTCGTATGTTTTACTAGTAAAGGAAAAGGCTAGTGATTTGTGGGTTAAGGGAAGTGTCGAAAGGGAAAAGGAGAGTGGACACTGGGCCACCTCAATTGATGGGCCTAAAAACCCTAGTGATAAGCAAAGGACTAGCATTAGTGGGTTGTTTGATGAAAAATCTAGTGGGTTTAGGAAAAGTGAAAAGCAGAGCATGGGGGGGGATATGGAGGAGGGGGTGATTTCGGGTTAG

Coding sequence (CDS)

ATGATAGGCGGTTGCGAGAGAGACGTCGACGATGGTAGGGATAGAGATGAAAAGGAGAAGGAGAATTTGTCGTCGCCAGAATCCGCCGCTGTCGTCGCCGCCAAGGCCTTGGTGCAGATGAAGAATTGGTTCTTGCGCTTTCCTACAATTTTACAGGCATGTGAGAGTATGATTGAGATGCTTAGAGGCCAGTATGCTCATTACGTTGGTTGTTACCATGAAGCAACCTTCCATTATATTGAAGCCGCGAAGCTTACAGAGAGCAAATCAATTCAAGCAATGTGCCAAGTTTATGCGGCTGTCTCTTATATTTGTATTGGCGATGCGGAATCATCCACACAGGCTGACGTCCTCCTTTGTTCAAATGCATTATTTGTTCAAATGGTAACAGGAGAAGGGAAAAAGTATGATGTATCAGAGATTAATGGCGAGGAAGAAAAGAATGTGCTGTTTGAAGTCTCGTATGTTTTACTAGTAAAGGAAAAGGCTAGTGATTTGTGGGTTAAGGGAAGTGTCGAAAGGGAAAAGGAGAGTGGACACTGGGCCACCTCAATTGATGGGCCTAAAAACCCTAGTGATAAGCAAAGGACTAGCATTAGTGGGTTGTTTGATGAAAAATCTAGTGGGTTTAGGAAAAGTGAAAAGCAGAGCATGGGGGGGGATATGGAGGAGGGGGTGATTTCGGGTTAG

Protein sequence

MIGGCERDVDDGRDRDEKEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATFHYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQADVLLCSNALFVQMVTGEGKKYDVSEINGEEEKNVLFEVSYVLLVKEKASDLWVKGSVEREKESGHWATSIDGPKNPSDKQRTSISGLFDEKSSGFRKSEKQSMGGDMEEGVISG

Homology

[Close]

BLAST of Spg005785 vs. NCBI nr
Match: XP_022158435.1 (sister chromatid cohesion protein SCC4 [Momordica charantia])

HSP 1 Score: 167.5 bits (423), Expect = 1.3e-37
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 412 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 471

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA
Sbjct: 472 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 509

[Close]

BLAST of Spg005785 vs. NCBI nr
Match: KAA0052897.1 (MAU2 chromatid cohesion factor-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 164.9 bits (416), Expect = 8.4e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 402 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 461

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 462 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 499

[Close]

BLAST of Spg005785 vs. NCBI nr
Match: XP_031738040.1 (sister chromatid cohesion protein SCC4 isoform X4 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 8.4e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 477 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 536

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 537 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 574

[Close]

BLAST of Spg005785 vs. NCBI nr
Match: XP_031738038.1 (sister chromatid cohesion protein SCC4 isoform X1 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 8.4e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 477 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 536

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 537 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 574

[Close]

BLAST of Spg005785 vs. NCBI nr
Match: XP_031738617.1 (sister chromatid cohesion protein SCC4-like, partial [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 8.4e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 125 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 184

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 185 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 222

[Close]

BLAST of Spg005785 vs. ExPASy Swiss-Prot
Match: Q9FGN7 (Sister chromatid cohesion protein SCC4 OS=Arabidopsis thaliana OX=3702 GN=SCC4 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 5.7e-28
Identity = 65/93 (69.89%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 23  LSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATFHYIEA 82
           L    S  V A +ALV MKNWF RFPTILQA E MIEMLRGQY+H VGCY EA FH IEA
Sbjct: 418 LELTRSDYVEAEEALVDMKNWFTRFPTILQASECMIEMLRGQYSHSVGCYSEAAFHCIEA 477

Query: 83  AKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
            KLTES S+QA CQ +AAVSY+ IGDAESS++A
Sbjct: 478 TKLTESISMQASCQAFAAVSYLTIGDAESSSKA 510

[Close]

BLAST of Spg005785 vs. ExPASy TrEMBL
Match: A0A6J1DVU1 (sister chromatid cohesion protein SCC4 OS=Momordica charantia OX=3673 GN=LOC111024925 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 6.3e-38
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 412 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 471

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA
Sbjct: 472 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 509

[Close]

BLAST of Spg005785 vs. ExPASy TrEMBL
Match: A0A5D3CHS2 (MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00010 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 401 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 460

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 461 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 498

[Close]

BLAST of Spg005785 vs. ExPASy TrEMBL
Match: A0A5A7UEF7 (MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G00010 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 402 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 461

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 462 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 499

[Close]

BLAST of Spg005785 vs. ExPASy TrEMBL
Match: A0A0A0L4R7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000010 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 412 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 471

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 472 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 509

[Close]

BLAST of Spg005785 vs. ExPASy TrEMBL
Match: A0A1S3BJ17 (LOW QUALITY PROTEIN: MAU2 chromatid cohesion factor homolog OS=Cucumis melo OX=3656 GN=LOC103490628 PE=3 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37
Identity = 83/98 (84.69%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 18  KEKENLSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 77
           + K  +    S  V A +ALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF
Sbjct: 412 ENKVAIELTRSEFVEAQEALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATF 471

Query: 78  HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
           HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESST A
Sbjct: 472 HYIEAAKLTESKSIQAMCQVYAAVSYICIGDAESSTLA 509

[Close]

BLAST of Spg005785 vs. TAIR 10
Match: AT5G51340.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 125.9 bits (315), Expect = 4.0e-29
Identity = 65/93 (69.89%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 23  LSSPESAAVVAAKALVQMKNWFLRFPTILQACESMIEMLRGQYAHYVGCYHEATFHYIEA 82
           L    S  V A +ALV MKNWF RFPTILQA E MIEMLRGQY+H VGCY EA FH IEA
Sbjct: 418 LELTRSDYVEAEEALVDMKNWFTRFPTILQASECMIEMLRGQYSHSVGCYSEAAFHCIEA 477

Query: 83  AKLTESKSIQAMCQVYAAVSYICIGDAESSTQA 116
            KLTES S+QA CQ +AAVSY+ IGDAESS++A
Sbjct: 478 TKLTESISMQASCQAFAAVSYLTIGDAESSSKA 510

The following BLAST results are available for this feature:

BLAST of Spg005785 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022158435.1	1.3e-37	85.71	sister chromatid cohesion protein SCC4 [Momordica charantia]	[more]
KAA0052897.1	8.4e-37	84.69	MAU2 chromatid cohesion factor-like protein [Cucumis melo var. makuwa]	[more]
XP_031738040.1	8.4e-37	84.69	sister chromatid cohesion protein SCC4 isoform X4 [Cucumis sativus]	[more]
XP_031738038.1	8.4e-37	84.69	sister chromatid cohesion protein SCC4 isoform X1 [Cucumis sativus]	[more]
XP_031738617.1	8.4e-37	84.69	sister chromatid cohesion protein SCC4-like, partial [Cucumis sativus]	[more]

BLAST of Spg005785 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGN7	5.7e-28	69.89	Sister chromatid cohesion protein SCC4 OS=Arabidopsis thaliana OX=3702 GN=SCC4 P...	[more]

BLAST of Spg005785 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DVU1	6.3e-38	85.71	sister chromatid cohesion protein SCC4 OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A5D3CHS2	4.1e-37	84.69	MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7UEF7	4.1e-37	84.69	MAU2 chromatid cohesion factor-like protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A0A0L4R7	4.1e-37	84.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G000010 PE=3 SV=1	[more]
A0A1S3BJ17	4.1e-37	84.69	LOW QUALITY PROTEIN: MAU2 chromatid cohesion factor homolog OS=Cucumis melo OX=3...	[more]

BLAST of Spg005785 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51340.1	4.0e-29	69.89	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..204
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..229
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
IPR019440	Chromatid cohesion factor MAU2	PANTHER	PTHR21394	UNCHARACTERIZED	coord: 28..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005785.1	Spg005785.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007064	mitotic sister chromatid cohesion