Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCAAACTCTACATCTTCATCCCTTGTCACTGCTTCCGTCACCTCCTCTCCACTGTTTCTCTTATCGAATATCTGCAACCTTGTGCCACTTTGCTTAGACTCAAGCAACTACGTTTTATGGAAATTTCAAGTTTCATCCATCTTGAAGGCTCATTCTCTATTTGGGCATATTGATGGTTCTCTTCCCAAACTGAACAAGTTCGTTCGTACATCAAAAAACACAACTGAGGACAGTACATCAACAGGTGCAGACACAACCGAGGTTAGTCCGGAATATACTCAATGGGTTTCTCGTGATCAAGCTCTCATCTGTTAGTTCTGCACCGTTATTAAACCCCTATGATCACGGATTTGAATCCGTTGTTGTTCTGGGTGTGATCTAACCCCTACGATCACGGATTACAACAATAACGGTTTAAAACCGTCATGAAACGCCTCCGTGATCTTTCATGTATAATCACAGATTGCAACAATAATGGTTTAAAACCGTGGTTGTTCTGGGTGTGATTGAACCCGTACGATGACGGATAACAACGATGACAGTTTAAAACCGACATCTTCGTCGACCCCTATGATAACGGTTTACAACAATGACAGTTTACAACCGACATATATGACTACATTAATGACGGTTTTAAAATGACATCTTTCCCTCAACACGTTTGATTACAGTACGTTATGATGACGTTTTATAACTGTTATTATAGTGTCATAAGATGATAGTTATAAACTAACATCTTTTCTCATACCACCAGCAACATATTTATTGTCATAAATAAATGTCACTTTATCATCCTCTGCTCTTGCACATGTTGTTGGATCTACATCTTCAAAGGATCTTTGGCTATCTTTAGAAAAACGCTACTCTTCAAATACAAGGTCCAATGTTCTTGAATTACGTTCAACTTTATACAAAATTAAGAAACTTTCGTCTGAATCCGTAGAGAAATATACTTGTCGAATCAAAGAACTCGTAGACATGCTTGCTGCAGCCTCTGTTTTCATTGATGAAGAAGAAGTATTAGTTCATACCTTGAATGGACTACCAACCGAATTCAATGCCTTCCGGACATCCATACGAACGCGTAGTGGTTCTTTATCTCTGGAAGAACTTCATGCCCTTCTCACTGCCGAAGAAAAATCTGTTCATGCCGCTTCTGTTCCTCAGATATCGGTGATTGCCATGGCTGCGTTTACCTCCCAGAATCCAGTGCCTAATTTTCAATCTGCGTCTCAAGTTTCGCGCAGAAGAGGACGACATGGTTTCCATTCACGTGGGAGAGGCGGTTTCAATATGCGAGTGAGCCCTAATTTCCAGCTGCAAATTTCATATGGGCCAAACGACCAAACATCTAAAATGGGCCCAATGGCCGAAATGTATATGGACCGCAAATGGGCTCCTTTTCACAGCAGACTTTTGGGCTTCAAAATGGACGTGGCATTCTTTGCTCAGGCTCCATTTCGGGTCAAATTA
mRNA sequence
ATGGCTTCAAACTCTACATCTTCATCCCTTGTCACTGCTTCCGTCACCTCCTCTCCACTGTTTCTCTTATCGAATATCTGCAACCTTGTGCCACTTTGCTTAGACTCAAGCAACTACGTTTTATGGAAATTTCAAGTTTCATCCATCTTGAAGGCTCATTCTCTATTTGGGCATATTGATGGTTCTCTTCCCAAACTGAACAAGTTCGTTCGTACATCAAAAAACACAACTGAGGACAGTACATCAACAGGTGCAGACACAACCGAGGATCTTTGGCTATCTTTAGAAAAACGCTACTCTTCAAATACAAGGTCCAATGTTCTTGAATTACGTTCAACTTTATACAAAATTAAGAAACTTTCGTCTGAATCCGTAGAGAAATATACTTGTCGAATCAAAGAACTCGTAGACATGCTTGCTGCAGCCTCTGTTTTCATTGATGAAGAAGAAGTATTAGTTCATACCTTGAATGGACTACCAACCGAATTCAATGCCTTCCGGACATCCATACGAACGCGTAGTGGTTCTTTATCTCTGGAAGAACTTCATGCCCTTCTCACTGCCGAAGAAAAATCTGTTCATGCCGCTTCTGTTCCTCAGATATCGGTGATTGCCATGGCTGCGTTTACCTCCCAGAATCCAGTGCCTAATTTTCAATCTGCGTCTCAAGTTTCGCGCAGAAGAGGACGACATGGTTTCCATTCACGTGGGAGAGGCGGTTTCAATATGCGAGTGAGCCCTAATTTCCAGCTGCAAATTTCATATGGGCCAAACGACCAAACATCTAAAATGGGCCCAATGGCCGAAATGTATATGGACCGCAAATGGGCTCCTTTTCACAGCAGACTTTTGGGCTTCAAAATGGACGTGGCATTCTTTGCTCAGGCTCCATTTCGGGTCAAATTA
Coding sequence (CDS)
ATGGCTTCAAACTCTACATCTTCATCCCTTGTCACTGCTTCCGTCACCTCCTCTCCACTGTTTCTCTTATCGAATATCTGCAACCTTGTGCCACTTTGCTTAGACTCAAGCAACTACGTTTTATGGAAATTTCAAGTTTCATCCATCTTGAAGGCTCATTCTCTATTTGGGCATATTGATGGTTCTCTTCCCAAACTGAACAAGTTCGTTCGTACATCAAAAAACACAACTGAGGACAGTACATCAACAGGTGCAGACACAACCGAGGATCTTTGGCTATCTTTAGAAAAACGCTACTCTTCAAATACAAGGTCCAATGTTCTTGAATTACGTTCAACTTTATACAAAATTAAGAAACTTTCGTCTGAATCCGTAGAGAAATATACTTGTCGAATCAAAGAACTCGTAGACATGCTTGCTGCAGCCTCTGTTTTCATTGATGAAGAAGAAGTATTAGTTCATACCTTGAATGGACTACCAACCGAATTCAATGCCTTCCGGACATCCATACGAACGCGTAGTGGTTCTTTATCTCTGGAAGAACTTCATGCCCTTCTCACTGCCGAAGAAAAATCTGTTCATGCCGCTTCTGTTCCTCAGATATCGGTGATTGCCATGGCTGCGTTTACCTCCCAGAATCCAGTGCCTAATTTTCAATCTGCGTCTCAAGTTTCGCGCAGAAGAGGACGACATGGTTTCCATTCACGTGGGAGAGGCGGTTTCAATATGCGAGTGAGCCCTAATTTCCAGCTGCAAATTTCATATGGGCCAAACGACCAAACATCTAAAATGGGCCCAATGGCCGAAATGTATATGGACCGCAAATGGGCTCCTTTTCACAGCAGACTTTTGGGCTTCAAAATGGACGTGGCATTCTTTGCTCAGGCTCCATTTCGGGTCAAATTA
Protein sequence
MASNSTSSSLVTASVTSSPLFLLSNICNLVPLCLDSSNYVLWKFQVSSILKAHSLFGHIDGSLPKLNKFVRTSKNTTEDSTSTGADTTEDLWLSLEKRYSSNTRSNVLELRSTLYKIKKLSSESVEKYTCRIKELVDMLAAASVFIDEEEVLVHTLNGLPTEFNAFRTSIRTRSGSLSLEELHALLTAEEKSVHAASVPQISVIAMAAFTSQNPVPNFQSASQVSRRRGRHGFHSRGRGGFNMRVSPNFQLQISYGPNDQTSKMGPMAEMYMDRKWAPFHSRLLGFKMDVAFFAQAPFRVKL
Homology
BLAST of Spg005068 vs. NCBI nr
Match:
KAA0061282.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative mitochondrial protein [Cucumis melo var. makuwa])
HSP 1 Score: 217.6 bits (553), Expect = 1.4e-52
Identity = 143/269 (53.16%), Postives = 169/269 (62.83%), Query Frame = 0
Query: 3 SNSTSSSLVTASVTSSPLFLLSNICNLVPLCLDSSNYVLWKFQVSSILKAHSLFGHIDGS 62
SN S SV +S LFLLSNICNLVP+ LDS+NYVLWK+QVSSILKAHSLFGHID +
Sbjct: 14 SNPIPESSSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDT 73
Query: 63 LPKLNKFVRTSKNTT----------------------EDSTSTGA-------DTTEDLWL 122
LP K + +S T D+ S+ A +++ LWL
Sbjct: 74 LPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALITLINDTLSSSALAHVVSSVSSKALWL 133
Query: 123 SLEKRYSSNTRSNVLELRSTLYKIKKLSSESVEKYTCRIKELVDMLAAASVFIDEEEVLV 182
SLEKRYSSNTRSN+L+LRS LY I K SES+++YT RIK LVD LAAASV +++EE+LV
Sbjct: 134 SLEKRYSSNTRSNILDLRSALYTINKNPSESIDQYTSRIKALVDKLAAASVSLEDEEILV 193
Query: 183 HTLNGLPTEFNAFRTSIRTRSGSLSLEELHALLTAEEKSVHAASVPQISVIAMAAFTSQN 242
HTLNGLP FNAFRTSIRTRSG++SLEELH LL +EE + S + AMAAF
Sbjct: 194 HTLNGLPAAFNAFRTSIRTRSGNISLEELHTLLISEETIIAKTSAIEAIPTAMAAF---- 253
BLAST of Spg005068 vs. NCBI nr
Match:
XP_016902970.1 (PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo] >KAA0039118.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK26994.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 204.5 bits (519), Expect = 1.3e-48
Identity = 127/238 (53.36%), Postives = 162/238 (68.07%), Query Frame = 0
Query: 1 MASNSTSSSLVTASVTSSPLFLLSNICNLVPLCLDSSNYVLWKFQVSSILKAHSLFGHID 60
M S SSS S+ +S LFLLS+ICNLVP+ LDS+NYVLWK+QVSSILKA+S FGHID
Sbjct: 1 MVSEPESSS--NPSIPTSTLFLLSDICNLVPIRLDSTNYVLWKYQVSSILKAYSFFGHID 60
Query: 61 GSLP---------------KLN----------KFVRTSKNTTEDSTS----TGADTTEDL 120
+LP K+N + + T NTT S++ G+ +++ L
Sbjct: 61 DTLPCPPKHLPFSTLGTNSKINPEYLQWLSHDQALITLINTTLSSSALAYVVGSVSSKAL 120
Query: 121 WLSLEKRYSSNTRSNVLELRSTLYKIKKLSSESVEKYTCRIKELVDMLAAASVFIDEEEV 180
WLSLEKRYSSNT+SN+L+L S LY +KK SES+++YT RIK VD LAAAS+ ++ E +
Sbjct: 121 WLSLEKRYSSNTQSNILDLTSALYTLKKTPSESIDQYTSRIKAFVDKLAAASISLENEGI 180
Query: 181 LVHTLNGLPTEFNAFRTSIRTRSGSLSLEELHALLTAEEKSVHAASVPQISVIAMAAF 210
LVHTLNGLP F+AFRTSIRTRSG++SLEELH LL +EE ++ AS + AMAAF
Sbjct: 181 LVHTLNGLPAAFHAFRTSIRTRSGNISLEELHTLLISEETTMTKASAIEAIPTAMAAF 236
BLAST of Spg005068 vs. NCBI nr
Match:
KAA8537769.1 (hypothetical protein F0562_027652 [Nyssa sinensis])
HSP 1 Score: 188.7 bits (478), Expect = 7.2e-44
Identity = 120/284 (42.25%), Postives = 172/284 (60.56%), Query Frame = 0
Query: 3 SNSTSSSLVTASVTSSPLFLLSNICNLVPLCLDSSNYVLWKFQVSSILKAHSLFGHIDGS 62
+NST+S+ T + + SP+FLLSNICNL+ LDSSNYV WKFQ+SSILKAHSL G+IDG+
Sbjct: 31 TNSTTSTSATPNPSQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGT 90
Query: 63 LPKLNKFVRTSK--------------NTTEDSTST---------------GADTTEDLWL 122
P NKFV+ + NT + + T G T+ + WL
Sbjct: 91 YPCPNKFVQDERGAATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWL 150
Query: 123 SLEKRYSSNTRSNVLELRSTLYKIKKLSSESVEKYTCRIKELVDMLAAASVFIDEEEVLV 182
+LE+R+S++TRSN+L+L+S L+ I K +S++ Y +IK+ D LA+ SV I++E++L+
Sbjct: 151 ALERRFSASTRSNILQLKSALHNISK-GKDSIDSYIQKIKQARDSLASVSVLIEDEDILI 210
Query: 183 HTLNGLPTEFNAFRTSIRTRSGSLSLEELHALLTAEEKSVHAASVPQISVIAMAAFTSQN 242
+ LNGLP E+NAF+TSIRT+S +++LEE++A+L EE+++ + S A + N
Sbjct: 211 YVLNGLPQEYNAFKTSIRTKSENITLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATN 270
Query: 243 PVPNFQSASQVS------RRRGRHGFHSRG--RGGFNMRVSPNF 250
PNF S S R RGR F +RG F SPNF
Sbjct: 271 YRPNFSSNRGYSPSNFSGRGRGRGKFSNRGGRMHSFGRFQSPNF 313
BLAST of Spg005068 vs. NCBI nr
Match:
KAA8524269.1 (hypothetical protein F0562_010692 [Nyssa sinensis])
HSP 1 Score: 188.7 bits (478), Expect = 7.2e-44
Identity = 120/284 (42.25%), Postives = 172/284 (60.56%), Query Frame = 0
Query: 3 SNSTSSSLVTASVTSSPLFLLSNICNLVPLCLDSSNYVLWKFQVSSILKAHSLFGHIDGS 62
+NST+S+ T + + SP+FLLSNICNL+ LDSSNYV WKFQ+SSILKAHSL G+IDG+
Sbjct: 31 TNSTTSTSATPNPSQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGT 90
Query: 63 LPKLNKFVRTSK--------------NTTEDSTST---------------GADTTEDLWL 122
P NKFV+ + NT + + T G T+ + WL
Sbjct: 91 YPCPNKFVQDERGAATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWL 150
Query: 123 SLEKRYSSNTRSNVLELRSTLYKIKKLSSESVEKYTCRIKELVDMLAAASVFIDEEEVLV 182
+LE+R+S++TRSN+L+L+S L+ I K +S++ Y +IK+ D LA+ SV I++E++L+
Sbjct: 151 ALERRFSASTRSNILQLKSALHNISK-GKDSIDSYIQKIKQARDSLASVSVLIEDEDILI 210
Query: 183 HTLNGLPTEFNAFRTSIRTRSGSLSLEELHALLTAEEKSVHAASVPQISVIAMAAFTSQN 242
+ LNGLP E+NAF+TSIRT+S +++LEE++A+L EE+++ + S A + N
Sbjct: 211 YVLNGLPQEYNAFKTSIRTKSENITLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATN 270
Query: 243 PVPNFQSASQVS------RRRGRHGFHSRG--RGGFNMRVSPNF 250
PNF S S R RGR F +RG F SPNF
Sbjct: 271 YRPNFSSNRGYSPSNFSGRGRGRGRFSNRGGRMHSFGRFQSPNF 313
BLAST of Spg005068 vs. NCBI nr
Match:
KAA8516701.1 (hypothetical protein F0562_016793 [Nyssa sinensis])
HSP 1 Score: 188.7 bits (478), Expect = 7.2e-44
Identity = 120/284 (42.25%), Postives = 172/284 (60.56%), Query Frame = 0
Query: 3 SNSTSSSLVTASVTSSPLFLLSNICNLVPLCLDSSNYVLWKFQVSSILKAHSLFGHIDGS 62
+NST+S+ T + + SP+FLLSNICNL+ LDSSNYV WKFQ+SSILKAHSL G+IDG+
Sbjct: 31 TNSTTSTSATPNPSQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGT 90
Query: 63 LPKLNKFVRTSK--------------NTTEDSTST---------------GADTTEDLWL 122
P NKFV+ + NT + + T G T+ + WL
Sbjct: 91 YPCPNKFVQDERGAATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWL 150
Query: 123 SLEKRYSSNTRSNVLELRSTLYKIKKLSSESVEKYTCRIKELVDMLAAASVFIDEEEVLV 182
+LE+R+S++TRSN+L+L+S L+ I K +S++ Y +IK+ D LA+ SV I++E++L+
Sbjct: 151 ALERRFSASTRSNILQLKSALHNISK-GKDSIDSYIQKIKQARDSLASVSVLIEDEDILI 210
Query: 183 HTLNGLPTEFNAFRTSIRTRSGSLSLEELHALLTAEEKSVHAASVPQISVIAMAAFTSQN 242
+ LNGLP E+NAF+TSIRT+S +++LEE++A+L EE+++ + S A + N
Sbjct: 211 YVLNGLPQEYNAFKTSIRTKSENITLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATN 270
Query: 243 PVPNFQSASQVS------RRRGRHGFHSRG--RGGFNMRVSPNF 250
PNF S S R RGR F +RG F SPNF
Sbjct: 271 YRPNFSSNRGYSPSNFSGRGRGRGRFSNRGGRMHSFGRFQSPNF 313
BLAST of Spg005068 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 45.8 bits (107), Expect = 9.9e-04
Identity = 30/106 (28.30%), Postives = 50/106 (47.17%), Query Frame = 0
Query: 86 DTTEDLWLSLEKRYSSNTRSNVLELRSTLYKIKKLSSESVEKYTCRIKELVDMLAAASVF 145
DT +W LE Y S T +N L L+ LY + + + L+ LA V
Sbjct: 79 DTARGIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVK 138
Query: 146 IDEEEVLVHTLNGLPTEFNAFRTSIRTRSGSLSLEELHALLTAEEK 192
I+EE+ + LN LP+ ++ T+I ++ L+++ + L EK
Sbjct: 139 IEEEDKAILLLNSLPSSYDNLATTILHGKTTIELKDVTSALLLNEK 184
BLAST of Spg005068 vs. ExPASy TrEMBL
Match:
A0A5A7UZE5 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00300 PE=4 SV=1)
HSP 1 Score: 217.6 bits (553), Expect = 7.0e-53
Identity = 143/269 (53.16%), Postives = 169/269 (62.83%), Query Frame = 0
Query: 3 SNSTSSSLVTASVTSSPLFLLSNICNLVPLCLDSSNYVLWKFQVSSILKAHSLFGHIDGS 62
SN S SV +S LFLLSNICNLVP+ LDS+NYVLWK+QVSSILKAHSLFGHID +
Sbjct: 14 SNPIPESSSNPSVPTSTLFLLSNICNLVPIRLDSTNYVLWKYQVSSILKAHSLFGHIDDT 73
Query: 63 LPKLNKFVRTSKNTT----------------------EDSTSTGA-------DTTEDLWL 122
LP K + +S T D+ S+ A +++ LWL
Sbjct: 74 LPCPPKHLPSSTLGTNSEINPEYLQWLSRDQALITLINDTLSSSALAHVVSSVSSKALWL 133
Query: 123 SLEKRYSSNTRSNVLELRSTLYKIKKLSSESVEKYTCRIKELVDMLAAASVFIDEEEVLV 182
SLEKRYSSNTRSN+L+LRS LY I K SES+++YT RIK LVD LAAASV +++EE+LV
Sbjct: 134 SLEKRYSSNTRSNILDLRSALYTINKNPSESIDQYTSRIKALVDKLAAASVSLEDEEILV 193
Query: 183 HTLNGLPTEFNAFRTSIRTRSGSLSLEELHALLTAEEKSVHAASVPQISVIAMAAFTSQN 242
HTLNGLP FNAFRTSIRTRSG++SLEELH LL +EE + S + AMAAF
Sbjct: 194 HTLNGLPAAFNAFRTSIRTRSGNISLEELHTLLISEETIIAKTSAIEAIPTAMAAF---- 253
BLAST of Spg005068 vs. ExPASy TrEMBL
Match:
A0A5A7T8B0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00680 PE=4 SV=1)
HSP 1 Score: 204.5 bits (519), Expect = 6.1e-49
Identity = 127/238 (53.36%), Postives = 162/238 (68.07%), Query Frame = 0
Query: 1 MASNSTSSSLVTASVTSSPLFLLSNICNLVPLCLDSSNYVLWKFQVSSILKAHSLFGHID 60
M S SSS S+ +S LFLLS+ICNLVP+ LDS+NYVLWK+QVSSILKA+S FGHID
Sbjct: 1 MVSEPESSS--NPSIPTSTLFLLSDICNLVPIRLDSTNYVLWKYQVSSILKAYSFFGHID 60
Query: 61 GSLP---------------KLN----------KFVRTSKNTTEDSTS----TGADTTEDL 120
+LP K+N + + T NTT S++ G+ +++ L
Sbjct: 61 DTLPCPPKHLPFSTLGTNSKINPEYLQWLSHDQALITLINTTLSSSALAYVVGSVSSKAL 120
Query: 121 WLSLEKRYSSNTRSNVLELRSTLYKIKKLSSESVEKYTCRIKELVDMLAAASVFIDEEEV 180
WLSLEKRYSSNT+SN+L+L S LY +KK SES+++YT RIK VD LAAAS+ ++ E +
Sbjct: 121 WLSLEKRYSSNTQSNILDLTSALYTLKKTPSESIDQYTSRIKAFVDKLAAASISLENEGI 180
Query: 181 LVHTLNGLPTEFNAFRTSIRTRSGSLSLEELHALLTAEEKSVHAASVPQISVIAMAAF 210
LVHTLNGLP F+AFRTSIRTRSG++SLEELH LL +EE ++ AS + AMAAF
Sbjct: 181 LVHTLNGLPAAFHAFRTSIRTRSGNISLEELHTLLISEETTMTKASAIEAIPTAMAAF 236
BLAST of Spg005068 vs. ExPASy TrEMBL
Match:
A0A1S4E4S1 (uncharacterized protein LOC107991968 OS=Cucumis melo OX=3656 GN=LOC107991968 PE=4 SV=1)
HSP 1 Score: 204.5 bits (519), Expect = 6.1e-49
Identity = 127/238 (53.36%), Postives = 162/238 (68.07%), Query Frame = 0
Query: 1 MASNSTSSSLVTASVTSSPLFLLSNICNLVPLCLDSSNYVLWKFQVSSILKAHSLFGHID 60
M S SSS S+ +S LFLLS+ICNLVP+ LDS+NYVLWK+QVSSILKA+S FGHID
Sbjct: 1 MVSEPESSS--NPSIPTSTLFLLSDICNLVPIRLDSTNYVLWKYQVSSILKAYSFFGHID 60
Query: 61 GSLP---------------KLN----------KFVRTSKNTTEDSTS----TGADTTEDL 120
+LP K+N + + T NTT S++ G+ +++ L
Sbjct: 61 DTLPCPPKHLPFSTLGTNSKINPEYLQWLSHDQALITLINTTLSSSALAYVVGSVSSKAL 120
Query: 121 WLSLEKRYSSNTRSNVLELRSTLYKIKKLSSESVEKYTCRIKELVDMLAAASVFIDEEEV 180
WLSLEKRYSSNT+SN+L+L S LY +KK SES+++YT RIK VD LAAAS+ ++ E +
Sbjct: 121 WLSLEKRYSSNTQSNILDLTSALYTLKKTPSESIDQYTSRIKAFVDKLAAASISLENEGI 180
Query: 181 LVHTLNGLPTEFNAFRTSIRTRSGSLSLEELHALLTAEEKSVHAASVPQISVIAMAAF 210
LVHTLNGLP F+AFRTSIRTRSG++SLEELH LL +EE ++ AS + AMAAF
Sbjct: 181 LVHTLNGLPAAFHAFRTSIRTRSGNISLEELHTLLISEETTMTKASAIEAIPTAMAAF 236
BLAST of Spg005068 vs. ExPASy TrEMBL
Match:
A0A5B7C9B1 (Retrotran_gag_3 domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_046931 PE=4 SV=1)
HSP 1 Score: 188.7 bits (478), Expect = 3.5e-44
Identity = 121/287 (42.16%), Postives = 175/287 (60.98%), Query Frame = 0
Query: 1 MASNSTSSSLVTASVTSSPLFLLSNICNLVPLCLDSSNYVLWKFQVSSILKAHSLFGHID 60
MA+ S +SS ++ T SP++LLSNICNL+ L LDS+NYV WKFQ+SSIL+AHSL G+ID
Sbjct: 1 MATQSNTSSSSISTSTQSPIYLLSNICNLITLHLDSTNYVSWKFQISSILRAHSLMGYID 60
Query: 61 GSLPKLNKFVR-------TSKN-------------------TTEDSTST---GADTTEDL 120
GSL KF+ T+KN T S T G T++++
Sbjct: 61 GSLNCPTKFIHDERGRITTTKNPDYHKWITYDQALMTLINATLSSSALTYVIGYSTSKEV 120
Query: 121 WLSLEKRYSSNTRSNVLELRSTLYKIKKLSSESVEKYTCRIKELVDMLAAASVFIDEEEV 180
W +LE+R+SS++R N+L+L+S L+ + K ++SV+ Y RIK+ D LAA SV I++E++
Sbjct: 121 WQALERRFSSSSRLNILQLKSNLHTLSK-GTDSVDLYVQRIKQARDSLAAVSVIIEDEDI 180
Query: 181 LVHTLNGLPTEFNAFRTSIRTRSGSLSLEELHALLTAEEKSVHAASVPQ---ISVIAMAA 240
L+HTLNGLP ++NAF+TSI TRS ++LEELH LL AEE+++++ SVP+ + V
Sbjct: 181 LIHTLNGLPVDYNAFKTSIHTRSQPITLEELHTLLKAEEQTLNSTSVPKSNSLPVFPTTM 240
Query: 241 FTSQNPVPNFQSASQVSRRRGRHGFHSRGRGGFNMRVSPNFQLQISY 256
SQ P + + R GR ++RGRG ++Q Y
Sbjct: 241 AASQTRAPTYYNRG----RGGRGRSYTRGRGRNYQNFGRSYQQNYGY 282
BLAST of Spg005068 vs. ExPASy TrEMBL
Match:
A0A5J5A0G3 (Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_010212 PE=4 SV=1)
HSP 1 Score: 188.7 bits (478), Expect = 3.5e-44
Identity = 120/284 (42.25%), Postives = 172/284 (60.56%), Query Frame = 0
Query: 3 SNSTSSSLVTASVTSSPLFLLSNICNLVPLCLDSSNYVLWKFQVSSILKAHSLFGHIDGS 62
+NST+S+ T + + SP+FLLSNICNL+ LDSSNYV WKFQ+SSILKAHSL G+IDG+
Sbjct: 31 TNSTTSTSATPNPSQSPIFLLSNICNLITTRLDSSNYVAWKFQISSILKAHSLIGYIDGT 90
Query: 63 LPKLNKFVRTSK--------------NTTEDSTST---------------GADTTEDLWL 122
P NKFV+ + NT + + T G T+ + WL
Sbjct: 91 YPCPNKFVQDERGAATAQINPEYQIWNTQDQALMTLLNATLSQTALSHVIGYSTSREAWL 150
Query: 123 SLEKRYSSNTRSNVLELRSTLYKIKKLSSESVEKYTCRIKELVDMLAAASVFIDEEEVLV 182
+LE+R+S++TRSN+L+L+S L+ I K +S++ Y +IK+ D LA+ SV I++E++L+
Sbjct: 151 ALERRFSASTRSNILQLKSALHNISK-GKDSIDSYIQKIKQARDSLASVSVLIEDEDILI 210
Query: 183 HTLNGLPTEFNAFRTSIRTRSGSLSLEELHALLTAEEKSVHAASVPQISVIAMAAFTSQN 242
+ LNGLP E+NAF+TSIRT+S +++LEE++A+L EE+++ + S A + N
Sbjct: 211 YVLNGLPQEYNAFKTSIRTKSENITLEEVYAMLKIEEQTIESVHKQNNSPPFPGAMMATN 270
Query: 243 PVPNFQSASQVS------RRRGRHGFHSRG--RGGFNMRVSPNF 250
PNF S S R RGR F +RG F SPNF
Sbjct: 271 YRPNFSSNRGYSPSNFSGRGRGRGRFSNRGGRMHSFGRFQSPNF 313
BLAST of Spg005068 vs. TAIR 10
Match:
AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 61.2 bits (147), Expect = 1.6e-09
Identity = 70/258 (27.13%), Postives = 117/258 (45.35%), Query Frame = 0
Query: 20 LFLLSNICNLVPLCLD--SSNYVLWKFQVSSILKAHSLFGHIDGSL-------------- 79
++ +SNI + +P+ LD SNY W+ + + + GHIDG+L
Sbjct: 10 IYGVSNIKSHIPVMLDIEESNYDAWRELFLTHCLSFDVMGHIDGTLLPTNANDVNWQKRD 69
Query: 80 --PKLNKFVRTSKNTTEDSTSTGADTTEDLWLSLEKRYSSNTRSNVLELRSTLYKIKKLS 139
KL+ + + + S T + T+ D+WL ++ ++ +N + L L S L + K +
Sbjct: 70 GIVKLSLYGTLTPKQFQGSFVT-SSTSRDIWLRIKNQFRNNKDARALRLDSEL-RTKDIG 129
Query: 140 SESVEKYTCRIKELVDMLAAASVFIDEEEVLVHTLNGLPTEFNAFRTSIRTRSGSLSLEE 199
V Y ++K+L D L V + + ++++ LNGL +F+ I+ R S ++
Sbjct: 130 DMRVADYYRKMKKLADSLRNVDVPVTDRNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDD 189
Query: 200 LHALLTAEEKSVHAASVP------QISVIAMAAFTSQNPVPNFQ--SASQVS-RRRGRHG 250
+L EE + A P S + A + PV NFQ +Q+ R RGR
Sbjct: 190 AATMLQEEEDRLKRAIKPNPTHVDHSSSSTVLACSEAPPVTNFQRSGGNQMGYRGRGRGN 249
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0061282.1 | 1.4e-52 | 53.16 | putative mitochondrial protein [Cucumis melo var. makuwa] >TYK09861.1 putative m... | [more] |
| XP_016902970.1 | 1.3e-48 | 53.36 | PREDICTED: uncharacterized protein LOC107991968 [Cucumis melo] >KAA0039118.1 ret... | [more] |
| KAA8537769.1 | 7.2e-44 | 42.25 | hypothetical protein F0562_027652 [Nyssa sinensis] | [more] |
| KAA8524269.1 | 7.2e-44 | 42.25 | hypothetical protein F0562_010692 [Nyssa sinensis] | [more] |
| KAA8516701.1 | 7.2e-44 | 42.25 | hypothetical protein F0562_016793 [Nyssa sinensis] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| P10978 | 9.9e-04 | 28.30 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7UZE5 | 7.0e-53 | 53.16 | Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A5A7T8B0 | 6.1e-49 | 53.36 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
| A0A1S4E4S1 | 6.1e-49 | 53.36 | uncharacterized protein LOC107991968 OS=Cucumis melo OX=3656 GN=LOC107991968 PE=... | [more] |
| A0A5B7C9B1 | 3.5e-44 | 42.16 | Retrotran_gag_3 domain-containing protein OS=Davidia involucrata OX=16924 GN=Din... | [more] |
| A0A5J5A0G3 | 3.5e-44 | 42.25 | Retrotran_gag_3 domain-containing protein OS=Nyssa sinensis OX=561372 GN=F0562_0... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT1G34070.1 | 1.6e-09 | 27.13 | CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE... | [more] |
