Spg005116 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005116
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold11: 12707713 .. 12710949 (+)
RNA-Seq Expression	Spg005116
Synteny	Spg005116

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCACAGCGTCGAGACGCTATGACCTTTTGCCGCCTGAATCAGAAAAGGAAAGGCAGCGTCGAGACGCTCCAAGAGCAGCGTCCCGACGCTGGTCTGCAGATGGCTCTCTTTTGGCTTCTTCTAACTTGAATCTTTTTCGTTCTTTAGCCAATTTTCATGTCCCGAACACATATTTAGCTCCAATTTCCCGATTTAACTCCGGAACATGATTCCTACAAATAGAACACAAAAATGCATAATTTTGGCCAATTAAATATAAAAGACTAGCTTAATTATTTAGGGAAAAATAGCTAGATATGCTCGCTATCACCACCCAAAGTTCCCTCTTGTATTCCAAACCTTATACAAAGAGGATTGACAATTTGAGAATGCCCGCTAGGTATTAGCCTCCCAAGTTCCAACAGTTTGATGGAAAGGGCAATCCAAAACAACACATCGCCCACTTCGTTGAAACCTGCGAGAACGCTGGAACTCGAGAGACTTGCTTGTCAAACAATTTGTCCGAAAACTGAAAGGAAACGCGTTCGATTGGTACACGAACCTGGAGCCTGAGACAATTGATAGCTGGGAACAGATTTAGAGAGAGTTTTTGAATCGCTTCTACAGTATAAGGTGAACAGTTAGTATGACGGAACTCACGAACACAAAGCAATGGAAGGGTGAACCAGTTATTGACTACATCATCGTTGGAGAGCCTTGAGTCTCGACTGTAAAGATAGACTCTCTGAGGTGTCCTCTGTTGAGATGTGCACCCAAGGCATGCACTGGGGACTTCTTTACATCTTGCAAGGGATAAAACCACGGTTCTTTGAAGAATTAGCGACTCGCGCTCATGATATGGAGTTGAGGATCGCTAGTAGAGGGAATAAAGATCTCGTAGTCCCAGATACGAGGAAGGAAAAAGAAGGAAGTCAAAGGCACTGAGAAGGTTATAAAGAGTGCCACAAAAGAATCCATGGTCATCAACACGACCCCTTTGAAATTTTCCTCCAAAGGAAAAGAAAACAAAACAAATAAGCGAATGGAGACAGGCGAGAGACGTCACCTAACTTTAAAAGAAAGACAGGAAAAGGTCTATCCATTTCCAGATTCCGATGTCCCAGATATGTTGGAACAACTGCTAGAGAAGCAATTAATTGAACTCCCTGAATTCAAACGACCAGAAGAGTTAGGAAAAGTTAATGATCTTAACTATTGCAAGTATCACCGAGTCGTTAGCCACCCGGTGGAGAAATGTTTTGTATTGAAGCAGCTAATCCTTAAGTTGGCTCATGAGAACAAAATTGAGTTGGACCTTGATGAGGTGGCTCAAGCAAATCATGCAACAATAATGGCGAATGTAGGGGATCAAATTCCCCTAATCTCCTCATGTGATTATGAAGAAAGGTTGATTCAATTTGGGACCCTTGATCCCGTAGTGGTTTGATTCAAAAAGGAAGCCACAATAAAGGGATCCCAAGAAAATTCTGATTCCATTGAAGATGAGAACGAAGGTTGGACCATTGTAGTTCATCGCAAAAGGCAAAAACAAAGTTACACACTGAAGGAGTCCCGCCTATTTCGAGATAGTAAAAGAAAGGTGAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCTCTCCACAACCCATAACTTTGACAAAATACTTTCCAAGGCGCTTTCTCGATGATAGTCAAAGAGAGACACTTGAAACTATCACGTGTCACATTGTAGACGTGGTGGAAGATGATGATGTTCCTGCTAGCTCCTCGGGAACGATGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTGCATTGATAGAGTCTAATGGTACAAACATCCCAACCTCTGAGACACGCACATGTGCTTCTTCGTGCTGCATGTCTATAGGATTTTCTGATGAAGATTTGCTGCTAGGGTCGAAGCCTCACAATAGACCTTTATTTGTTTCAGGATATATCCTCAACAGAAGGTTAGTCGGATCCTCATCGATGATGGATCAGTTGTCAACATAATTCCTAAGTCAACCATGAAGCAATTAGGCATCTTGATGGAGGAACTATCAAACAGTAAATTGGTGATCCAAGGTTTCAATCAGGGTGGACAACGGGCGATTGGCATGATACGCCTTGAACTCATCATTGGAGACTTAAAGGTTGATACTTTGTTCCATGTAATAGATTCCAAGACCACCTATAAGTTGTTGTTAGGACATCCTTGGATCCATGGTAACGGAGTCATAACTTCTACATTACGCTAGTGCTTTAAATTCTATCAAGATGGCATCAAGAAAGTTGAAGCTGACACTAACCCATTTTCAGAAGTTGAGTCTCATTTCGTCGATGCAAAGTTTTATCTGAAGAGTGAAAACATAGGGGAAACCGTGCCAGTAGAAATTCCCTTGATAAAAAAGAATGATAAACTCGATGTAGAGCCACAAGCAAATGCAAGAAAGGAAGCTGTTGAAGATGTGAAGGCATCCGACCTGAAAAAGGGTGAAACATCTACAAGTCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGCTACGTCCCTTTATCTCGACGTAGAAAGGGTGAATCAACTTTCACTGGATGTCCAAAAAGCTTAAAGGTCGGTACGTTGAAATTTTGAAGGGAAGTTTCACTATGCCTCTTACAAAGATCACAAAGTGAGAGGTTAAGAAACTTGAGAATGACCAGATAAAAATGATTTTGCCTGACAAACGGACTAAAGACAGGTTCGACCCCAAGGCATACAAACTTCTAGCGAAAGTAGGTTATGACTTCACAACTCCCACTGAGTTTAAAAGTCTAAGGGTTTTTGATGAAAGACCTGAGCTCTCTGCAACACAAAAGAAGCTTCTAAAAGAAGGTTATAGTCTGCCTACAGTGAGAAAAGGACTTGGATATAAGTCGCCCGAGCTGGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGGCAGACATAAATCATATAAAAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGCGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGTTTCAGTCTTTCAGAGATTAAGTGTGAATGAAATGGAAGAAGAAAGCGCACAACCTACCAATAGCTCCACTTGA

mRNA sequence

ATGGTCACAGCGTCGAGACGCTATGACCTTTTGCCGCCTGAATCAGAAAAGGAAAGGCAGCGTCGAGACGCTCCAAGAGCAGCGTCCCGACGCTGTTACACACTGAAGGAGTCCCGCCTATTTCGAGATAGTAAAAGAAAGGTGAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCTCTCCACAACCCATAACTTTGACAAAATACTTTCCAAGGCGCTTTCTCGATGATAGTCAAAGAGAGACACTTGAAACTATCACGTGTCACATTGTAGACGTGGTGGAAGATGATGATGTTCCTGCTAGCTCCTCGGGAACGATGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTGCATTGATAGAGTCTAATGAGCCACAAGCAAATGCAAGAAAGGAAGCTGTTGAAGATGTGAAGGCATCCGACCTGAAAAAGGGTGAAACATCTACAAGTCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGCTACGTCCCTTTATCTCGACGTAGAAAGGGTGAATCAACTTTCACTGGATGTCCAAAAAGCTTAAAGGTCGTGAGAAAAGGACTTGGATATAAGTCGCCCGAGCTGGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGGCAGACATAAATCATATAAAAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGCGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGTTTCAGTCTTTCAGAGATTAAGTGTGAATGAAATGGAAGAAGAAAGCGCACAACCTACCAATAGCTCCACTTGA

Coding sequence (CDS)

ATGGTCACAGCGTCGAGACGCTATGACCTTTTGCCGCCTGAATCAGAAAAGGAAAGGCAGCGTCGAGACGCTCCAAGAGCAGCGTCCCGACGCTGTTACACACTGAAGGAGTCCCGCCTATTTCGAGATAGTAAAAGAAAGGTGAAGTCTCAAAGGAAGAAGGGAAAAAAGAAGTCAAGGAGGTCAAAGCCTGTCGTGGAGGAAAGTGAAGATTTCTTTTGCTCTCCACAACCCATAACTTTGACAAAATACTTTCCAAGGCGCTTTCTCGATGATAGTCAAAGAGAGACACTTGAAACTATCACGTGTCACATTGTAGACGTGGTGGAAGATGATGATGTTCCTGCTAGCTCCTCGGGAACGATGGCAGGTCCAGGAGACTTATCCTCCTTCAGCATAAAGGACTTATTGTCACTTCCTCAGGAAGCTAAAAGTGTCCTTGCATTGATAGAGTCTAATGAGCCACAAGCAAATGCAAGAAAGGAAGCTGTTGAAGATGTGAAGGCATCCGACCTGAAAAAGGGTGAAACATCTACAAGTCTTGTGAAACCTAAGGTTGTAAAGGATGAGAAATGTTCAAATTCACCTATCCTACGCTACGTCCCTTTATCTCGACGTAGAAAGGGTGAATCAACTTTCACTGGATGTCCAAAAAGCTTAAAGGTCGTGAGAAAAGGACTTGGATATAAGTCGCCCGAGCTGGTTCGCATAACAAGAAGAGGGAAGGCGAAAGTGGCAGACATAAATCATATAAAAGTAGAGGAGGTTGATGACTCAAAAGAAAAAGAGAGCGTCGACCAACGAACTTCTGTTTTTAGGCGCATCAGGCCACCAGTTGCTCGTGTTTCAGTCTTTCAGAGATTAAGTGTGAATGAAATGGAAGAAGAAAGCGCACAACCTACCAATAGCTCCACTTGA

Protein sequence

MVTASRRYDLLPPESEKERQRRDAPRAASRRCYTLKESRLFRDSKRKVKSQRKKGKKKSRRSKPVVEESEDFFCSPQPITLTKYFPRRFLDDSQRETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVLALIESNEPQANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLKVVRKGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNSST

Homology

[Close]

BLAST of Spg005116 vs. NCBI nr
Match: KAA0047672.1 (uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK08327.1 uncharacterized protein E5676_scaffold648G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 123.2 bits (308), Expect = 3.8e-24
Identity = 80/183 (43.72%), Postives = 105/183 (57.38%), Query Frame = 0


Query: 142 EAKSVLALIESNEP----QANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPI 201
           EA S+  L+ + E     ++ A ++  +  +     K E STS  K  ++ +E  SN PI
Sbjct: 668 EAVSIEVLLVNREDNFQLKSLASRKPHKSTETFHSGKNEASTSTAKSVILMNENTSNPPI 727

Query: 202 LRYVPLSRRRKGESTFTGCPKSLKV-----------------VRKGLGYKSPELVRITRR 261
           LRYVPLSR +KGES F   P+ LKV                  +KGLGYKSPE +RITR+
Sbjct: 728 LRYVPLSRCKKGESPFVESPQGLKVGDIEVLKESFTIQLTKITKKGLGYKSPEPIRITRK 787

Query: 262 GKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQP 304
           GK KV D NHI V+EVD  + KE   QRTS F RI P VAR  VF+RLS+ E + +  Q 
Sbjct: 788 GKEKVVDSNHITVKEVDSMEGKEGHSQRTSAFDRISPHVARAPVFERLSMTEAKRKDHQS 847

[Close]

BLAST of Spg005116 vs. NCBI nr
Match: KAA0047672.1 (uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK08327.1 uncharacterized protein E5676_scaffold648G001250 [Cucumis melo var. makuwa])

HSP 1 Score: 49.3 bits (116), Expect = 6.9e-02
Identity = 33/114 (28.95%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 48  VKSQRKKGKKKSRRSKPVVEESEDFFCSPQPITLTKYFPRRFLDDSQRETLETITCHIVD 107
           V+  ++   + S+  + +++E ++ +       +T+   R+FL D Q E    + CH ++
Sbjct: 382 VRFHQEVAPEDSQEKEKLIKEDDEGW-----TVVTRRKKRKFLGDHQDENPGVVACHAIN 441

Query: 108 VVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIESNEPQANA 160
             E++ +P  S        DLS F++ DLLSLPQE K++L  AL+ S    ++A
Sbjct: 442 TTEEESIPLRSLEEEGVSKDLSRFNVYDLLSLPQETKTILINALLNSTASSSSA 490

HSP 2 Score: 120.6 bits (301), Expect = 2.4e-23
Identity = 78/169 (46.15%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 159 ARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPK 218
           A KE  + +     +KGE STS  K  ++ DEK SN  ILRYVPLSRR+KGES F   P+
Sbjct: 56  ASKEPHKSIGTFHSRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQ 115

Query: 219 SLK------------------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVE 278
            LK                        V RKG GYKSPE + I R+ K KV D NHI V 
Sbjct: 116 GLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVG 175

Query: 279 EVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS 304
           EVD  +EKE   QR S F +IRP V R +VF+RLSV + E +  Q T+S
Sbjct: 176 EVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSS 224

[Close]

BLAST of Spg005116 vs. NCBI nr
Match: KAA0055957.1 (uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 7.1e-23
Identity = 80/199 (40.20%), Postives = 99/199 (49.75%), Query Frame = 0


Query: 159 ARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPK 218
           A KE  + +      K E ST+  K  ++ DEK SN PILRYVPLSRR+KGES F   P+
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247

Query: 219 SLK------------------------------------------------------VVR 278
            LK                                                      + R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307

Query: 279 KGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSV 304
           KGLGYKSPE +RITR+GK KV D NHI V+EVD  +EKE  +QRTS F RI P VAR  V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367

[Close]

BLAST of Spg005116 vs. NCBI nr
Match: KAA0026300.1 (uncharacterized protein E6C27_scaffold19G003090 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-22
Identity = 103/331 (31.12%), Postives = 131/331 (39.58%), Query Frame = 0


Query: 96  ETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIES- 155
           E LE + CH ++  +++ +P  S        DL  F++ D LS PQE K+++  AL+ S 
Sbjct: 289 ENLEVVACHAINATKEESIPPRSLEEEEVSKDLLRFNVDDFLSFPQETKTIVINALLNSA 348

Query: 156 ---------------------NEPQ------------------ANARKEAVEDVKASDLK 215
                                N P+                  +   KE  +     +  
Sbjct: 349 ASSSCALTITYENAKFYLKHDNIPEVVPIEIPLVNREDNLQLKSITSKEPHKSTGTFNSG 408

Query: 216 KGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK------------ 275
           KGE STS  K  ++  EK SN PILRYVPLSRR+KGES F   P+ LK            
Sbjct: 409 KGEVSTSTTKSMILMYEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIKVLKESFT 468

Query: 276 ------------------------------------------------------------ 297
                                                                       
Sbjct: 469 RQLTKITKQETKIDPTKASLPQRQTKDGFDPKAYKLMAKAGYDFTAHTEFKSLKILKQPE 528

[Close]

BLAST of Spg005116 vs. NCBI nr
Match: TYK21493.1 (uncharacterized protein E5676_scaffold305G00300 [Cucumis melo var. makuwa])

HSP 1 Score: 118.2 bits (295), Expect = 1.2e-22
Identity = 103/331 (31.12%), Postives = 131/331 (39.58%), Query Frame = 0


Query: 96  ETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIES- 155
           E LE + CH ++  +++ +P  S        DL  F++ D LS PQE K+++  AL+ S 
Sbjct: 254 ENLEVVACHAINATKEESIPPRSLEEEEVSKDLLRFNVDDFLSFPQETKTIVINALLNSA 313

Query: 156 ---------------------NEPQ------------------ANARKEAVEDVKASDLK 215
                                N P+                  +   KE  +     +  
Sbjct: 314 ASSSCALTITYENAKFYLKHDNIPEVVPIEIPLVNREDNLQLKSITSKEPHKSTGTFNSG 373

Query: 216 KGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK------------ 275
           KGE STS  K  ++  EK SN PILRYVPLSRR+KGES F   P+ LK            
Sbjct: 374 KGEVSTSTTKSMILMYEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIKVLKESFT 433

Query: 276 ------------------------------------------------------------ 297
                                                                       
Sbjct: 434 RQLTKITKQETKIDPTKASLPQRQTKDGFDPKAYKLMAKAGYDFTAHTEFKSLKILEQPE 493

[Close]

BLAST of Spg005116 vs. ExPASy TrEMBL
Match: A0A5D3C8N8 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001250 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.8e-24
Identity = 80/183 (43.72%), Postives = 105/183 (57.38%), Query Frame = 0


Query: 142 EAKSVLALIESNEP----QANARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPI 201
           EA S+  L+ + E     ++ A ++  +  +     K E STS  K  ++ +E  SN PI
Sbjct: 668 EAVSIEVLLVNREDNFQLKSLASRKPHKSTETFHSGKNEASTSTAKSVILMNENTSNPPI 727

Query: 202 LRYVPLSRRRKGESTFTGCPKSLKV-----------------VRKGLGYKSPELVRITRR 261
           LRYVPLSR +KGES F   P+ LKV                  +KGLGYKSPE +RITR+
Sbjct: 728 LRYVPLSRCKKGESPFVESPQGLKVGDIEVLKESFTIQLTKITKKGLGYKSPEPIRITRK 787

Query: 262 GKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQP 304
           GK KV D NHI V+EVD  + KE   QRTS F RI P VAR  VF+RLS+ E + +  Q 
Sbjct: 788 GKEKVVDSNHITVKEVDSMEGKEGHSQRTSAFDRISPHVARAPVFERLSMTEAKRKDHQS 847

[Close]

BLAST of Spg005116 vs. ExPASy TrEMBL
Match: A0A5D3C8N8 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G001250 PE=4 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-02
Identity = 33/114 (28.95%), Postives = 61/114 (53.51%), Query Frame = 0


Query: 48  VKSQRKKGKKKSRRSKPVVEESEDFFCSPQPITLTKYFPRRFLDDSQRETLETITCHIVD 107
           V+  ++   + S+  + +++E ++ +       +T+   R+FL D Q E    + CH ++
Sbjct: 382 VRFHQEVAPEDSQEKEKLIKEDDEGW-----TVVTRRKKRKFLGDHQDENPGVVACHAIN 441

Query: 108 VVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIESNEPQANA 160
             E++ +P  S        DLS F++ DLLSLPQE K++L  AL+ S    ++A
Sbjct: 442 TTEEESIPLRSLEEEGVSKDLSRFNVYDLLSLPQETKTILINALLNSTASSSSA 490

HSP 2 Score: 120.6 bits (301), Expect = 1.2e-23
Identity = 78/169 (46.15%), Postives = 94/169 (55.62%), Query Frame = 0


Query: 159 ARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPK 218
           A KE  + +     +KGE STS  K  ++ DEK SN  ILRYVPLSRR+KGES F   P+
Sbjct: 56  ASKEPHKSIGTFHSRKGEASTSTTKSMILMDEKTSNPLILRYVPLSRRQKGESPFVKFPQ 115

Query: 219 SLK------------------------VVRKGLGYKSPELVRITRRGKAKVADINHIKVE 278
            LK                        V RKG GYKSPE + I R+ K KV D NHI V 
Sbjct: 116 GLKVGDMKQPKLSLIQKKLLREGHVIPVSRKGPGYKSPEPIHIIRKRKKKVIDSNHITVG 175

Query: 279 EVDDSKEKESVDQRTSVFRRIRPPVARVSVFQRLSVNEMEEESAQPTNS 304
           EVD  +EKE   QR S F +IRP V R +VF+RLSV + E +  Q T+S
Sbjct: 176 EVDSMEEKEGGSQRISAFDQIRPHVVRTTVFERLSVTKTERKCHQSTSS 224

[Close]

BLAST of Spg005116 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.4e-23
Identity = 80/199 (40.20%), Postives = 99/199 (49.75%), Query Frame = 0


Query: 159 ARKEAVEDVKASDLKKGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPK 218
           A KE  + +      K E ST+  K  ++ DEK SN PILRYVPLSRR+KGES F   P+
Sbjct: 188 ASKEPHKSIGTFHSGKSEASTNTAKSVILMDEKTSNPPILRYVPLSRRKKGESPFVESPQ 247

Query: 219 SLK------------------------------------------------------VVR 278
            LK                                                      + R
Sbjct: 248 GLKRRTKDGFDPKAYKLMAKAGYDFITHTEFKSLKIHEQPKLSSTQKKLLREGHVIPMSR 307

Query: 279 KGLGYKSPELVRITRRGKAKVADINHIKVEEVDDSKEKESVDQRTSVFRRIRPPVARVSV 304
           KGLGYKSPE +RITR+GK KV D NHI V+EVD  +EKE  +QRTS F RI P VAR  V
Sbjct: 308 KGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKEGDNQRTSTFDRISPHVARAPV 367

[Close]

BLAST of Spg005116 vs. ExPASy TrEMBL
Match: A0A5A7SJC0 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G003090 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.8e-23
Identity = 103/331 (31.12%), Postives = 131/331 (39.58%), Query Frame = 0


Query: 96  ETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIES- 155
           E LE + CH ++  +++ +P  S        DL  F++ D LS PQE K+++  AL+ S 
Sbjct: 289 ENLEVVACHAINATKEESIPPRSLEEEEVSKDLLRFNVDDFLSFPQETKTIVINALLNSA 348

Query: 156 ---------------------NEPQ------------------ANARKEAVEDVKASDLK 215
                                N P+                  +   KE  +     +  
Sbjct: 349 ASSSCALTITYENAKFYLKHDNIPEVVPIEIPLVNREDNLQLKSITSKEPHKSTGTFNSG 408

Query: 216 KGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK------------ 275
           KGE STS  K  ++  EK SN PILRYVPLSRR+KGES F   P+ LK            
Sbjct: 409 KGEVSTSTTKSMILMYEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIKVLKESFT 468

Query: 276 ------------------------------------------------------------ 297
                                                                       
Sbjct: 469 RQLTKITKQETKIDPTKASLPQRQTKDGFDPKAYKLMAKAGYDFTAHTEFKSLKILKQPE 528

[Close]

BLAST of Spg005116 vs. ExPASy TrEMBL
Match: A0A5D3DD54 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00300 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 5.8e-23
Identity = 103/331 (31.12%), Postives = 131/331 (39.58%), Query Frame = 0


Query: 96  ETLETITCHIVDVVEDDDVPASSSGTMAGPGDLSSFSIKDLLSLPQEAKSVL--ALIES- 155
           E LE + CH ++  +++ +P  S        DL  F++ D LS PQE K+++  AL+ S 
Sbjct: 254 ENLEVVACHAINATKEESIPPRSLEEEEVSKDLLRFNVDDFLSFPQETKTIVINALLNSA 313

Query: 156 ---------------------NEPQ------------------ANARKEAVEDVKASDLK 215
                                N P+                  +   KE  +     +  
Sbjct: 314 ASSSCALTITYENAKFYLKHDNIPEVVPIEIPLVNREDNLQLKSITSKEPHKSTGTFNSG 373

Query: 216 KGETSTSLVKPKVVKDEKCSNSPILRYVPLSRRRKGESTFTGCPKSLK------------ 275
           KGE STS  K  ++  EK SN PILRYVPLSRR+KGES F   P+ LK            
Sbjct: 374 KGEVSTSTTKSMILMYEKTSNPPILRYVPLSRRKKGESPFVEFPQGLKVGDIKVLKESFT 433

Query: 276 ------------------------------------------------------------ 297
                                                                       
Sbjct: 434 RQLTKITKQETKIDPTKASLPQRQTKDGFDPKAYKLMAKAGYDFTAHTEFKSLKILEQPE 493

The following BLAST results are available for this feature:

BLAST of Spg005116 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047672.1	3.8e-24	43.72	uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0047672.1	6.9e-02	28.95	uncharacterized protein E6C27_scaffold115G001730 [Cucumis melo var. makuwa] >TYK...	[more]
KAA0055957.1	7.1e-23	40.20	uncharacterized protein E6C27_scaffold319G00830 [Cucumis melo var. makuwa]	[more]
KAA0026300.1	1.2e-22	31.12	uncharacterized protein E6C27_scaffold19G003090 [Cucumis melo var. makuwa]	[more]
TYK21493.1	1.2e-22	31.12	uncharacterized protein E5676_scaffold305G00300 [Cucumis melo var. makuwa]	[more]

BLAST of Spg005116 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C8N8	1.8e-24	43.72	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00125...	[more]
A0A5D3C8N8	3.3e-02	28.95	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G00125...	[more]
A0A5A7UMY2	3.4e-23	40.20	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7SJC0	5.8e-23	31.12	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G003090...	[more]
A0A5D3DD54	5.8e-23	31.12	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold305G00300...	[more]

BLAST of Spg005116 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 10..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005116.1	Spg005116.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process