Spg005062 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005062
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	tRNA-splicing endonuclease subunit Sen54
Location	scaffold11: 13052995 .. 13057626 (-)
RNA-Seq Expression	Spg005062
Synteny	Spg005062

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAGGGGATTAATGTTTTGTTCTTCTTCTTCTCAGCCGGCAGTTCACGATATCCCCTCTCCCTTCACTCTCGTTTTTCCTCTCTCCTTCAGCCGCCTCTCCCTCTCACGCTCGCCTTCAGTCACCAACTCGCCGGCCTCTCCCTCTGCTTTGTGGCGTCGACGGCGATCCTCCGATAGAAGTGAAGCTCCAGCCGCCGCCGTAGTTACAGTTCGCAGCCACGTAGCCTGCTGCCGCCGCCCTTACAGCCGTCGTCTGAATCTTCGTCCAAGCACCTCGAGCCGCAGAAGCCGTGTTCGCTTTGGGTGCTTATTAGGTGAGTTTAATTAGATTCTTGGTCCGATTGAAGGTTAGTTGTTTTCTTAAGAAGTGAAATCAACCCATATGTTTCTCGAACAGCTTTCAGACTATGTTTTTTCTCTGGCATTTAAATTCAGGATTTAGCGTTGTTTAAGTTGCTGTCCAGTGAGGGGTTGGAGCATTTGGGTGAGTTTTCTTATACGTTGAGTGCCAATTAGAATATTTTTGTTAATTGGAGTTGACCCATTCCTTATTGGACTCGTTTTAGAGTTACCCATCCAATTTCGAGTTATAATTGCAGATTTTCGCTCATTCGAGTACTGTCCAGCAAGCTTTTGAGTCGTTTCAACTGGATTTTGTAGGTAAGAGTTGTACTAGACTTTCTCTATTATGTAAGTGAAGTCTTTGAAGTTTAAGGAAAGGATTGATTAGGCAAATTTCTGGTTTCAAATCTATCTTGCCAAGAGGAGTATTTATTTTCTAGAAAATATTTTTGTAGGTTGGATGAGGAGGATTAAGCGATTTGATTATTTTACTCATAAGCCAGGTAAGCGGCTTTATTGTTGAAAATTTCTAAACTTCATGTGTTTCATGAGTTGTTTTAATATGTATATGTTTATGCTAAATTGTTAAAGTATGAAAGTTATTATGGACCGTCTGCATATGTTGAGTTTTTTTTGAAATTTTCTAAATTGGTGGTATCTTGAAAATTTCGTATATTATGAGTTTAAATGTCCTTTGAGTTTTTTTCTTAGATTCCGAAAGGGTACATGAAATTGATGTACTTCAAGAGGTGCCTACACAAGACTTAGGACATGAATTGATGTACTTGAGTCGAGGTTCGTGGAATTGACGTTCCCCCATAGGAGGCACATGAAATGATGTGTCTAAGATATACATGAAATTGATGTATATCCCATTAATAAGAAGTTTACAGAGGGAAAATAGCCACCAAAGGCACATCGGGTGATTGATCGAGCTTGCTGAAATAGCCATGGGGGTCTAGAGAGCATTGTTTTCGTTGTTTAAGCTTCCGCACTCAAAGTTATATTTTAGATTTCTTATTTGATTTATGCTTGACTTCATACTTTAGAGGCCGTGAAAAGTATTTCAAGTTTGTGACTTTGTTTGATCCTGGGATCCTGTTTATCTTTTGTTTTGAGGTGTTGTTTACTTCATTTTTATTTTGAAATATAAATGTTCTTTAAATCTTGTGGGCTTCCATAACATGCATGAGTATTGAACCAATTTGTTGTTGTTAGAGTCGGGTTCTTACATCTAACTTAATCTCTGACAAATTTCTCCCTCTTGCGGTTCTACCCCAGTCTTCCTTATTCCGGCATAAGAAAGAGAAGATAATCGTAATTGTCTTGTTGAATAAACTATTACCAAATGAAATTTCAGAATTATGAGTCATGTTACATTAATATTTAGCAATTTTAGTAGTTTTGGTTGTTATCTCCACGTTTACATAGTTCGATACCATGTCCATTCCCTGAGGAGTTTTGATATTTGAGTAGGAGTTCTCTGATGGAGGCTAGAGATTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGATGACATTTACGAGCAAGACATGAAAGATGAAGAAGAATGTCTCTGCGCATCTGGGTACATGCGCAAGTTGCAATTTAGGTTGAGAATTTAAAGAATTTAGACTCCTCCAAATCCTTCAATAGGAGGATGCTATTTGCTTGTTATTAGTAAGTGTGAGTTTCAATATTTTATCTGTCTCCAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGTAGCCTTTGGACGACAACTGGCATTGTACGTTGTGGCAAGATTTATTGTTCCATTGAGGAAACTTTGTAGGTTAAACTATGATTTTATTATGGTTTGTTATCCTCACTGTTTTTGACATCGATCATCACATATTTGGGGAGTTATTCTCTTTCACATTGTCTTAATGTGGTTACTATAGAATAGGGTAATATCATGAAAAAGAAAAGAAATTCGAAGTGTACTCAGAAGCACTAGCCTTTTGTTGTCTTTTTGGGGCAATTACCTTGGTTGCCTTTCAGTCAGTTTTTTTTCCTCGCATTTGGTCGTCTTTTGGGGCTTCATTTAGAACATTACATTATATGAAGGGAAGGAATTCAAACTCACAATGTACTCGGAAGCACTAGCCTTTTGTTGTCTTGGTAAAGAAATGGAATAAATCATTTTAAGTACCTTTAAGTAAGTTTTTTTTTCCCTATCATTCTCTCTTGAAAATAAGTAGCATCAATGAAATTTTATTAAGCTTATTTGTGTCCAACTCTATGATTCATTTTATGTATCACTTATTTTTCTTTCTATTTAAATATATACATCTATTGTTTACTTCACTTGGGCAATGTTTCTTAATCTCTTGTTTTAGGAAAGTTAGAAGTACGTTGCCTTAAAGTGTGCCTTGGGCTTTGTAAATGTTGATTGTAATATGAACCTCTGCTGAAAAACAGAGTTATACTTTGAGCAGAAAATAGCCTTCTACTTTTTTTGTTTTGTTTTTTAAAATAGAGATATTAAGGATCATATTCTCTTTTCTGACATTCAGATGGCAATTTTTATGCATGCTATCAAACATTCTTTTCTATGTTTTCAGGTTCTTATTGAAGTTGGGGCCTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTTTGAAAGATGTATATAAGAAGGTAGCTGAAGGAAAGAGCGGATGTCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTTCATTGTTGGAAAGCATAAAGTTCCTTGGTCTGTGAAGAGTGTTAGGAATAGCAGTGAAATTTCTTCTCGAAGTTCTATTGAAAACAAAGGAGCGTCAGATCTTGAATCAGAAGATGAGAGGTCGATCTCCGAACTATGGATGCCATTCAGCTTGGTGAAGTGACACCCATTTTGATGTTTTCTTCCACATAGCAAGTTTAGAAAGTCTTCTCCTGGTGACCCAAATTTTATGGTCTGCTTGACTAGGTAAGTTCACTTGTTATCAAAAGTCCATGCAACTTCCTTCCAAGACTGTCTGGTCAGGTTATTTGTTTGAATACTTTTTTGTTTTCTGTTTTTTTTTTTTTTGGTTTTTTTAGTTTCTATAAACACTTGGTAAGGCATAATTAAAGTGACTTGCACCTGACCAACTTTAATTCTGTAACGAAGAGGACAATAGTTTTGACCATAAGATAGTGAGTGCACCATATCATTTGTGTTCAAAGTTTTGTAAACTGCACTTGCAGTCTTGTTTGGAATGACTTTCTAAGTGTTTGTTAGTATTTAGAAACAAACATGTAAACACGCGGAAAGTCATTACAAACATGCCATTAGTGTGTGTTTGGCCTTGTTTTTAAAGTGAATATGTAGTATGAAATCGTTTTTTTTAAAGAAATTTAGTTAAATGCTTCCTCTATAAGCACTGTAGGTGTATTTTTTTTTTTTTTTTTTTTTTTTTATCTACTTTTAGAATTCTAAAACTACTTTTATAAAATACTTTTAATTGGTCAAAAACGCTTTTTACTGCTCTAAAATTTTAACCAAAAGCCTACCAATTTTTAAACAGCACTTTCAGTCATCCACAAGGACTTTAAAAGGCATAAACAAACACTTTGACTTAGATTAGTAATCAATCCTATAGTTACTAATTGTTTACGCCATGTATCAACTTTATTTTTAGCCTTCTGTGACCCATTCAGTTGCATTCTTGAAATAACACCAATATGAGGTCAATAGTAGGCTTCTAACTCGCGTCGTTTCTTTCTTCTGGGAGATTCTATGCACTACTTAGAATTTATCTGATCCTTTAATTACTGTGGTATAATTTTTTTTTATAGGGGATATCCACCTCCAAAAAAAGATATTGAAGTCCTTGAGAGAACATCCAGAGGCATTCCAATGAAATATTGTCATGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGGTGGAGCTCCCCGTTTTACCCTGACATTGTTGTGGATTGCTCTGCCATTGAAATATTTTATGTTTCCAGATGTGTAGAATATAGTGAATCCAGAGAAAGTGTTTGGTGTGCAATTTGATAACTTGAAAAGTACTATTCTTAAATCTGACTTTATGCGTCGTTTCCAATATTTTCAGATTTTAAATTGGGAAAATTGAAAACATGAGATCAATTTTAATGAAAAAGTGAATTCTACCTCCCAACTTTGGAAAGAAGGCGGTGGGTTTTTTTAACCTGAGTTACAATCGGGGGTTCTTC

mRNA sequence

atgttttgttcttcttcttctcagccggcagttcacgatatcccctctcccttcactctcgtttttcctctctccttcagccgcctctccctctcacgctcgccttcagtcaccaactcgccggcctctccctctgctttgtggcgtcgacggcgatcctccgatagaagtgaagctccagccgccgccgtagttacagttcgcagccacgtagcctgctgccgccgcccttacagccgtcgtctgaatcttcgtccaagcacctcgagccgcagaagccgtgttcgctttgggtgcttattagtgaggggttggagcatttggattttcgctcattcgagtactgtccagcaagcttttgagtcgtttcaactggattttgtaggttggatgaggaggattaagcgatttgattattttactcataagccaggccgtgaaaagtatttcaagtttgtgactttgtttgatcctgggatcctgtttatcttttgttttgaggtttctctgatggaggctagagattgggaaagctcttcaggaggagctagtggtgatgatgacatttacgagcaagacatgaaagatgaagaagaatgtctctgcgcatctgggtacatgcgcaagttgcaatttaggaagcatgcttcaactgctcgatggaatgatcaaatgggaatggcagaagttttagagaacaagggtagcctttggacgacaactggcattgttcttattgaagttggggccttacatcttctggatcatgataattcaagtctttctttgaaagatgtatataagaaggtagctgaaggaaagagcggatgtctttgggagcagtttgaggtttataggcacctcaaatctcTTGGTTTCATTGTTGGAAAGCATAAAGTTCCTTGGTCTGTGAAGAGTGTTAGGAATAGCAGTGAAATTTCTTCTCGAAGTTCTATTGAAAACAAAGGAGCGTCAGATCTTGAATCAGAAGATGAGAGGTCGATCTCCGAACTATGGATGCCATTCAGCTTGGTGAAGGGATATCCACCTCCAAAAAAAGATATTGAAGTCCTTGAGAGAACATCCAGAGGCATTCCAATGAAATATTGTCATGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGGTGGAGCTCCCCGTTTTACCCTGA

Coding sequence (CDS)

ATGTTTTGTTCTTCTTCTTCTCAGCCGGCAGTTCACGATATCCCCTCTCCCTTCACTCTCGTTTTTCCTCTCTCCTTCAGCCGCCTCTCCCTCTCACGCTCGCCTTCAGTCACCAACTCGCCGGCCTCTCCCTCTGCTTTGTGGCGTCGACGGCGATCCTCCGATAGAAGTGAAGCTCCAGCCGCCGCCGTAGTTACAGTTCGCAGCCACGTAGCCTGCTGCCGCCGCCCTTACAGCCGTCGTCTGAATCTTCGTCCAAGCACCTCGAGCCGCAGAAGCCGTGTTCGCTTTGGGTGCTTATTAGTGAGGGGTTGGAGCATTTGGATTTTCGCTCATTCGAGTACTGTCCAGCAAGCTTTTGAGTCGTTTCAACTGGATTTTGTAGGTTGGATGAGGAGGATTAAGCGATTTGATTATTTTACTCATAAGCCAGGCCGTGAAAAGTATTTCAAGTTTGTGACTTTGTTTGATCCTGGGATCCTGTTTATCTTTTGTTTTGAGGTTTCTCTGATGGAGGCTAGAGATTGGGAAAGCTCTTCAGGAGGAGCTAGTGGTGATGATGACATTTACGAGCAAGACATGAAAGATGAAGAAGAATGTCTCTGCGCATCTGGGTACATGCGCAAGTTGCAATTTAGGAAGCATGCTTCAACTGCTCGATGGAATGATCAAATGGGAATGGCAGAAGTTTTAGAGAACAAGGGTAGCCTTTGGACGACAACTGGCATTGTTCTTATTGAAGTTGGGGCCTTACATCTTCTGGATCATGATAATTCAAGTCTTTCTTTGAAAGATGTATATAAGAAGGTAGCTGAAGGAAAGAGCGGATGTCTTTGGGAGCAGTTTGAGGTTTATAGGCACCTCAAATCTCTTGGTTTCATTGTTGGAAAGCATAAAGTTCCTTGGTCTGTGAAGAGTGTTAGGAATAGCAGTGAAATTTCTTCTCGAAGTTCTATTGAAAACAAAGGAGCGTCAGATCTTGAATCAGAAGATGAGAGGTCGATCTCCGAACTATGGATGCCATTCAGCTTGGTGAAGGGATATCCACCTCCAAAAAAAGATATTGAAGTCCTTGAGAGAACATCCAGAGGCATTCCAATGAAATATTGTCATGTTGAACATGGACGTGTCTGTTTCTTTTCATTTGATAAGGTGGAGCTCCCCGTTTTACCCTGA

Protein sequence

MFCSSSSQPAVHDIPSPFTLVFPLSFSRLSLSRSPSVTNSPASPSALWRRRRSSDRSEAPAAAVVTVRSHVACCRRPYSRRLNLRPSTSSRRSRVRFGCLLVRGWSIWIFAHSSTVQQAFESFQLDFVGWMRRIKRFDYFTHKPGREKYFKFVTLFDPGILFIFCFEVSLMEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEVLENKGSLWTTTGIVLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSGCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSISELWMPFSLVKGYPPPKKDIEVLERTSRGIPMKYCHVEHGRVCFFSFDKVELPVLP

Homology

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BLAST of Spg005062 vs. NCBI nr
Match: XP_022156818.1 (uncharacterized protein LOC111023660 [Momordica charantia])

HSP 1 Score: 380.6 bits (976), Expect = 1.7e-101
Identity = 196/265 (73.96%), Postives = 211/265 (79.62%), Query Frame = 0


Query: 171 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 230
           MEA DWESSSGGASGDD+IYEQD++DEEECLCASG MRKLQFRKHASTARWNDQMGMAEV
Sbjct: 1   MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 231 LENKGSLWTTTGIV--------------LIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 290
           LEN+GSLWTTTGIV              L+EVGALHLLDHDNSSLSLKDVYKKVAEGK+G
Sbjct: 61  LENRGSLWTTTGIVRCGKIYCSFEETLFLMEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120

Query: 291 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 350
           CLWEQFEVYRHLKSLGFIVGKHKVPWSVK VRN S+IS +SSIEN+GA DLES+DERSIS
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKGVRNGSDISPQSSIENEGAWDLESKDERSIS 180

Query: 351 EL---------------WMPFS---------------LVKGYPPPKKDIEVLERTSRGIP 392
           EL               ++P S               L +GYPPPKKDIE LERTSRGI 
Sbjct: 181 ELLSSIQLDQVMPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEFLERTSRGIH 240

[Close]

BLAST of Spg005062 vs. NCBI nr
Match: XP_038883355.1 (uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883356.1 uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883357.1 uncharacterized protein LOC120074337 [Benincasa hispida])

HSP 1 Score: 374.4 bits (960), Expect = 1.2e-99
Identity = 191/265 (72.08%), Postives = 210/265 (79.25%), Query Frame = 0


Query: 171 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 230
           MEA DWESSSGGASGD+D YE+D+ +EEECLCASGY+RKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEAVDWESSSGGASGDEDNYEEDINNEEECLCASGYLRKLQFRKHASTARWNDRMGMAEV 60

Query: 231 LENKGSLWTTTGIV--------------LIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 290
           LENKGSLWTTTGIV              LIEVGALHLLDHDNSSLSL+DVYKK+AEGK+G
Sbjct: 61  LENKGSLWTTTGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLEDVYKKIAEGKNG 120

Query: 291 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 350
           CLWEQFEVYRHLKSLGFIVGKHKVPWS+KSVR+ S ISS SSIENKGASD++SEDERSIS
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSLKSVRDGSNISSPSSIENKGASDVKSEDERSIS 180

Query: 351 EL---------------WMPFS---------------LVKGYPPPKKDIEVLERTSRGIP 392
           EL               ++P +               L +GYPP KKD+EVL RTSRGIP
Sbjct: 181 ELLDGIQLEEVMPIFDVFLPHNKFRKSSPGDPNFMVYLTRGYPPSKKDLEVLARTSRGIP 240

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BLAST of Spg005062 vs. NCBI nr
Match: KAG6596967.1 (Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 364.4 bits (934), Expect = 1.2e-96
Identity = 187/266 (70.30%), Postives = 204/266 (76.69%), Query Frame = 0


Query: 170 LMEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAE 229
           LMEA DWE SSGGAS DDD +EQD+K+EEECLC+SG MRKLQFRKHASTARWND+MGMAE
Sbjct: 271 LMEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAE 330

Query: 230 VLENKGSLWTTTGIV--------------LIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 289
           VLENKGSLWTT+GIV              LIEVGALHLLDHDNSSLSLKDVYKKVAEGKS
Sbjct: 331 VLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 390

Query: 290 GCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSI 349
            C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  RN  +ISS+SSIENKG++D  SEDE+SI
Sbjct: 391 ECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSQSSIENKGSTDFGSEDEKSI 450

Query: 350 SEL---------------WMPFS---------------LVKGYPPPKKDIEVLERTSRGI 392
            EL               ++P S               L +GYPPPK DIEV+ER S GI
Sbjct: 451 CELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGI 510

[Close]

BLAST of Spg005062 vs. NCBI nr
Match: XP_023538818.1 (tRNA-splicing endonuclease subunit Sen54-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 364.4 bits (934), Expect = 1.2e-96
Identity = 187/265 (70.57%), Postives = 203/265 (76.60%), Query Frame = 0


Query: 171 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 230
           MEA DWE SSGGAS DDD +EQD+K+EEECLC+SG MRKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 231 LENKGSLWTTTGIV--------------LIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 290
           LENKGSLWTT+GIV              LIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 291 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 350
           C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  RN  +ISSRSSIENKG++D  SEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFGSEDEKSIC 180

Query: 351 EL---------------WMPFS---------------LVKGYPPPKKDIEVLERTSRGIP 392
           EL               ++P S               L +GYPPPK DIEV+ER S GIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

[Close]

BLAST of Spg005062 vs. NCBI nr
Match: KAG7028441.1 (tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 362.8 bits (930), Expect = 3.6e-96
Identity = 186/265 (70.19%), Postives = 203/265 (76.60%), Query Frame = 0


Query: 171 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 230
           MEA DWE SSGGAS DDD +EQD+K+EEECLC+SG MRKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 231 LENKGSLWTTTGIV--------------LIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 290
           LENKGSLWTT+GIV              LIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 291 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 350
           C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  RN  +ISS+SSIENKG++D  SEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSQSSIENKGSTDFGSEDEKSIC 180

Query: 351 EL---------------WMPFS---------------LVKGYPPPKKDIEVLERTSRGIP 392
           EL               ++P S               L +GYPPPK DIEV+ER S GIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

[Close]

BLAST of Spg005062 vs. ExPASy TrEMBL
Match: A0A6J1DRN3 (uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023660 PE=3 SV=1)

HSP 1 Score: 380.6 bits (976), Expect = 8.1e-102
Identity = 196/265 (73.96%), Postives = 211/265 (79.62%), Query Frame = 0


Query: 171 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 230
           MEA DWESSSGGASGDD+IYEQD++DEEECLCASG MRKLQFRKHASTARWNDQMGMAEV
Sbjct: 1   MEATDWESSSGGASGDDEIYEQDVEDEEECLCASGNMRKLQFRKHASTARWNDQMGMAEV 60

Query: 231 LENKGSLWTTTGIV--------------LIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 290
           LEN+GSLWTTTGIV              L+EVGALHLLDHDNSSLSLKDVYKKVAEGK+G
Sbjct: 61  LENRGSLWTTTGIVRCGKIYCSFEETLFLMEVGALHLLDHDNSSLSLKDVYKKVAEGKNG 120

Query: 291 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 350
           CLWEQFEVYRHLKSLGFIVGKHKVPWSVK VRN S+IS +SSIEN+GA DLES+DERSIS
Sbjct: 121 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKGVRNGSDISPQSSIENEGAWDLESKDERSIS 180

Query: 351 EL---------------WMPFS---------------LVKGYPPPKKDIEVLERTSRGIP 392
           EL               ++P S               L +GYPPPKKDIE LERTSRGI 
Sbjct: 181 ELLSSIQLDQVMPIFDVFLPHSKFRKSSPGDPNFMVCLTRGYPPPKKDIEFLERTSRGIH 240

[Close]

BLAST of Spg005062 vs. ExPASy TrEMBL
Match: A0A6J1ICR8 (tRNA-splicing endonuclease subunit Sen54 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 2.3e-96
Identity = 187/266 (70.30%), Postives = 204/266 (76.69%), Query Frame = 0


Query: 170 LMEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAE 229
           LMEA DWE SSGGAS DDD +EQD+K+EEECL +SG MRKLQFRKHASTARWND+MGMAE
Sbjct: 4   LMEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAE 63

Query: 230 VLENKGSLWTTTGIV--------------LIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 289
           VLENKGSLWTT+GIV              LIEVGALHLLDHDNSSLSLKDVYKKVAEGKS
Sbjct: 64  VLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 123

Query: 290 GCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSI 349
            C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  RN  +ISSRSSIENKG++D ESEDE+SI
Sbjct: 124 ECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFESEDEKSI 183

Query: 350 SEL---------------WMPFS---------------LVKGYPPPKKDIEVLERTSRGI 392
            EL               ++P S               L +GYPPPK DIEV+ER S GI
Sbjct: 184 CELLNAVQLNELTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGI 243

[Close]

BLAST of Spg005062 vs. ExPASy TrEMBL
Match: A0A6J1I794 (tRNA-splicing endonuclease subunit Sen54 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 362.5 bits (929), Expect = 2.3e-96
Identity = 187/266 (70.30%), Postives = 204/266 (76.69%), Query Frame = 0


Query: 170 LMEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAE 229
           LMEA DWE SSGGAS DDD +EQD+K+EEECL +SG MRKLQFRKHASTARWND+MGMAE
Sbjct: 14  LMEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAE 73

Query: 230 VLENKGSLWTTTGIV--------------LIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 289
           VLENKGSLWTT+GIV              LIEVGALHLLDHDNSSLSLKDVYKKVAEGKS
Sbjct: 74  VLENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 133

Query: 290 GCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSI 349
            C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  RN  +ISSRSSIENKG++D ESEDE+SI
Sbjct: 134 ECIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFESEDEKSI 193

Query: 350 SEL---------------WMPFS---------------LVKGYPPPKKDIEVLERTSRGI 392
            EL               ++P S               L +GYPPPK DIEV+ER S GI
Sbjct: 194 CELLNAVQLNELTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGI 253

[Close]

BLAST of Spg005062 vs. ExPASy TrEMBL
Match: A0A6J1FKK4 (tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111446255 PE=3 SV=1)

HSP 1 Score: 361.7 bits (927), Expect = 3.9e-96
Identity = 185/265 (69.81%), Postives = 203/265 (76.60%), Query Frame = 0


Query: 171 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 230
           MEA DWE SSGGAS DDD +EQD+K+EEECLC+SG MRKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLCSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 231 LENKGSLWTTTGIV--------------LIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 290
           LENKGSLWTT+GIV              LIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 291 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 350
           C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  +N  +ISS+SSIENKG++D  SEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGAKNGGDISSQSSIENKGSTDFGSEDEKSIC 180

Query: 351 EL---------------WMPFS---------------LVKGYPPPKKDIEVLERTSRGIP 392
           EL               ++P S               L +GYPPPK DIEV+ER S GIP
Sbjct: 181 ELIDAIQLNEVTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

[Close]

BLAST of Spg005062 vs. ExPASy TrEMBL
Match: A0A6J1I8D9 (tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 GN=LOC111471897 PE=3 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 6.6e-96
Identity = 186/265 (70.19%), Postives = 203/265 (76.60%), Query Frame = 0


Query: 171 MEARDWESSSGGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQMGMAEV 230
           MEA DWE SSGGAS DDD +EQD+K+EEECL +SG MRKLQFRKHASTARWND+MGMAEV
Sbjct: 1   MEATDWEISSGGASDDDDNFEQDIKEEEECLRSSGNMRKLQFRKHASTARWNDEMGMAEV 60

Query: 231 LENKGSLWTTTGIV--------------LIEVGALHLLDHDNSSLSLKDVYKKVAEGKSG 290
           LENKGSLWTT+GIV              LIEVGALHLLDHDNSSLSLKDVYKKVAEGKS 
Sbjct: 61  LENKGSLWTTSGIVRCGKIYCSIEETLFLIEVGALHLLDHDNSSLSLKDVYKKVAEGKSE 120

Query: 291 CLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSIENKGASDLESEDERSIS 350
           C+WEQFEVYRHLKSLG+IVGKHKVPWSVK  RN  +ISSRSSIENKG++D ESEDE+SI 
Sbjct: 121 CIWEQFEVYRHLKSLGYIVGKHKVPWSVKGARNGGDISSRSSIENKGSTDFESEDEKSIC 180

Query: 351 EL---------------WMPFS---------------LVKGYPPPKKDIEVLERTSRGIP 392
           EL               ++P S               L +GYPPPK DIEV+ER S GIP
Sbjct: 181 ELLNAVQLNELTPIFDVYLPHSKFRKSSPGDPNFMVCLTRGYPPPKTDIEVIERKSGGIP 240

[Close]

BLAST of Spg005062 vs. TAIR 10
Match: AT3G57360.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02370.2); Has 122 Blast hits to 122 proteins in 54 species: Archae - 0; Bacteria - 0; Metazoa - 74; Fungi - 4; Plants - 41; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 159.1 bits (401), Expect = 7.4e-39
Identity = 96/264 (36.36%), Postives = 141/264 (53.41%), Query Frame = 0


Query: 171 MEARDWESSS-----GGASGDDDIYEQDMKDEEECLCASGYMRKLQFRKHASTARWNDQM 230
           ME +DWE+SS     GG   DDD          E   + G + KLQFR  +S ARW  ++
Sbjct: 1   MEEKDWEASSSSENEGGFPNDDD----------EEFHSGGSVPKLQFRVGSSKARWITEL 60

Query: 231 GMAEVLENKGSLWTTTGIV--------------LIEVGALHLL-DHDNSSLSLKDVYKKV 290
           GMAEV   +G LWTTTGI+              L E+G L +L + D+  + LKD+Y+K+
Sbjct: 61  GMAEVEVKRGKLWTTTGIIRSGKTYCFIEEALYLSEIGELQILGNEDDIVIPLKDLYEKI 120

Query: 291 AEGKSGCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRN---------SSEISSRSSIEN 350
           AE KSGC WE +EVYR+LK LG+I+G+H V W++K             + E  + +    
Sbjct: 121 AEEKSGCSWENYEVYRYLKGLGYILGRHGVSWTLKDAARPNGEEESACAGECPADNDTVT 180

Query: 351 KGASDLESEDERSISELWMPFSLVK---------------GYPPPKKDIEVLERTSRGIP 391
           K   D++  D +++ ++++P S  K                 PP K+DI+VL++     P
Sbjct: 181 KLLGDMQICDAKAVFDVYLPNSRFKKSSPGEPSFVACFSGDSPPSKEDIKVLQKRI-AAP 240

[Close]

BLAST of Spg005062 vs. TAIR 10
Match: AT3G02370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1); Has 95 Blast hits to 95 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 53; Fungi - 2; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-21
Identity = 59/150 (39.33%), Postives = 82/150 (54.67%), Query Frame = 0


Query: 227 MAEVLENKGSLWTTTGIV--------------LIEVGALHLL-DHDNSSLSLKDVYKKVA 286
           MAEV   +G LWTTTGI+              L E+G L LL D D+  +SLKD+Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 287 EGKSGCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSI-----------E 346
           EGK GC WE +EVYR+LK LG+I+G+H VPW+ K   N++      S+            
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVNTTPSDEDESLCAAEFFQDRDSV 120

Query: 347 NKGASDLESEDERSISELWMPFSLVKGYPP 351
            K  SD+   D R + ++++P S  K   P
Sbjct: 121 TKLLSDMHICDARPVFDVYLPNSQFKKSSP 150

[Close]

BLAST of Spg005062 vs. TAIR 10
Match: AT3G02370.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57360.1). )

HSP 1 Score: 100.5 bits (249), Expect = 3.1e-21
Identity = 59/150 (39.33%), Postives = 82/150 (54.67%), Query Frame = 0


Query: 227 MAEVLENKGSLWTTTGIV--------------LIEVGALHLL-DHDNSSLSLKDVYKKVA 286
           MAEV   +G LWTTTGI+              L E+G L LL D D+  +SLKD+Y ++A
Sbjct: 1   MAEVEVKRGKLWTTTGIIRTGKTYCFIEEALYLSEIGELQLLGDEDDVVISLKDLYGEIA 60

Query: 287 EGKSGCLWEQFEVYRHLKSLGFIVGKHKVPWSVKSVRNSSEISSRSSI-----------E 346
           EGK GC WE +EVYR+LK LG+I+G+H VPW+ K   N++      S+            
Sbjct: 61  EGKYGCCWENYEVYRYLKGLGYILGRHGVPWTTKYAVNTTPSDEDESLCAAEFFQDRDSV 120

Query: 347 NKGASDLESEDERSISELWMPFSLVKGYPP 351
            K  SD+   D R + ++++P S  K   P
Sbjct: 121 TKLLSDMHICDARPVFDVYLPNSQFKKSSP 150

The following BLAST results are available for this feature:

BLAST of Spg005062 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156818.1	1.7e-101	73.96	uncharacterized protein LOC111023660 [Momordica charantia]	[more]
XP_038883355.1	1.2e-99	72.08	uncharacterized protein LOC120074337 [Benincasa hispida] >XP_038883356.1 unchara...	[more]
KAG6596967.1	1.2e-96	70.30	Chromatin assembly factor 1 subunit FAS1, partial [Cucurbita argyrosperma subsp....	[more]
XP_023538818.1	1.2e-96	70.57	tRNA-splicing endonuclease subunit Sen54-like [Cucurbita pepo subsp. pepo]	[more]
KAG7028441.1	3.6e-96	70.19	tRNA-splicing endonuclease subunit Sen54 [Cucurbita argyrosperma subsp. argyrosp...	[more]

BLAST of Spg005062 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005062 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRN3	8.1e-102	73.96	uncharacterized protein LOC111023660 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1ICR8	2.3e-96	70.30	tRNA-splicing endonuclease subunit Sen54 isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1I794	2.3e-96	70.30	tRNA-splicing endonuclease subunit Sen54 isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1FKK4	3.9e-96	69.81	tRNA-splicing endonuclease subunit Sen54 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I8D9	6.6e-96	70.19	tRNA-splicing endonuclease subunit Sen54 isoform X3 OS=Cucurbita maxima OX=3661 ...	[more]

BLAST of Spg005062 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57360.1	7.4e-39	36.36	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G02370.1	3.1e-21	39.33	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G02370.2	3.1e-21	39.33	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (cylindrica) v1
Date Performed: 2022-08-01

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..53
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..47
IPR024337	tRNA-splicing endonuclease, subunit Sen54	PANTHER	PTHR21027	TRNA-SPLICING ENDONUCLEASE SUBUNIT SEN54	coord: 171..335 coord: 344..391

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005062.1	Spg005062.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000379	tRNA-type intron splice site recognition and cleavage
cellular_component	GO:0000214	tRNA-intron endonuclease complex