Spg005082 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005082
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	CCHC-type domain-containing protein
Location	scaffold11: 12005298 .. 12007821 (-)
RNA-Seq Expression	Spg005082
Synteny	Spg005082

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCGCAACGGACTCGGACTTTTCTGTTTCTGCCCAGAAATGCGATCGCATTTCATTTTGCCTTGGCAGAAATGGGGTCGTATTTCATTTGCCTTGGCAAAGTGCGGTCGCATTTCATTTGCCTTGGCAAAATGCGATCGCATTTCAATAGCATTTCAACAACATTTCTCTGTTTTCCTCTATTTTCTGCAAAACACCAAAACTAAGTCAAATACATACCAAAATGAGTTCTTTTAAGCACAAATATGTACAATTTGGCACACATGACTCTCAAAGACCTAACTTACCAACTCTTACACTTTTTAGGCTCGGGAATAGTAATTTTGACCAAAAACATACAAGTTTGGACAAGAAATAAGCTAAAAATAAGGGCAAAATATGTATATTTTTGGCACTTATCAGAACGCATTGGATCATTGCGTTTGTATCAAAATACAAAGTGGGCCGTATCCATAGTGTCACCAGGATAAGGTACCCAGCCTTATCCCATACTATATGTAAACCCGAGACTTTCCCTTAGATAATTTTCTCTTATCATCTATTGTGGCTTCATGGTTGAACCTAAGTTGTTGGAAATTATACATTTAAAAAGAAAGGAATTAAACAAGTGAAGAAAAGAAAAGAAAAGAAAAGGAAAAGGAAAAGGGAAAAAGGAAAAAAAAAAAAAAAAAAAGAAAAGGAAAGAAAGAAGATGGGAAATGACAGCAAGACACCCACCACCGACTACACTTTTTATCAGCCCATTTTCATTTCATTTCTCATCTTTTTCCATCCACATCTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTGAGGTTGAAGAAGATAGGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTCTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGTTAGGTTTGATTTTCTTGAAAGTTAGTTCATTTTCTAACAAATGTTATGAAGGAATCTTGACCTAAATCGTATGAGAAGTTGATGGTTTTTGGAATGGAAAACAGAGCACAGGATTTTCGAGCAAAGCAGGAGGATCTCTGGTTTTCTCTGATGTTTTGAGCATTCTGGGGTGTACAAGTTGAATCAGAAGCTCTATTTGGTATGGTTGGAAAGCTTATTCAATTATCTACAACTTTCATGAAGAATTTGTGAGACAAAAATGACTTGAAGTAGGTTTACTTTCAGGAGGAAGATAAAGGGTAACAGAGAAGCTCGAATCTGTGTTGTCTGATTTCGGGGAATTTCTGGACAAATTGGTTGGGAATCTCGTTTTCATTTCTTCAGGTAAGTTGTAGATTGTTCGAAAATGAAGAGTTTGATTTGTATTTCATTAATTTTGGTTAAGTATTTAGGAAGGTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAGAGTAGAGTGTGAATGTGAATCTTAATCCAATTGTTTTAAAATTCATGAGCATGGAAAGACAAAGCTATGTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACAGGGGAACTAGATAAGACTGTGAGTGACAAAATGAATTTCGAAAATTGTTTCCAACGGTTTCATGTTTAGATGTTTTACATGTTTTCCTATGAATGATTCATGATTTCTATTAACGGTTTCAAGCATGAGTTTTGAGCTTAGATTTTCTAATGAGGTTTATATACGAGCACGTGTCTAATGACTTTATGAAAAGTAGCTGAAACGATATCTTTTAAAGCAAAGTATGGATTAGCAAGTACTTTTAAACGATTTCCAGTTTTTCATGAGCAAGCTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCCGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTCGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTTGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACAAAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTGATATGCCTTGCTAGATTTTTAATGACGAACTTGCGAGATATTTTAGAAAGCCTTTATCATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTCTAAATGTTTTGTAA

mRNA sequence

ATGACCCGCAACGGACTCGGACTTTTCTGTTTCTGCCCAGAAATGCGATCGCATTTCATTTTGCCTTGGCAGAAATGGGGTCGTATTTCATTTGCCTTGGCAAAGTGCGGTCGCATTTCATTTGCCTTGGCAAAATGCGATCGCATTTCAATAGCATTTCAACAACATTTCTCTGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTCTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACAGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTCTAAATGTTTTGTAA

Coding sequence (CDS)

ATGACCCGCAACGGACTCGGACTTTTCTGTTTCTGCCCAGAAATGCGATCGCATTTCATTTTGCCTTGGCAGAAATGGGGTCGTATTTCATTTGCCTTGGCAAAGTGCGGTCGCATTTCATTTGCCTTGGCAAAATGCGATCGCATTTCAATAGCATTTCAACAACATTTCTCTGGAAAAGCTCATGCAAAGCCAGCCATTGCAGGATCTGAGATCAACCTGTCAACCTCTGGTTTCTTATTCGGTTTGAGCTACACAGAAGGAATCAAGAGGCCAAGAGGAAGTAGGTCGAGTCTACAAACAGGGGAACTAGATAAGACTGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTCTAAATGTTTTGTAA

Protein sequence

MTRNGLGLFCFCPEMRSHFILPWQKWGRISFALAKCGRISFALAKCDRISIAFQQHFSGKAHAKPAIAGSEINLSTSGFLFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHILNVL

Homology

[Close]

BLAST of Spg005082 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.8 bits (247), Expect = 2.1e-17
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 80  LFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIES 139
           LF LSY EG KRPRG+R SLQTG+LDKTVEIELP+PDTLPT AES  ++SSTW+ELY ES
Sbjct: 19  LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFES 78

Query: 140 VHI 143
           VH+
Sbjct: 79  VHV 81

[Close]

BLAST of Spg005082 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 2.8e-17
Identity = 56/105 (53.33%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 60  KAHAKPAIAGSEINLSTSGFLFGLSYTEGIK----------------------RPRGSRS 119
           K +AKPAIA S  N      LFGLSY E ++                       PRG+R 
Sbjct: 25  KVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGNRP 84

Query: 120 SLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI 143
           +L TG+LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+
Sbjct: 85  NLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV 129

[Close]

BLAST of Spg005082 vs. NCBI nr
Match: KAA0025357.1 (hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa] >TYK23443.1 hypothetical protein E5676_scaffold605G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 3.1e-16
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 80  LFGLSYTEGIKRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 139
           LFGLSY EG KRP+G+R SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLSYPEGTKRPKGNRLSLQTGELDKTVIFLLSTLSVLRDNDVVVEIELPVPDTLPTSA 78

Query: 140 ESSRTSSSTWVELYIESVHI 143
           ES R++S+TW+ELY ES+H+
Sbjct: 79  ESFRSNSNTWLELYFESIHV 98

[Close]

BLAST of Spg005082 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 4.4e-15
Identity = 50/80 (62.50%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 80  LFGLSYTEGIKRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 139
           LFGL Y EG KRPRG+R+SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 140 ESSRTSSSTWVELYIESVHI 143
           ESS ++SSTW+EL  E VH+
Sbjct: 79  ESSGSNSSTWLELNFEFVHV 98

[Close]

BLAST of Spg005082 vs. NCBI nr
Match: KAA0062263.1 (hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 8.4e-14
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 83  LSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI 142
           +S  E ++ PRG+R SLQ G+L+KTVEIELP+PDTLPTS+ESS+++SSTW+ELY ESVH+
Sbjct: 82  ISNLENLEMPRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESVHV 141

[Close]

BLAST of Spg005082 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.0e-17
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 0


Query: 80  LFGLSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIES 139
           LF LSY EG KRPRG+R SLQTG+LDKTVEIELP+PDTLPT AES  ++SSTW+ELY ES
Sbjct: 19  LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFES 78

Query: 140 VHI 143
           VH+
Sbjct: 79  VHV 81

[Close]

BLAST of Spg005082 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 1.3e-17
Identity = 56/105 (53.33%), Postives = 67/105 (63.81%), Query Frame = 0


Query: 60  KAHAKPAIAGSEINLSTSGFLFGLSYTEGIK----------------------RPRGSRS 119
           K +AKPAIA S  N      LFGLSY E ++                       PRG+R 
Sbjct: 25  KVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGNRP 84

Query: 120 SLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI 143
           +L TG+LDKTVEIELPVPDTLPTSAESS+++SSTW+ELY ESVH+
Sbjct: 85  NLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV 129

[Close]

BLAST of Spg005082 vs. ExPASy TrEMBL
Match: A0A5D3DIM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00460 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-16
Identity = 50/80 (62.50%), Postives = 58/80 (72.50%), Query Frame = 0


Query: 80  LFGLSYTEGIKRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 139
           LFGLSY EG KRP+G+R SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLSYPEGTKRPKGNRLSLQTGELDKTVIFLLSTLSVLRDNDVVVEIELPVPDTLPTSA 78

Query: 140 ESSRTSSSTWVELYIESVHI 143
           ES R++S+TW+ELY ES+H+
Sbjct: 79  ESFRSNSNTWLELYFESIHV 98

[Close]

BLAST of Spg005082 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-15
Identity = 50/80 (62.50%), Postives = 56/80 (70.00%), Query Frame = 0


Query: 80  LFGLSYTEGIKRPRGSRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 139
           LFGL Y EG KRPRG+R+SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19  LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 140 ESSRTSSSTWVELYIESVHI 143
           ESS ++SSTW+EL  E VH+
Sbjct: 79  ESSGSNSSTWLELNFEFVHV 98

[Close]

BLAST of Spg005082 vs. ExPASy TrEMBL
Match: A0A5A7V2F2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00320 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.0e-14
Identity = 40/60 (66.67%), Postives = 53/60 (88.33%), Query Frame = 0


Query: 83  LSYTEGIKRPRGSRSSLQTGELDKTVEIELPVPDTLPTSAESSRTSSSTWVELYIESVHI 142
           +S  E ++ PRG+R SLQ G+L+KTVEIELP+PDTLPTS+ESS+++SSTW+ELY ESVH+
Sbjct: 82  ISNLENLEMPRGNRPSLQIGKLEKTVEIELPMPDTLPTSSESSKSNSSTWLELYFESVHV 141

The following BLAST results are available for this feature:

BLAST of Spg005082 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040420.1	2.1e-17	76.19	NBS-LRR type resistance protein [Cucumis melo var. makuwa]	[more]
KAA0052218.1	2.8e-17	53.33	uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0...	[more]
KAA0025357.1	3.1e-16	62.50	hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa] >TYK234...	[more]
KAA0051980.1	4.4e-15	62.50	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D...	[more]
KAA0062263.1	8.4e-14	66.67	hypothetical protein E6C27_scaffold679G00320 [Cucumis melo var. makuwa]	[more]

BLAST of Spg005082 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005082 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TAS6	1.0e-17	76.19	NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5A7UAH6	1.3e-17	53.33	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A5D3DIM8	1.5e-16	62.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7U9X4	2.1e-15	62.50	DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V2F2	4.0e-14	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Spg005082 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005082.1	Spg005082.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process
molecular_function	GO:0016740	transferase activity