Spg005073 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005073
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ty3-gypsy retrotransposon protein
Location	scaffold11: 11655503 .. 11660176 (+)
RNA-Seq Expression	Spg005073
Synteny	Spg005073

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGGGCCAAAACCAAAGTGATCGGGCTTTTGGCCCAACCCCCTACTCAGCCTCGGCCAAGGCCGAGCTCGTCCGACTCCATTTTTCCCCTACTGCCCTTGACCACCACGGCTCGACCTGGTTCATCCCGAAACGCCTCCGAACGCCAAGTAAACCCTAACGAAAGACACAGGTATAAATGGGGCCTCCCACACCCAGAAAAAAGGTTCAAAATCTGACTACTAAAATACTTTTGACTGTTGATCTGACTTAGGCATCGGAGTGCAGGTGGCCTACACCACACCGGTGTGCAGTGCTTCTGACTGGTCTCGCAGGTCGTCATCCCCGTCTTCAACAAATTCACTGCTGGTGTCACGTGAAGGTCAGGTGAGTGGCTTGGCCAGATTTTGGCATCAACATAAATAATGGTTTTTGTGCTATGCTTAGGTTCCATATATATAGAAATATGAAAACAAAAAAGAAAATGGAAGGAGTGGGAGAATCATAGGAGGGTGAGAGAGACATTTTAGGGGAGATGATGTCATTTCTCTTAGAGAGAAAAATATAAAAACTTTTTATTGAAAAGGAGTAGAAGATAGTCTTTATAGTTTTAGGAAATAAAAAAAGTGAGAGAGAAAAAATATAAATAAAAAGAAAAAGTTGATTGTGAACCTCACATTATTGTTGAGGATGAGAAGAAGATAGCCTTTTATAGGTGTAGAATATGAAGAGGTTCAAAAACCTTTGAGATTCTACAACTTTTGAAATTCAATAATTAAATTAAACATAATAAATGCTACATAAGAAGGTTTTGGTAATATTAATCTTCCAAGCTCCTCTATTTACATATTTTCAAGTCTTTTCTTAAATTACAAAAATTAAGCATCACAATAAAAGAGAAGATAAAGTTGAATGTTACTGTTGAAGGAGAAATTTTGACCAATCACAAATTGCCACGTCGTTATTTAAAATTAATGACGAAATTACAAATAATTAAATTTGGGACCAATTATAAATTGACATGTGTCCCAAATTTAATTTGAAGACAAAGTTGGCCAATTATAAATTCTTAGGGTCAAATGTCCATTTGATCAATTAATTAAAAATAAATTATTTTGATCAAATTAATTAAAAAATAATTATTTGGATCAAATTTGGGTCTTTTAAATATTTGGGTCATATGGTTCGGTTTTGGATCAAATGTGAACCAAACCCAAGACCAAATGGTTGAGCCCAAGACCAATAAAGCCCAAGTCCAAATTGTTAGGCCCAAAAGTCACCATGGCCCATCCATGGAGAACTCTATAAATAAAGGGATTCTCCTCCATTTCAAGGGTTCAGAAATTCTAGACTCTCACAAAGACAAGAGTTCAGAATTTTAAAGGTCTCAAGCAGAACCCGAGAATTTAGAGAGACTCCATCAAGTCTGAAGATCGAAGACTCTTTGCAATTCATAAGTTCAAGTGTTGAACACTTCTTGAAGACCAAACACTCTTCAAGACTTCAACTCTCCTTGAAGATCAAAGACTCTTCAGGACATCAACACTTCTTGAAGACCCAACACTCTTCAAGACTTCAACACTCCTTGAAGATCAAAGACTCTTCAGGACATCAACACTTCTTGAAGACTGAAGACTCCTTCAAGACTTGAAGACTTCAAGCTCCAAAAAATCCACTGAAGCCTCAGACTCGAGATCAAGCGTTCCAGTCCCCGAGTGAAACACGTTCACACACAAGAGAGAGAATTAGAGGATTAAAGTTAGAGATTGTACACCCACACACATATTACATCAATACAATATATTGTTTAATCCATGTGTCTCCATCTCCGAATTTACGTGTGAACAAATTGGCACGCCCAGTGGGACCATCTCTACCTCTCATCTCTCTCTCTTATCTCAAAACACAAGTGTAAACATGTCGTTCAAGACTTCTTCAATGGTCGCTGTCATGAACAAGTCTTACATGAGTTCTACTGCTCATTGTTGCTTCAATGAACTGACGTTGCAAGAAGATAAAGCTTCTATCGTTGCAGGCCAAGAAACAAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTATCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATAAAGGCGATTGAAGAAAAAGATTCTCAACTCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCACCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATGATCAGCCACAGTGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTTCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGTATCAGCCACCAAAATTTCAGCAGTTTGATGGAAAGGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGAGAGAATGCTGGTACTCGAGGGGACCTACTAGTCAAGCAGTTCGTTCGAACACTTAAGGGAAATGCTTTTGACTGGTACACTGATCTAAAACCTGAGTCAATAGACAGTTGAGAGGAATGCGAAAAAGAATTTTTGAATCGCTTCTACAGCACTAGACGAACCGTTAGCATGTTTGAGCTCACCAACACTAAACAACGAAAAGGTGAACTCGTTGTTAACTATATAAATCGCTGGAGAGCCATGAGTCTAGATTGCAAAGATCGCCTGACTAAACTCTCTTCCGTTGAGATGTGCATTCAAGGCATGCACTGGGAACTCCTCTATATCCTTAAAGGTATAAAACCTCGTACCTTTGAAGAACAAGCAACTCGTGCCCACGATATGGAGCTAAGTATTGCTAGTCGAGAAAACCAAGACCTTCTACTCCCTAACATGAGGAAAGAAGGAAGGAACGACGAAGAGACTATAAAAGAATCTATGGTTGTAAACACAACCTTTCCCAAGTCAATGATCCCAAGTATTGCAAGTATCATCGAGTTATTGGTCATCCAGTGGAAAGATGTTTCGTCCTAAAGGACTTAATTCTAAAACTAGCTATGGAAGGAAAAATTGAGCTTGACCTTGATGAAGTAGCTCAATCAAATCTTGCTACAATCAAAGAAAAGAGCAAGCATCAAAGAAAGAAAGATTTTAAGAAACTTCAACCCAAGAGGTAGAGAAGTAAAGAGTTTTCTCAACCTCGACAACCGGTGACTGTGAAGGAACTCTTCTCCAAAGCTTTCCACAAAAAGGAAAAAGAAAACTTTGCAACTTCTTATTGCATCGACGTAGAAGAAGTTGACAATTCCATGAAGGGTGAACAAAGGACTTCCGTCTTCGATCGCATTAAGTCTTCAACTGCTCGACCTTCGGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTTCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGACAGATAACTTAGATGTGAAATTGTTCAATGAAGTAGGCAGTGACAAGAAGCTTCAAAGTAGCATCCTGTCACGTATGAAGAGGAAGTTCTTTATTCTCATAAATACAGAAGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGATCTGATCAAGACCATGATGAAGATAAGGGCTTTTAAAATGTAAAAGCTCCTTATCGCAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGTGCAAAAAATTCTGAACTACGTTATGACTTGATCCCTATTCCTCAAGGGTACGTAGACAGCTTAAAGAAAACTTTAAGTTCAGTCTCTACAAATAAAAAAAAGAAAGTGCAACAAATATTGAAGCACGACAATATAAATTGAGGAAATTCATCACTAGTGGGGGCAACACAACAAATGGAAGTTGTGCACCATTATGAATGTGAAACTATGGGTTGGATGAATAAAAGAAGACTTCATTCCTCCAAATTTGATGTCTCGCTCGCCTCAAGTTCGGTGTTCCACTCACCCTAAGTTCGTTGTTCCCTCTTCCTCAAGTTTGAAGGTTCTTACACTGTACGTTGCTGCGTTGTTCTTTCTCCAAGTTCGAGGTTTCTTACGTGGCATGTTATGGCGTTGTTCCTTCTCCAAGTTTGAAGGTTCTCACGCTGCGCTGCTTTGCTATTCCTTCTCCAAGTTCGAAGCTTCTCACGATGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCTACTCTAGGCTGCGCTACTACGTTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGTTTCCTTCTCCAAGTTTGAAGGTTCTGACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGTTGTTCCTTCTCCAAGTTCAAAGGTCCTCATGCGCTATGCTACTGTTCCTTCTCCAAGTTCGAAGGTTTTCACGTGTTCTCATGTTGTTACGCTACAGCTCTAG

mRNA sequence

ATGGGTTGGGCCAAAACCAAAGTGATCGGGCTTTTGGCCCAACCCCCTACTCAGCCTCGGCCAAGGCCGAGCTCGTCCGACTCCATTTTTCCCCTACTGCCCTTGACCACCACGGCTCGACCTGGTTCATCCCGAAACGCCTCCGAACGCCAAGTAAACCCTAACGAAAGACACAGGTGGCCTACACCACACCGGTGTGCAGTGCTTCTGACTGGTCTCGCAGGTCGTCATCCCCGTCTTCAACAAATTCACTGCTGGTGTCACGTGAAGGTCAGGCCAAGAAACAAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTATCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATAAAGGCGATTGAAGAAAAAGATTCTCAACTCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCACCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATGATCAGCCACAGTGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTTCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGACTTCCGTCTTCGATCGCATTAAGTCTTCAACTGCTCGACCTTCGGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTTCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGACAGATAACTTAGATGTGAAATTGTTCAATGAAGTAGGCAGTGACAAGAAGCTTCAAAGTAGCATCCTGTTCTCACGCTGCGCTGCTTTGCTATTCCTTCTCCAAGTTCGAAGCTTCTCACGATGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCTACTCTAGGCTGCGCTACTACGTTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGTTTCCTTCTCCAAGTTTGAAGGTTCTGACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGTTGTTCCTTCTCCAAGTTCAAAGGTCCTCATGCGCTATGCTACTGTTCCTTCTCCAAGTTCGAAGGTTTTCACGTGTTCTCATGTTGTTACGCTACAGCTCTAG

Coding sequence (CDS)

ATGGGTTGGGCCAAAACCAAAGTGATCGGGCTTTTGGCCCAACCCCCTACTCAGCCTCGGCCAAGGCCGAGCTCGTCCGACTCCATTTTTCCCCTACTGCCCTTGACCACCACGGCTCGACCTGGTTCATCCCGAAACGCCTCCGAACGCCAAGTAAACCCTAACGAAAGACACAGGTGGCCTACACCACACCGGTGTGCAGTGCTTCTGACTGGTCTCGCAGGTCGTCATCCCCGTCTTCAACAAATTCACTGCTGGTGTCACGTGAAGGTCAGGCCAAGAAACAAGGGGGCATATACTAATGACAAGTTTCTTGTTAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTATCATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAGGAACACATCAACACCTTGATAAAGGCGATTGAAGAAAAAGATTCTCAACTCGCGCAACTAAAGAGCCAAATTGAGAACCAACATATCACCGAATCAAGTCAAACCCAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATGATCAGCCACAGTGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTATTTCAAACCTTATACTAAGAGGATTGATAACTTGAGAATGCCAATCGGGACTTCCGTCTTCGATCGCATTAAGTCTTCAACTGCTCGACCTTCGGTATTCCAAAGAATGAGTATGGCCACGACAGAAGAAGAAAATCAATGTGTGGTGTTCACCTCCACTCGACCTTCAGCTTTCCAAAGACTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTCGAAGAAAGACAGATAACTTAGATGTGAAATTGTTCAATGAAGTAGGCAGTGACAAGAAGCTTCAAAGTAGCATCCTGTTCTCACGCTGCGCTGCTTTGCTATTCCTTCTCCAAGTTCGAAGCTTCTCACGATGCGCTGCTTCCTTCTCCAAGTTCGAAGGTTCTCATGCTACTCTAGGCTGCGCTACTACGTTACTTCCTTCTTTAAGTTTGAAGGTTCCCACATTGCGCTGTTGTGCTGTTTCCTTCTCCAAGTTTGAAGGTTCTGACGCTGCGCTGCTTCCTTCACCAAGTTCGAAGGTTCTCACGCTGCGCTGTTTCGTTGTTCCTTCTCCAAGTTCAAAGGTCCTCATGCGCTATGCTACTGTTCCTTCTCCAAGTTCGAAGGTTTTCACGTGTTCTCATGTTGTTACGCTACAGCTCTAG

Protein sequence

MGWAKTKVIGLLAQPPTQPRPRPSSSDSIFPLLPLTTTARPGSSRNASERQVNPNERHRWPTPHRCAVLLTGLAGRHPRLQQIHCWCHVKVRPRNKGAYTNDKFLVKYNPLFEPDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIGTSVFDRIKSSTARPSVFQRMSMATTEEENQCVVFTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPRRKTDNLDVKLFNEVGSDKKLQSSILFSRCAALLFLLQVRSFSRCAASFSKFEGSHATLGCATTLLPSLSLKVPTLRCCAVSFSKFEGSDAALLPSPSSKVLTLRCFVVPSPSSKVLMRYATVPSPSSKVFTCSHVVTLQL

Homology

[Close]

BLAST of Spg005073 vs. NCBI nr
Match: KAA0061331.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK14685.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 5.9e-42
Identity = 133/355 (37.46%), Postives = 167/355 (47.04%), Query Frame = 0


Query: 105 LVKYNPLF------------EPDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDS 164
           ++K NPL+            E   DV+  MM    T E  MAEM+  +N L+K +EE+D 
Sbjct: 9   VLKENPLYDNSDSASSKSKKEAHPDVMFAMMANI-TAEAVMAEMERKVNFLMKVVEERDH 68

Query: 165 QLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQP-QCSASVASLSIQQLQDMITNC 224
           ++  L+ Q++ +   ESSQT V+K  DKGK  VQD+QP Q S SVASLS+QQL DMI N 
Sbjct: 69  EITTLREQMQTRETAESSQTPVVKATDKGKNAVQDNQPQQQSVSVASLSVQQLHDMIANS 128

Query: 225 IRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG----------------------------- 284
           IRAQYGGP+Q S +Y K YTKRIDNLRMP+G                             
Sbjct: 129 IRAQYGGPSQTSFMYSKSYTKRIDNLRMPLGIKSRPTSQAVRLKLKSKCFRVYDGVNKYQ 188

Query: 285 ------------------------------------------------------------ 338
                                                                       
Sbjct: 189 TTEGRANHRLHKPMESSKPGLQRQAHRTVCSRDVHLRSFLEDHPEEILEVTACHTASIVE 248

[Close]

BLAST of Spg005073 vs. NCBI nr
Match: TYK27123.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 6.1e-39
Identity = 122/356 (34.27%), Postives = 160/356 (44.94%), Query Frame = 0


Query: 117 DVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIK 176
           +++++M+T+  T E RMAE+++ +N L+K +EE++  +A LK+ I+++   ESS    IK
Sbjct: 5   NIMSVMVTDVDTSENRMAELEKKVNMLMKVVEEREYAIASLKNHIKSRDAAESSHKHTIK 64

Query: 177 NHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDN 236
           N DKGK  +Q+ QPQ S S+ASLS+QQLQ+MI N I+ QYGGP Q S LY KPYTK IDN
Sbjct: 65  NTDKGKAVMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTSSLYSKPYTKMIDN 124

Query: 237 LRMPIGTS---------------------------------------------------- 296
           LRMP G                                                      
Sbjct: 125 LRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDCISH 184

Query: 297 ------------------------------------------------------------ 338
                                                                       
Sbjct: 185 KKKGRRNKKIWNLKPIKGKDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVIACHVASIV 244

[Close]

BLAST of Spg005073 vs. NCBI nr
Match: KAA0063700.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 6.1e-39
Identity = 122/356 (34.27%), Postives = 160/356 (44.94%), Query Frame = 0


Query: 117 DVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIK 176
           +++++M+T+  T E RMAE+++ +N L+K +EE++  +A LK+ I+++   ESS    IK
Sbjct: 5   NIMSVMVTDVDTSENRMAELEKKVNMLMKVVEEREYAIASLKNHIKSRDAAESSHKHTIK 64

Query: 177 NHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDN 236
           N DKGK  +Q+ QPQ S S+ASLS+QQLQ+MI N I+ QYGGP Q S LY KPYTK IDN
Sbjct: 65  NTDKGKAVMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTSSLYSKPYTKMIDN 124

Query: 237 LRMPIGTS---------------------------------------------------- 296
           LRMP G                                                      
Sbjct: 125 LRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDCISH 184

Query: 297 ------------------------------------------------------------ 338
                                                                       
Sbjct: 185 KKKGRRNKKIWNLKPIKGKDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVIACHVASIV 244

[Close]

BLAST of Spg005073 vs. NCBI nr
Match: KAA0034095.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 8.0e-31
Identity = 76/163 (46.63%), Postives = 109/163 (66.87%), Query Frame = 0


Query: 86  WCHVKVRPRNKGAYTNDKFLVKYNPLFE------PDSDVVTIMMTETRTMEERMAEMQEH 145
           W  +   P+       +  + +YN L E      P  +++++M+T+  T E+RMAE+++ 
Sbjct: 43  WEQISKPPKGGIVIKENPAIDEYNSLSECSNEEVPQPNIMSVMVTDVDTSEDRMAELEKK 102

Query: 146 INTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQPQCSASVASL 205
           +N L+KA+EE+D ++A LK+ IE++   ESS T  +KN +KGK  +Q+ QPQ S S+ASL
Sbjct: 103 VNMLMKAVEERDFEIALLKNHIESRDAAESSHTHTMKNANKGKAIMQESQPQNSTSIASL 162

Query: 206 SIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG 243
           S+QQLQ+MI N I+ QYGGP Q   LY KPYTKRIDNLRMP G
Sbjct: 163 SVQQLQEMIANSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNG 205

[Close]

BLAST of Spg005073 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 1.0e-30
Identity = 81/151 (53.64%), Postives = 106/151 (70.20%), Query Frame = 0


Query: 105 LVKYNPLF------------EPDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDS 164
           ++K NPL+            E   DV+++MM +   +E  MAEM+  IN L+K ++E+D 
Sbjct: 56  VIKENPLYNDYDSASSRSLKEAHPDVMSVMMADV-AVETAMAEMERKINLLMKVVDERDH 115

Query: 165 QLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQP-QCSASVASLSIQQLQDMITNC 224
           ++A LK Q++ +   ESSQT V+K  DKGK  VQ++QP Q S SVASLS+QQLQDMITN 
Sbjct: 116 EIAALKEQMQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNS 175

Query: 225 IRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG 243
           IRAQYGGP+Q S +Y KPYTKRIDNLRMP+G
Sbjct: 176 IRAQYGGPSQTSFMYSKPYTKRIDNLRMPLG 205

[Close]

BLAST of Spg005073 vs. ExPASy TrEMBL
Match: A0A5A7V6H5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00040 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.9e-42
Identity = 133/355 (37.46%), Postives = 167/355 (47.04%), Query Frame = 0


Query: 105 LVKYNPLF------------EPDSDVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDS 164
           ++K NPL+            E   DV+  MM    T E  MAEM+  +N L+K +EE+D 
Sbjct: 9   VLKENPLYDNSDSASSKSKKEAHPDVMFAMMANI-TAEAVMAEMERKVNFLMKVVEERDH 68

Query: 165 QLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQP-QCSASVASLSIQQLQDMITNC 224
           ++  L+ Q++ +   ESSQT V+K  DKGK  VQD+QP Q S SVASLS+QQL DMI N 
Sbjct: 69  EITTLREQMQTRETAESSQTPVVKATDKGKNAVQDNQPQQQSVSVASLSVQQLHDMIANS 128

Query: 225 IRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG----------------------------- 284
           IRAQYGGP+Q S +Y K YTKRIDNLRMP+G                             
Sbjct: 129 IRAQYGGPSQTSFMYSKSYTKRIDNLRMPLGIKSRPTSQAVRLKLKSKCFRVYDGVNKYQ 188

Query: 285 ------------------------------------------------------------ 338
                                                                       
Sbjct: 189 TTEGRANHRLHKPMESSKPGLQRQAHRTVCSRDVHLRSFLEDHPEEILEVTACHTASIVE 248

[Close]

BLAST of Spg005073 vs. ExPASy TrEMBL
Match: A0A5D3DU03 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold478G00150 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.0e-39
Identity = 122/356 (34.27%), Postives = 160/356 (44.94%), Query Frame = 0


Query: 117 DVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIK 176
           +++++M+T+  T E RMAE+++ +N L+K +EE++  +A LK+ I+++   ESS    IK
Sbjct: 5   NIMSVMVTDVDTSENRMAELEKKVNMLMKVVEEREYAIASLKNHIKSRDAAESSHKHTIK 64

Query: 177 NHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDN 236
           N DKGK  +Q+ QPQ S S+ASLS+QQLQ+MI N I+ QYGGP Q S LY KPYTK IDN
Sbjct: 65  NTDKGKAVMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTSSLYSKPYTKMIDN 124

Query: 237 LRMPIGTS---------------------------------------------------- 296
           LRMP G                                                      
Sbjct: 125 LRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDCISH 184

Query: 297 ------------------------------------------------------------ 338
                                                                       
Sbjct: 185 KKKGRRNKKIWNLKPIKGKDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVIACHVASIV 244

[Close]

BLAST of Spg005073 vs. ExPASy TrEMBL
Match: A0A5A7V935 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold329G002200 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.0e-39
Identity = 122/356 (34.27%), Postives = 160/356 (44.94%), Query Frame = 0


Query: 117 DVVTIMMTETRTMEERMAEMQEHINTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIK 176
           +++++M+T+  T E RMAE+++ +N L+K +EE++  +A LK+ I+++   ESS    IK
Sbjct: 5   NIMSVMVTDVDTSENRMAELEKKVNMLMKVVEEREYAIASLKNHIKSRDAAESSHKHTIK 64

Query: 177 NHDKGKTTVQDDQPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDN 236
           N DKGK  +Q+ QPQ S S+ASLS+QQLQ+MI N I+ QYGGP Q S LY KPYTK IDN
Sbjct: 65  NTDKGKAVMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTSSLYSKPYTKMIDN 124

Query: 237 LRMPIGTS---------------------------------------------------- 296
           LRMP G                                                      
Sbjct: 125 LRMPNGYQPPKFQQFDGKGNPKQHVAHFIETCETAGTRGDLLVKQFVRTLKGNAFDCISH 184

Query: 297 ------------------------------------------------------------ 338
                                                                       
Sbjct: 185 KKKGRRNKKIWNLKPIKGKDEDFLQPRRSITLAEFLPRSFLEDHPEEILEVIACHVASIV 244

[Close]

BLAST of Spg005073 vs. ExPASy TrEMBL
Match: A0A5A7SY17 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00830 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 3.9e-31
Identity = 76/163 (46.63%), Postives = 109/163 (66.87%), Query Frame = 0


Query: 86  WCHVKVRPRNKGAYTNDKFLVKYNPLFE------PDSDVVTIMMTETRTMEERMAEMQEH 145
           W  +   P+       +  + +YN L E      P  +++++M+T+  T E+RMAE+++ 
Sbjct: 43  WEQISKPPKGGIVIKENPAIDEYNSLSECSNEEVPQPNIMSVMVTDVDTSEDRMAELEKK 102

Query: 146 INTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQPQCSASVASL 205
           +N L+KA+EE+D ++A LK+ IE++   ESS T  +KN +KGK  +Q+ QPQ S S+ASL
Sbjct: 103 VNMLMKAVEERDFEIALLKNHIESRDAAESSHTHTMKNANKGKAIMQESQPQNSTSIASL 162

Query: 206 SIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG 243
           S+QQLQ+MI N I+ QYGGP Q   LY KPYTKRIDNLRMP G
Sbjct: 163 SVQQLQEMIANSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNG 205

[Close]

BLAST of Spg005073 vs. ExPASy TrEMBL
Match: A0A5A7U5H1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001620 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 5.1e-31
Identity = 76/163 (46.63%), Postives = 109/163 (66.87%), Query Frame = 0


Query: 86  WCHVKVRPRNKGAYTNDKFLVKYNPLFE------PDSDVVTIMMTETRTMEERMAEMQEH 145
           W  +   P+       +  + ++N L E      P  +++++M+T+  T E+RMAE+++ 
Sbjct: 43  WEQISKPPKGGIVIKENPAIDEHNSLSERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKK 102

Query: 146 INTLIKAIEEKDSQLAQLKSQIENQHITESSQTQVIKNHDKGKTTVQDDQPQCSASVASL 205
           +N L+KA+EEKD ++A LK+ IE++   ESS T  IKN +KGK  +Q+ QPQ S S+ASL
Sbjct: 103 VNMLMKAVEEKDFEIALLKNHIESRDAAESSHTHTIKNANKGKAIMQESQPQNSTSIASL 162

Query: 206 SIQQLQDMITNCIRAQYGGPTQDSLLYFKPYTKRIDNLRMPIG 243
           S+QQLQ+MI N I+ QYGGP Q   LY KPYTKRIDN+RMP G
Sbjct: 163 SVQQLQEMIANSIKTQYGGPAQTFSLYSKPYTKRIDNMRMPHG 205

The following BLAST results are available for this feature:

BLAST of Spg005073 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061331.1	5.9e-42	37.46	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK14685.1 ty3-gyp...	[more]
TYK27123.1	6.1e-39	34.27	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0063700.1	6.1e-39	34.27	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0034095.1	8.0e-31	46.63	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_031742199.1	1.0e-30	53.64	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]

BLAST of Spg005073 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6H5	2.9e-42	37.46	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3DU03	3.0e-39	34.27	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7V935	3.0e-39	34.27	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7SY17	3.9e-31	46.63	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U5H1	5.1e-31	46.63	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Spg005073 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 133..167
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..59

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005073.1	Spg005073.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process