Spg005086 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005086
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	PMD domain-containing protein
Location	scaffold11: 12719248 .. 12721806 (-)
RNA-Seq Expression	Spg005086
Synteny	Spg005086

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTTGTTTCCGGACGCTCCCGCTCCCCACCAGAACCTGGCACACATAGAATTCAGCTCGTTACACAAAGACATAGGAAATTTAAAGCAGCTCATAGCATAGTCAGGTATCGCTTGAGCCACAACTTTTATAAGGATCTCCCTTCCAACAGCTGAAAAAAATCTCCCTTTCCATCCTTGAAGCGCTTGCTAGACTCGCTGCTTAATGTGATTGAAAATCTCTTTCTTGCTACGAGCATTTTGGGATGGAAGCCCGAGATATTGCCCCACACTCTCTGTATGCTTCACCTACAAAATATCCTCAACCTTTTTGGCAAGATCATTGTTAATATTAGAGCTAGTCATAAAATTAGATTTATCAAAATTAATTACTTGCCCCGATGCTTTCCTCATAAGTCTCCAAAACCTTCTTAATCGACCTGCAATCCTTCTTAGTAGCTTTAAAGAACAACAAACTATTGTCAGCATAGAATAAGTGAGATATCATAGGGCAATATCTATTAATACGCAAACCTGTCAGCTCTTTATTATCAGTCGCTTTGTTGAGAAGCCTGGAGAGACCTTCAGCACACATAAGGAACATGTAAGGGGATAATGGATCCCCTTGTCTAAGTCCTCTCTTCGGGGAGAATTCAACTCTTGGAACCTCATTCAATAGAACCTGGAAAGACACAGATTCAATGCAACCCATGATAAGATCGATCCACCGGCTACTAAAACCCATCTTATCCATGATCTTTTGAATGTATACCCATTCCACCCGATCATATGCTTAATTCATAAGGAGGAAAAATTTAGAGAGAGAGAGACTGGGAGAGCGAGAGGCAGTGAGAAGAGTTTTTGTTTTTTTTTTTTTCGTGTTGGATTGACGTTGGCAGAAGACATAGCAGCGGCGACTTCATCTTTGAGGCGGCGCCCACGAGAGGGGGAAGAGAGTGAGAGAGAGAGCGAGAGAAACGGTTTTGTGTGGTGAGAGAGAAAGAATGGAGGGAAGAGAATGCGTGAGAAGTGTAGAGAGGGGGAGGAATATCGTGACCCTTAAACTTCCTTATCATCATGTTTTTTCATTTTTTATAAAATTAATTACTTTTGTCTGTTAGTGAGAACATGCCTCTAGTTTTCTTCCTTGTTTTTTATTACTTTTTTTATTTATTCATTTATTTTCTTTTTTATCTTTTTGATTATTTTTTTAATTTTTGTTATTTCTTCTTTTGTACCGGTTTTCTTTCTTTCTTTTTTTTTTTAAGTTCTTTAATTTGCTTTTTTTTCGTTTTTTTTGTTTTTTTTTAAACTTTCTGAATCCCCCCTTTTTTTTTTTGTTTTTTTAAATATATTTTAATTTATTTTCTTTTTGTTTATTGATTTTTTTTTTTATCTTTTAACTCTCCAACTATTTTTTGTTTTTTTTTTTAAATATCTTTTAACTTTATTACTGTTTTTTGTTTATTGATTTTTTTATCTTTTAACTTTCCAACTATTTTTGTTTTTTTTTTAATATCTTTTAACTTTATTACTTTTTTTTTGTTTATTGATTTTTTTTATCTTTTAACTTTCCAACTATTTTTGTTTTTTTTTTAAATATCTTCTTTTTTTTTTTCATTTTTTTTATTTGCTTCTTTTTTGGTAATCAAAGACATGCACTTTTTTTCTTTCCTAGTTTTTTTTTGCCCTTTACGTTTTTTTTTTAATTTTGATCTTTGCACACTTTTGGCTCCACTTGTTTATTTATTTATTATTTATTAATTTAACTTAATGAACCTCTTTTTTTTTTTTTTTGCTTGCTAATTACTCTTTTCTTTCTTGATCTCAGGGAACACTCGTGTTCAATCGCTCTCATTGCACAACTGATATTTGCTTGCCAACCAGTGTTGAATTCCTTCACAGTAGCTTTCATCCACCATCCAGGTACTGAAAATCACATCTTGAAGTCGAAACCAAGCGAAAGTGGGGGGTGACACTTATGAGGTAGGGCTATGACCCTCAGTGTTCATCCCCTGCTTAGCTTACAACCTTGTAACCGAAACCAAGCGAAAGTGGGGAATGACACTTATGAGGTAGGACTATGACCCTCAGTGTTCATTCTCTACTTAGCTTCGAAACTTAAAATCGAAACCAAGCGAAAGTGGGGAATGACACTTATGAGGTAGGGCTATGACCCTCAGTGTTCATCCTCTGCTTAGCTTCCAGCCTTGAAACCGAAAACCAAGTGAAAGTGGGGGCGACACTTATAAGGTAGGTCTATGACCCTTAGTGTTCATCCCCTACTTAGCTTGCAACAAATTTTATTTGCTTTGCCCCCGTTTTTTTTTTCAACAACTGAACCCAATTTTTTTTTTTTTTATTCTCAGGATCATGGTATACTTCATTGAGCATATCTCCTCCGAGAAGAAATATCTTGTCATTCTCAAGGACAAAGATCAGCCTATTAAAAACGGGTTTCGTGTCCTGGTTGAGGAACCAAAGTCTGGCCCTCTTTCAGACCTATGGCCAAATTTAAATGATGTCGTATTTTTACCCGAACTATCGACGGAAAAGGTTTTAAGCCAAGAAGAATGA

mRNA sequence

ATGGATTTTGTTTCCGGACGCTCCCGCTCCCCACCAGAACCTGGCACACATAGAATTCAGCTCGTTACACAAAGACATAGGAAATTTAAAGCAGCTCATAGCATAGTCAGGGAACACTCGTGTTCAATCGCTCTCATTGCACAACTGATATTTGCTTGCCAACCAGTGTTGAATTCCTTCACAGTAGCTTTCATCCACCATCCAGGTACTGAAAATCACATCTTGAAGTCGAAACCAAGCGAAAGTGGGGGGATCATGGTATACTTCATTGAGCATATCTCCTCCGAGAAGAAATATCTTGTCATTCTCAAGGACAAAGATCAGCCTATTAAAAACGGGTTTCGTGTCCTGGTTGAGGAACCAAAGTCTGGCCCTCTTTCAGACCTATGGCCAAATTTAAATGATGTCGTATTTTTACCCGAACTATCGACGGAAAAGGTTTTAAGCCAAGAAGAATGA

Coding sequence (CDS)

ATGGATTTTGTTTCCGGACGCTCCCGCTCCCCACCAGAACCTGGCACACATAGAATTCAGCTCGTTACACAAAGACATAGGAAATTTAAAGCAGCTCATAGCATAGTCAGGGAACACTCGTGTTCAATCGCTCTCATTGCACAACTGATATTTGCTTGCCAACCAGTGTTGAATTCCTTCACAGTAGCTTTCATCCACCATCCAGGTACTGAAAATCACATCTTGAAGTCGAAACCAAGCGAAAGTGGGGGGATCATGGTATACTTCATTGAGCATATCTCCTCCGAGAAGAAATATCTTGTCATTCTCAAGGACAAAGATCAGCCTATTAAAAACGGGTTTCGTGTCCTGGTTGAGGAACCAAAGTCTGGCCCTCTTTCAGACCTATGGCCAAATTTAAATGATGTCGTATTTTTACCCGAACTATCGACGGAAAAGGTTTTAAGCCAAGAAGAATGA

Protein sequence

MDFVSGRSRSPPEPGTHRIQLVTQRHRKFKAAHSIVREHSCSIALIAQLIFACQPVLNSFTVAFIHHPGTENHILKSKPSESGGIMVYFIEHISSEKKYLVILKDKDQPIKNGFRVLVEEPKSGPLSDLWPNLNDVVFLPELSTEKVLSQEE

Homology

[Close]

BLAST of Spg005086 vs. NCBI nr
Match: TYK06377.1 (hypothetical protein E5676_scaffold163G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 9.3e-08
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 84  GIMVYFIEHISSEKKYLVILKDKDQPIKNGFRVLVEEPKSGPLSDLWPNLNDVVFLPELS 143
           G+MVYF E   S  ++LVIL D++QP ++G  +LVE+P +G ++D WP L++   LP LS
Sbjct: 15  GMMVYFTERFLSGVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLS 74

Query: 144 TEKVLSQEE 153
            E  LS+E+
Sbjct: 75  VEIPLSEEK 83

[Close]

BLAST of Spg005086 vs. NCBI nr
Match: KAA0050122.1 (hypothetical protein E6C27_scaffold675G001390 [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 4.6e-07
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 85  IMVYFIEHISSEKKYLVILKDKDQPIKNGFRVLVEEPKSGPLSDLWPNLNDVVFLPELST 144
           +MVYF E   S  ++LVIL D++QP ++G  +LVE+P +G ++D WP L++   LP LS 
Sbjct: 73  MMVYFTERFLSGVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSV 132

Query: 145 EKVLSQEE 153
           E  LS+E+
Sbjct: 133 EIPLSEEK 140

[Close]

BLAST of Spg005086 vs. NCBI nr
Match: KAA0048380.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 75  LKSKPSESGG----IMVYFIEHISSEKKYLVILKDKDQPIKNGFRVLVEEPKSGPLSDLW 134
           L  +P++S       MVYF E   SE ++LVIL D++QP ++G  ++VE P +G  +D W
Sbjct: 45  LSERPTDSSTPVTITMVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHW 104

Query: 135 PNLNDVVFLPELSTEKVLSQ 151
           P L++   LP LS E  LS+
Sbjct: 105 PRLDNNSVLPRLSVEIPLSE 124

[Close]

BLAST of Spg005086 vs. NCBI nr
Match: KAA0046555.1 (hypothetical protein E6C27_scaffold114G00780 [Cucumis melo var. makuwa] >TYK28704.1 hypothetical protein E5676_scaffold403G00180 [Cucumis melo var. makuwa])

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-06
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 86  MVYFIEHISSEKKYLVILKDKDQPIKNGFRVLVEEPKSGPLSDLWPNLNDVVFLPELSTE 145
           MVYF E   S  ++LVIL D++QP ++G  ++VE+P +G  +D WP LN+   LP LS E
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLNLIVEKPWAGAFADHWPRLNNNSVLPRLSVE 60

Query: 146 KVLSQ 151
             LS+
Sbjct: 61  LPLSE 65

[Close]

BLAST of Spg005086 vs. NCBI nr
Match: KAA0057574.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 63.2 bits (152), Expect = 2.3e-06
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 84  GIMVYFIEHISSEKKYLVILKDKDQPIKNGFRVLVEEPKSGPLSDLWPNLNDVVFLPELS 143
           G MVYF E   S  ++LVIL D++QP ++G  ++VE+P +G  +D WP L++   LP LS
Sbjct: 15  GTMVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLS 74

Query: 144 TEKVLSQ 151
            E  LS+
Sbjct: 75  VEVPLSE 81

[Close]

BLAST of Spg005086 vs. ExPASy TrEMBL
Match: A0A5D3C3H5 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G00690 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.5e-08
Identity = 32/69 (46.38%), Postives = 48/69 (69.57%), Query Frame = 0


Query: 84  GIMVYFIEHISSEKKYLVILKDKDQPIKNGFRVLVEEPKSGPLSDLWPNLNDVVFLPELS 143
           G+MVYF E   S  ++LVIL D++QP ++G  +LVE+P +G ++D WP L++   LP LS
Sbjct: 15  GMMVYFTERFLSGVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLS 74

Query: 144 TEKVLSQEE 153
            E  LS+E+
Sbjct: 75  VEIPLSEEK 83

[Close]

BLAST of Spg005086 vs. ExPASy TrEMBL
Match: A0A5A7U2Q8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G001390 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 2.2e-07
Identity = 31/68 (45.59%), Postives = 47/68 (69.12%), Query Frame = 0


Query: 85  IMVYFIEHISSEKKYLVILKDKDQPIKNGFRVLVEEPKSGPLSDLWPNLNDVVFLPELST 144
           +MVYF E   S  ++LVIL D++QP ++G  +LVE+P +G ++D WP L++   LP LS 
Sbjct: 73  MMVYFTERFLSGVRHLVILSDRNQPREDGLSLLVEKPWAGAVADYWPRLDNNSILPRLSV 132

Query: 145 EKVLSQEE 153
           E  LS+E+
Sbjct: 133 EIPLSEEK 140

[Close]

BLAST of Spg005086 vs. ExPASy TrEMBL
Match: A0A5A7TZ08 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00990 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.0e-07
Identity = 33/80 (41.25%), Postives = 49/80 (61.25%), Query Frame = 0


Query: 75  LKSKPSESGG----IMVYFIEHISSEKKYLVILKDKDQPIKNGFRVLVEEPKSGPLSDLW 134
           L  +P++S       MVYF E   SE ++LVIL D++QP ++G  ++VE P +G  +D W
Sbjct: 45  LSERPTDSSTPVTITMVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHW 104

Query: 135 PNLNDVVFLPELSTEKVLSQ 151
           P L++   LP LS E  LS+
Sbjct: 105 PRLDNNSVLPRLSVEIPLSE 124

[Close]

BLAST of Spg005086 vs. ExPASy TrEMBL
Match: A0A5A7TYW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00180 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.5e-07
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 86  MVYFIEHISSEKKYLVILKDKDQPIKNGFRVLVEEPKSGPLSDLWPNLNDVVFLPELSTE 145
           MVYF E   S  ++LVIL D++QP ++G  ++VE+P +G  +D WP LN+   LP LS E
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLNLIVEKPWAGAFADHWPRLNNNSVLPRLSVE 60

Query: 146 KVLSQ 151
             LS+
Sbjct: 61  LPLSE 65

[Close]

BLAST of Spg005086 vs. ExPASy TrEMBL
Match: A0A5A7UR46 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00460 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 1.1e-06
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 84  GIMVYFIEHISSEKKYLVILKDKDQPIKNGFRVLVEEPKSGPLSDLWPNLNDVVFLPELS 143
           G MVYF E   S  ++LVIL D++QP ++G  ++VE+P +G  +D WP L++   LP LS
Sbjct: 15  GTMVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLS 74

Query: 144 TEKVLSQ 151
            E  LS+
Sbjct: 75  VEVPLSE 81

The following BLAST results are available for this feature:

BLAST of Spg005086 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06377.1	9.3e-08	46.38	hypothetical protein E5676_scaffold163G00690 [Cucumis melo var. makuwa]	[more]
KAA0050122.1	4.6e-07	45.59	hypothetical protein E6C27_scaffold675G001390 [Cucumis melo var. makuwa]	[more]
KAA0048380.1	1.0e-06	41.25	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0046555.1	1.8e-06	46.15	hypothetical protein E6C27_scaffold114G00780 [Cucumis melo var. makuwa] >TYK2870...	[more]
KAA0057574.1	2.3e-06	44.78	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]

BLAST of Spg005086 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C3H5	4.5e-08	46.38	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7U2Q8	2.2e-07	45.59	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7TZ08	5.0e-07	41.25	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5A7TYW3	8.5e-07	46.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UR46	1.1e-06	44.78	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]

BLAST of Spg005086 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005086.1	Spg005086.1	mRNA