Spg005352 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005352
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Unknown protein
Location	scaffold6: 36039795 .. 36040898 (-)
RNA-Seq Expression	Spg005352
Synteny	Spg005352

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAAAACAAGAGCGAGGAAAGAAAGAGAGAGAGAGAGTGAAGAGGAAATACCCATTACCCCCGAAGTTTCGAAAGTGAAAACTAAGAAGAAAAGAACACCGGAGGAGAAAGAGGCTAAAAGAAGAAGGCGACAACAGAGGGCGGAAGAACAAGAAAAAGTGGCAGAGGATGAGGCTGCTGCAGTGGTTGAAGAAAACCTGGAAGAACTGCAAGAACAGACCCCAGGTGAGACTGATCAAAGACTTACAGATACGGCTCGAGAGGAAAATGTTGAGGAAAATCAAGAACAACAGGCTGAGATGGTGAGAGACGAACAGGTCAACACAGTGTCTGAAAGAGGAAACGAGCAGGACCAAGGAGCTCGTGTTGAGGTAATCATGCCCGAACCACCGAAACGCCGCCGCATAAAAAGGAAGGTCGGTCGTATTCAGGTGATTCGGACTGATACCCCATCACCACCATCGTCAGATTCTGAGAGAGAAAAGGCAGTGCGCGAGGAAAAAGAGAGGAAAGAAGCTGAGGACAAAGAAAGAGAAGAAACAGAGAAGAAGACCGAGGAAGAGCAGTTGCCCAGGCGCAGAGCAGAGAAGGGCAAAAATATTGCTGAAGCATCGGAAGAACACGAGGCGATAGAAGAACAGCAGGTTCCATTTGATCGCTTCGTCAACAATTTTGCCAGAGCAAAATACGCTGAGCTTCTGAAAAGGGATTTCTTGTTCGAGCGCGGTTTCAGTGGTCATCTTCCACAGTTTCTGGGGACCGGTATTGCAGACCACGGCTGGGAGCTGTTTTGTGCGAAGCCTGAATCTGTAAACGCACAGGTGGTGCGTGAATTTTATGCTAACATTGTCAAGGAGGATGGTTTCCAGGTAATTGTCCGAGGAGTTGAGGTGGATTGGAGTCCAAGTGCTATCAATGCACTGTACAACCTTCAGAATTTCCCCCATGCGGCATATAATGAGATGGCTGTGGCGCCATCTGATGAGCAACTAAGTGAGGTAGGAATTGAAGGGGCACAGTGGCAGTTATCCAAGACTCAGAAGAGGACATTCCAGTCGGCTTATTTGAAAAGGGAAGCACACATGGATGGGATTTATTAG

mRNA sequence

ATGGCCAAAACAAGAGCGAGGAAAGAAAGAGAGAGAGAGAGTGAAGAGGAAATACCCATTACCCCCGAAGTTTCGAAAGTGAAAACTAAGAAGAAAAGAACACCGGAGGAGAAAGAGGCTAAAAGAAGAAGGCGACAACAGAGGGCGGAAGAACAAGAAAAAGTGGCAGAGGATGAGGCTGCTGCAGTGGTTGAAGAAAACCTGGAAGAACTGCAAGAACAGACCCCAGGTGAGACTGATCAAAGACTTACAGATACGGCTCGAGAGGAAAATGTTGAGGAAAATCAAGAACAACAGGCTGAGATGGTGAGAGACGAACAGGTCAACACAGTGTCTGAAAGAGGAAACGAGCAGGACCAAGGAGCTCGTGTTGAGGTAATCATGCCCGAACCACCGAAACGCCGCCGCATAAAAAGGAAGGTCGGTCGTATTCAGGTGATTCGGACTGATACCCCATCACCACCATCGTCAGATTCTGAGAGAGAAAAGGCAGTGCGCGAGGAAAAAGAGAGGAAAGAAGCTGAGGACAAAGAAAGAGAAGAAACAGAGAAGAAGACCGAGGAAGAGCAGTTGCCCAGGCGCAGAGCAGAGAAGGGCAAAAATATTGCTGAAGCATCGGAAGAACACGAGGCGATAGAAGAACAGCAGGTTCCATTTGATCGCTTCGTCAACAATTTTGCCAGAGCAAAATACGCTGAGCTTCTGAAAAGGGATTTCTTGTTCGAGCGCGGTTTCAGTGGTCATCTTCCACAGTTTCTGGGGACCGGTATTGCAGACCACGGCTGGGAGCTGTTTTGTGCGAAGCCTGAATCTGTAAACGCACAGGTGGTGCGTGAATTTTATGCTAACATTGTCAAGGAGGATGGTTTCCAGGTAATTGTCCGAGGAGTTGAGGTGGATTGGAGTCCAAGTGCTATCAATGCACTGTACAACCTTCAGAATTTCCCCCATGCGGCATATAATGAGATGGCTGTGGCGCCATCTGATGAGCAACTAAGTGAGGTAGGAATTGAAGGGGCACAGTGGCAGTTATCCAAGACTCAGAAGAGGACATTCCAGTCGGCTTATTTGAAAAGGGAAGCACACATGGATGGGATTTATTAG

Coding sequence (CDS)

ATGGCCAAAACAAGAGCGAGGAAAGAAAGAGAGAGAGAGAGTGAAGAGGAAATACCCATTACCCCCGAAGTTTCGAAAGTGAAAACTAAGAAGAAAAGAACACCGGAGGAGAAAGAGGCTAAAAGAAGAAGGCGACAACAGAGGGCGGAAGAACAAGAAAAAGTGGCAGAGGATGAGGCTGCTGCAGTGGTTGAAGAAAACCTGGAAGAACTGCAAGAACAGACCCCAGGTGAGACTGATCAAAGACTTACAGATACGGCTCGAGAGGAAAATGTTGAGGAAAATCAAGAACAACAGGCTGAGATGGTGAGAGACGAACAGGTCAACACAGTGTCTGAAAGAGGAAACGAGCAGGACCAAGGAGCTCGTGTTGAGGTAATCATGCCCGAACCACCGAAACGCCGCCGCATAAAAAGGAAGGTCGGTCGTATTCAGGTGATTCGGACTGATACCCCATCACCACCATCGTCAGATTCTGAGAGAGAAAAGGCAGTGCGCGAGGAAAAAGAGAGGAAAGAAGCTGAGGACAAAGAAAGAGAAGAAACAGAGAAGAAGACCGAGGAAGAGCAGTTGCCCAGGCGCAGAGCAGAGAAGGGCAAAAATATTGCTGAAGCATCGGAAGAACACGAGGCGATAGAAGAACAGCAGGTTCCATTTGATCGCTTCGTCAACAATTTTGCCAGAGCAAAATACGCTGAGCTTCTGAAAAGGGATTTCTTGTTCGAGCGCGGTTTCAGTGGTCATCTTCCACAGTTTCTGGGGACCGGTATTGCAGACCACGGCTGGGAGCTGTTTTGTGCGAAGCCTGAATCTGTAAACGCACAGGTGGTGCGTGAATTTTATGCTAACATTGTCAAGGAGGATGGTTTCCAGGTAATTGTCCGAGGAGTTGAGGTGGATTGGAGTCCAAGTGCTATCAATGCACTGTACAACCTTCAGAATTTCCCCCATGCGGCATATAATGAGATGGCTGTGGCGCCATCTGATGAGCAACTAAGTGAGGTAGGAATTGAAGGGGCACAGTGGCAGTTATCCAAGACTCAGAAGAGGACATTCCAGTCGGCTTATTTGAAAAGGGAAGCACACATGGATGGGATTTATTAG

Protein sequence

MAKTRARKERERESEEEIPITPEVSKVKTKKKRTPEEKEAKRRRRQQRAEEQEKVAEDEAAAVVEENLEELQEQTPGETDQRLTDTAREENVEENQEQQAEMVRDEQVNTVSERGNEQDQGARVEVIMPEPPKRRRIKRKVGRIQVIRTDTPSPPSSDSEREKAVREEKERKEAEDKEREETEKKTEEEQLPRRRAEKGKNIAEASEEHEAIEEQQVPFDRFVNNFARAKYAELLKRDFLFERGFSGHLPQFLGTGIADHGWELFCAKPESVNAQVVREFYANIVKEDGFQVIVRGVEVDWSPSAINALYNLQNFPHAAYNEMAVAPSDEQLSEVGIEGAQWQLSKTQKRTFQSAYLKREAHMDGIY

Homology

The following BLAST results are available for this feature:

BLAST of Spg005352 vs.


Match Name	E-value	Identity	Description

BLAST of Spg005352 vs.


Match Name	E-value	Identity	Description

BLAST of Spg005352 vs.


Match Name	E-value	Identity	Description

BLAST of Spg005352 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 195..215
None	No IPR available	COILS	Coil	Coil	coord: 157..191
None	No IPR available	COILS	Coil	Coil	coord: 46..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..212
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..112
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005352.1	Spg005352.1	mRNA