Spg005066 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005066
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Reverse transcriptase
Location	scaffold11: 11182704 .. 11186546 (-)
RNA-Seq Expression	Spg005066
Synteny	Spg005066

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGAGATATTGAGCCCCAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGTGGGCCCCACTACGACAAAGACGATGGGAGTGCTGGGTGGGCCCCACTACATCGTAGAGCTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTTGATTTGTCATGTTAGTTAAGATGTTTTATATAATCGATATGCCTTGTTGAATTTTAATAACGTACCTGCGATGTTTTTGAGAAAGCTTTTATCATTGCATGTTTATGTTTAATGCCTTGGTTGAGCAGCTTTATACGTTTAAAGTTTTATCACGTGTTCTGATTTCCGAATGTACAGTTTTAAATTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTCCCACTTTTCAGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTCCATATTGTAAATGTTTTGTAAGGATTGGATAATTTAGTCCTAGAGGTCGTGGTTGTATAAACCCCAGTTGTATATGTTTTTGGTTGTGATATCTATATCAGGTTATTTTCCAAACCAAGTTATGTCAGGGCTACACCTCATGTATGTTAAAAGGTTTTCAGGGATTCCGCTGTGTTGTGTTTCATGTGGAATATTTTATATCTAAGATTAGTACGTTTATCAGGTTCAACGTTACAGGAGGGTCAACGGGTATCGTTAGAGGAGGACGATGTTCGTTGGCTTCACGCCATCTTCCAAACTAAGCTAGCAGGTGGTCCGGGAGGGGGTGTGACAACGGGTCCTCTAATGAACAATTTGTTTATGGTCCAACCACTAAACAGAGTCCCTCTCAGGCCAATGAGAGGATGGGGCCCTTTGTTCAAGCCTCGGAGTCAGCACTTAAGGGAACAACCTCTCTACTGTCCCTGATTCAGGTAGGAGTGAATTTCGTCATGCAATACTATGTCCCCAGCTATCCATCTAGTCTTATCCCCAAAATGGTAGGCTTATTTAGCGACACTATTGGGCAACTCTCAACCATACAGATCAATGGATAATCCTAAACAAACAGGAGTTCATAGTAAGCTCAGAATTAAGATCGAGTTACCTAGGTCATCGTATGAAATAGTTAGTCTTAACAGTAAACGACGTTATAAAGTAAGAGTGACTTATTTCTCGGTCCTGTCTTGTGTAAACATCTTTTACACAGGATGCCCCTACTCGCATGTCTTTACATGAACGATCTAGGATCACGTTGTTTGCCTCATCCGCAAAGTAGGCCGCATCCATAGTGATACCAGGATAAGGTACCCAACCTTATCCATATACTATAGACCATTTAGGTTATATACTTAAACTTGATCCCTGTCTATATCCATGATATAGTTCGAGTATTTCATATTATAACCATGGATGTTTCTATTGGATTTAAGATATAAAACAAACGATTCACTGAATAACATCTTAATTATAAAAGGATTACAAAGCTTGAGTCTTAGGACATAAAACCCAACAGTTTTGGTACCGCTGGTCGGAGCGGTGCTAACTTGTTAATCGACAACCCGGATCAAAGTGAATTTACATTCACAGACTCGGGCGCATAGGTGTCAAAACAAATTTATAGTCCACGGTCACCAAGCTACCTTGTAGTAGTAGTGGTCGGGGTCGATCACAGGGAAGAGCTGGTTCACTCCTAATCTCTTATGTGTTGTGGGGTGGTAAAGAAAAGGGGGTTTGAGATGGATGGTGAAAATTGTGGGCGAAGGAAAGATGTAAGAATGTAAATTGACAGAAAGTCAGAGGATAAGAAGATAAACTGACAGAAAATTAAATGACAGAAAAGTAAATAACGGAAAAGTAAATGGGAAGGTTGGTCAATCTCACCTTGCCGCTCGTTGAAGCTGAAGACACTCGGGATCAATACATTTACTTTTTTACTCATTGATTAGCAGATAATGATTTATATGCATGCTGTCTATAGGTACTCTAAATCAATTGACTCGATCCCAACGTCCATCGATTCAATTACTAGCTACTAATCAACTAACCTCACGAACCCGTCAAGTTAATTAATGAAGCAACTGCGTTAAGAACTAGATACCCCTAGAGCGCTAACCCATCGGACCCACTGAGCTAACATGCAATTAATCAATAAACTAACTTGGCCACAGTCAATAAAGTAATCAATCGTTGCTCTAGACTAGAACACTCATAATCAACTAGAGAAACATCTAAATAATCACAAGTATCGATTTAGACTCCTAGATCTATCGTATCAGCAACAAAGTCAGAGTCTGCTCTTGGTACCCGTGCTCATGAATCAAACTAACGCTAACTACTGAACTAACCATCCATTAGCTAAATGGAAATCAATTCTTTAGCGAACTATTAACATACGAGTTGCGAGTTAGGGCGTCAATCTAACCTATTGTGCATGCTAATTATAAAAGTGGGAATCTAAAATCACGAACAACCAATAAATCATGCATAAAGTTCAAGAATTTCAAGATAATCAAAGAATAAGTTCAGATTGCTCATAAATCTCATAAAAATACAAATGTACTTACAATCCCGAGGTCCCAACTACAATGAACGGTGCTTAGACGGCCATAGACCAACCTAATCTAAGCCCAAGGCTCGAGAAACCAACCTAATCTACCTAGAAAATGTAAAATACAGGAGAAAAGTGGAGAAATCCGAGAGTAAGCGGCTGCTAAACACTCCAATCGACCCTCTCTTCCCTTCTAAAACTCTCCACGCTGCTGCCCTAATTGCAGCCATGGTATTTAAAAAGTGGAGAAATCCTAATTTTATCGCGCCTCCGCTTCCGAGGCATCGAGACGCAGGGAGATGGCGTCTCGACGCCATCTCTCAGGTCCTCAAGAATTGCTGCTTCAAAACTTGATCTGTTTCGCGCTGATTTTGAGTCCCGAGCGTTCCATTAAGGTCTTTTCACCACCTCGGCATCCCATAAACTTCAAGAGGATCAAAACCGCGCTAAAATCCTCGAATTAACACCAAAATTGAAAATGGACTCCGTTGAAGCACTTGATACAAAATTCCTACAAAACATAACTTTAAGCGAAATAATTATCGTAAAACTAACAAGATTAAACACAAATAATCATGGGCAATCAGGCCCCATCAACCGCCAATCCTAAAAAAAAAAACAAAACAATCAAACAAGAATCAAAAGCAACTAATCAAAATAACCTAAACTAAGAAAAAGAAATGACAGAAAGAAGTAACCTATTTGTTGCAAATGTTTAAGGTCGTTTGCTCGACCAGATTCTCCTTGATCCTCATCCGAAATCAACCTCTTTGATTTTGAGAACATCATTTTTCTTCCTCTTCTTTTTGATCAACTCCAGCATAGATAAATTAAAGTTGCACACGGTGTGCACAACATAAGAATATTCAAACGAATCATCCGACAACCTTAACATGCTAATTAGAACAACTTTACTCTTAGCAACAAAATGATCAATGATTGGAATTACTAAGCCTAAATCATGTGAATCATTGTGGTAAAACTTTGGAGGAACAAAAATGGTATAATACTAGTCGAAGCTACCTCAACATGCTGAACTCTTGCCTATACTAGCATGCATGGTGAATCACATGCATCAAGCTCAGAATCTAAAGAAAATTCAAGCTCAACTTCACCGACCTCATGATGATTTTCTTCTGATTTACCTTCTTGCTGCTTTGGAATCTAGACTTCTAGCTCATGAAGAGAGGTGGCTATTTTAG

mRNA sequence

ATGACTGAGATATTGAGCCCCAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTACAGGAGGGTCAACGGAGTCCCTCTCAGGCCAATGAGAGGATGGGGCCCTTTGTTCAAGCCTCGGAGTCAGCACTTAAGGGAACAACCTCTCTACTGTCCCTGATTCAGGATCACGTTGTTTGCCTCATCCGCAAAGTAGGCCGCATCCATAGTGATACCAGGATAAGGAGAAAAGTGGAGAAATCCGAGAGTAAGCGGCTGCTAAACACTCCAATCGACCCTCTCTTCCCTTCTAAAACTCTCCACGCTGCTGCCCTAATTGCAGCCATGGTATTTAAAAAGTGGAGAAATCCTAATTTTATCGCGCCTCCGCTTCCGAGGCATCGAGACGCAGGGAGATGGCGTCTCGACGCCATCTCTCAGTCGAAGCTACCTCAACATGCTGAACTCTTGCCTATACTAGCATGCATGGTGAATCACATGCATCAAGCTCAGAATCTAAAGAAAATTCAAGCTCAACTTCACCGACCTCATGATGATTTTCTTCTGATTTACCTTCTTGCTGCTTTGGAATCTAGACTTCTAGCTCATGAAGAGAGGTGGCTATTTTAG

Coding sequence (CDS)

ATGACTGAGATATTGAGCCCCAGGCTATATGGTACCGTGTGCACACAGGTAGAGATCGAGCTCCCGATGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGATCAAGCTCCAGTTCAACGTTACAGGAGGGTCAACGGAGTCCCTCTCAGGCCAATGAGAGGATGGGGCCCTTTGTTCAAGCCTCGGAGTCAGCACTTAAGGGAACAACCTCTCTACTGTCCCTGATTCAGGATCACGTTGTTTGCCTCATCCGCAAAGTAGGCCGCATCCATAGTGATACCAGGATAAGGAGAAAAGTGGAGAAATCCGAGAGTAAGCGGCTGCTAAACACTCCAATCGACCCTCTCTTCCCTTCTAAAACTCTCCACGCTGCTGCCCTAATTGCAGCCATGGTATTTAAAAAGTGGAGAAATCCTAATTTTATCGCGCCTCCGCTTCCGAGGCATCGAGACGCAGGGAGATGGCGTCTCGACGCCATCTCTCAGTCGAAGCTACCTCAACATGCTGAACTCTTGCCTATACTAGCATGCATGGTGAATCACATGCATCAAGCTCAGAATCTAAAGAAAATTCAAGCTCAACTTCACCGACCTCATGATGATTTTCTTCTGATTTACCTTCTTGCTGCTTTGGAATCTAGACTTCTAGCTCATGAAGAGAGGTGGCTATTTTAG

Protein sequence

MTEILSPRLYGTVCTQVEIELPMPDTLPTSAESSRSSSSSTLQEGQRSPSQANERMGPFVQASESALKGTTSLLSLIQDHVVCLIRKVGRIHSDTRIRRKVEKSESKRLLNTPIDPLFPSKTLHAAALIAAMVFKKWRNPNFIAPPLPRHRDAGRWRLDAISQSKLPQHAELLPILACMVNHMHQAQNLKKIQAQLHRPHDDFLLIYLLAALESRLLAHEERWLF

Homology

[Close]

BLAST of Spg005066 vs. NCBI nr
Match: KAA0062407.1 (uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK26574.1 uncharacterized protein E5676_scaffold313G001830 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 5.2e-07
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQVEIELPMPDTLPTSAESSRSSSSSTLQ 44
          MTEILS RLYGTVCTQV+IELPMPDTLPTSAESS S+ ++ L+
Sbjct: 1  MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLE 43

[Close]

BLAST of Spg005066 vs. NCBI nr
Match: TYK27998.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-06
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ 44
          MTEILSPRLYGTVCTQ                 VEIELP+PDTLPTSAESS S+SS+ L+
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

[Close]

BLAST of Spg005066 vs. NCBI nr
Match: KAA0066851.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-06
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ 44
          MTEILSPRLYGTVCTQ                 VEIELP+PDTLPTSAESS S+SS+ L+
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

[Close]

BLAST of Spg005066 vs. NCBI nr
Match: TYK11693.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 55.5 bits (132), Expect = 7.1e-04
Identity = 34/57 (59.65%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSS 41
          +TEILS RLYGTVCTQ                 VEIELP+PDTLPTSAESS+S+S S
Sbjct: 14 VTEILSLRLYGTVCTQVIFLLSTLSVLHDNDAVVEIELPVPDTLPTSAESSKSNSRS 70

[Close]

BLAST of Spg005066 vs. ExPASy TrEMBL
Match: A0A5A7V638 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001830 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.5e-07
Identity = 34/43 (79.07%), Postives = 39/43 (90.70%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQVEIELPMPDTLPTSAESSRSSSSSTLQ 44
          MTEILS RLYGTVCTQV+IELPMPDTLPTSAESS S+ ++ L+
Sbjct: 1  MTEILSLRLYGTVCTQVKIELPMPDTLPTSAESSESNFNTWLE 43

[Close]

BLAST of Spg005066 vs. ExPASy TrEMBL
Match: A0A5D3DX39 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G002140 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-06
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ 44
          MTEILSPRLYGTVCTQ                 VEIELP+PDTLPTSAESS S+SS+ L+
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

[Close]

BLAST of Spg005066 vs. ExPASy TrEMBL
Match: A0A5A7VMG9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G002220 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.8e-06
Identity = 37/60 (61.67%), Postives = 41/60 (68.33%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ 44
          MTEILSPRLYGTVCTQ                 VEIELP+PDTLPTSAESS S+SS+ L+
Sbjct: 1  MTEILSPRLYGTVCTQVIFPLSTLSVLRDNDAVVEIELPVPDTLPTSAESSESNSSTWLE 60

[Close]

BLAST of Spg005066 vs. ExPASy TrEMBL
Match: A0A5D3CIF4 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold304G00010 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 34/57 (59.65%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 1  MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSS 41
          +TEILS RLYGTVCTQ                 VEIELP+PDTLPTSAESS+S+S S
Sbjct: 14 VTEILSLRLYGTVCTQVIFLLSTLSVLHDNDAVVEIELPVPDTLPTSAESSKSNSRS 70

[Close]

BLAST of Spg005066 vs. ExPASy TrEMBL
Match: A0A5A7THH5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00290 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-03
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 0


Query: 1   MTEILSPRLYGTVCTQ-----------------VEIELPMPDTLPTSAESSRSSSSSTLQ 44
           MTEILS RLYGTVCT                  VEIELP+PD LPTSAESS S+SS+ L+
Sbjct: 96  MTEILSLRLYGTVCTHVIFQLSTLSVLRDNDVVVEIELPVPDRLPTSAESSASNSSTWLE 155

The following BLAST results are available for this feature:

BLAST of Spg005066 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062407.1	5.2e-07	79.07	uncharacterized protein E6C27_scaffold154G002090 [Cucumis melo var. makuwa] >TYK...	[more]
TYK27998.1	5.8e-06	61.67	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0066851.1	5.8e-06	61.67	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK11693.1	7.1e-04	59.65	gag protease polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Spg005066 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005066 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V638	2.5e-07	79.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DX39	2.8e-06	61.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7VMG9	2.8e-06	61.67	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold27...	[more]
A0A5D3CIF4	3.4e-04	59.65	Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7THH5	1.0e-03	56.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Spg005066 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..55
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..55

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005066.1	Spg005066.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0043170	macromolecule metabolic process
biological_process	GO:0006807	nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process