Spg005053 (gene) Sponge gourd (cylindrica) v1

Overview


Name	Spg005053
Type	gene
Organism	Luffa cylindrica (Sponge gourd (cylindrica) v1)
Description	Ribonuclease H
Location	scaffold11: 12145514 .. 12148752 (+)
RNA-Seq Expression	Spg005053
Synteny	Spg005053

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCCATTGAAGATGAGAACGAAAGTTGGACCATTGTCGTTCGTCGCAAAAGGCGAAAACAAAGTTACGCACAGAAGGAGTCCCGCCTATTTTGAGATGGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAGGGAAAAAAAGAAGACAAGGAGGCCAAAGGTTGTTGTGGAGGAAAGTGAAGATTTCTTTTGTCCTCCACAACCTATCACTTTGGAAGAATACTTCCCAAGGTGCTTTCTCAATGACAGTCAAGGAGAGACACTAGAAACTATCACGTGTCATATTGTGGACGTGGTGGAAGGTGATGATGTTCCTTCTAGCTCATTGGGAATGGTGATAGGTCCAGGAGACTTATCCTCCTTCAATATAAAAGTGTTCTTATTGATGCGTTGGTGGAGTCTGATGGTTCAAACATCTTGACCTCTAAGGCACGCACATGCGCTTCATGTTGCATGTCCATAGGCTTTACTGATGAAGATTTGTTGTTGGGGTCAAAGCCGCACAATAGACCTTTATTCGTTTCGGGATACATCCGAGAACAAAAGGTTTGTCGAATCCTCATTGATGATGGATCAGCTGTCAACATAATGCCTAAGTCAACCATGAAACAACTAGGCATCTTGATGGAAGAACTATCAAACAACAAATTGGTGATCCAAGGTTTCAATCAAGGTGGACAACGAGCGATTGGCATGATACGCCTCGAGCTCATCATTGGAGACCTAAAAGCCGATACTTTGTTTCATGTTATAGATTCCAAGACCACCTATAAGCTACTATTAGGTCGTCTTTGGATCCATGGCAATGGAGTGATAACCTCTACATTGCACCAGTGTTTCAAGTTCTACCAAGATGACATCAAGAAAGTTGAAGCTGAGACTAACCCATTTTCAGAAGCTGAGTCCCATTTCGCTGACGCAAAGTTTTATATGAAGAGCGACAACACTGGGGGAAGTTATCAAAAAGAACGATTAACTCAGTTTAGAGCCACAAGCTGATGCAAGAAAGGAAACTGTTGAAAATGTGAAGGCATTCGACTTGGAAAAGGGTGAAACATCTACGAACATTGTGAAACCTAAGATTGTAAAGGGTGAATCACCTTTCAGAGAATGTTTGGGAAACTTGAGGGTCGGTGACATTGAAATTCTGAAGGAAAGTTTCACTACGCCTCTTACAAAGATCACAAAGCCAGAGGTTAAAAAACCTGAGAATGACCAGATAAAAATGATTTTGCCTGACAAACGAATGAAAGATGGGTTTGACCCCAAGGCATGCAAACTTCTAGCAAAAGCGAGTTATGACTTCACAACTCACACTGAGTTCAAAAGTCTAAGGATCTTTGATGAAAGACCTGAGCTTTCTTCAACGCAGAAAAATATTCTAAAGGAAGGTTATACTCTACCTACATCGAGAAAAGGACTTGGATATAAGTCACCTGAGTCGATTCGCATTACAAGAAGAGGAAAAGCGAAAGTGGCAGACACAAACCATATAACGATAGAGGAGGTTCATGACTCAAAAGAAAAAGGGAGCATTGACCAACGAACTTTTATTTTTAGGCGCATTAGGCCACCAGTTGCTCGTGCTTTAGTCTTTCAAAGATTAGGTGTGAATGAAACGGAAGAAGAAAGTACACAACCTACTAATAGCTCCACTCGGCCTTCAGTTTTTCGAAGGTTAAATATGCCCGTTGGAGAAGAAGAAAGTACATTGTCCACTATGGCTGTGACTTGACCATCAGTTTTTCAGAGGTTAAGTTTAACCATGAGAAGAGACAAAAAAGAACAGTCTACTTCGTCGATTTCTCACCGACTTCGATATGAAGATGCGATGAAAACTAAAAAGATCACGAAGGCTAATGGAGAAATTCGTAGTGCAGTTCTTTCACGAATGAAGAGAAAAACCTTTGTTACTGTCAATGTGGATGGTTCCTTGAAGGTAAAGCGATGTGATGTTGTCATCACCAATCCTTCAGAAGAAGATAATGACCAGGAGGAAGAACAGACATCTTGTCTTCATATCACTGTTGAAAAAGAAACAGAGGTTGAAATGTCTGAAGTAGATGAGGACGAAACACCTCCATCACTTGAAGACGACAGCGAATCTACAGTGGATGAGCTTAAAAAAGTAAACCTGGGTACACCAGAAGAGCCGTGTCCAACTTTTATAAGCGCGTCAGTTACTCCTGAAGAAGAGGGTGAATACATGAGTTTACTCGTTGATGCGCAATTTGCTAACCGCAAGTGTACGGGTCAAGTAATAATATAATGTTTTCGTGATTAAACGAGTGTCGTCCTCTGGATTGGTTTTCTAGCAAATTAAGTACCGTGAATACTTTTGTCCAATTTTATTTAGGGAGCAAAACTTCATGAAAAAGATAAATCTAAAGACAAAAAAACATAAAATAAAGATGGAGACTCAAATGGAAAGACTCTTAGGGAATTGATTTCGTTGATTAAGATTGAGGATTGATTAATAGGAATGAATTGACCGTGCAATTATTCTACAAGCCAAGGAAACATTTATCACGATTACCTCTCCCGAGTATAATTGATTCTCATGGATATAACTAACTTAATATCCCTATCTAAGTTCATTAACATGCAAGGCATTATTCGGTTCGGACCTTGTTATACTTCTAGAGATATTCTAAATCCCGTCACAAACTTTGAATTTCTACTCTAGTCATGCAATTGAACAAAGCAAGTCTTAGGCCAAATCCTCTCTCCCGAGTTAGATTCAACACTTAAATCATTCAATTAGTGATCAAGTAATTGAAAGCATTACACATAAAATTGCATGCATAGAATAAGAACACATTCATACCCAAAATTCAATCCAACAATTTAAGCAACTACATCAAACCCTAAGACAAACAACTAGCAATTCATAGTCTTTAAACCACAAACACTAATTGAAAGAAAAGCCATAAAAACTACAAGAGTTAAGGGAAAGAGTAAGGAAAACTCGAATTCGCCGACACCGCACGTCCCCGTCACGATCTCCACGTCTTCTCGCTTGATTCCCGCTCCTCGGCCTTGCCTTCAGCTCCCACAGAAGATCTCTAGTCGAAATTAGGGCTAAAATCTCACCAATTGGACTCCCCCAATCCGTAGCACAAAATGATGAATTTATAGAAAATCTGCCGACAGCGTCGAGACGCTATAGACAGCGTCGCGACGCTGTCGCGATACTGCGGATTTGGAAAATTCGCCGAGAGCGTCGCGACGCTATGA

mRNA sequence

ATGATTCCATTGAAGATGAGAACGAAAGTTGGACCATTGTCGTTCGTCGCAAAAGGCGAAAACAAAGTTACGCACAGAAGGAGTCCCGCCTATTTTGAGATGGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAGGGAAAAAAAGAAGACAAGGAGGCCAAAGGTTGTTGTGGAGGAAAGTGAAGATTTCTTTTGTCCTCCACAACCTATCACTTTGGAAGAATACTTCCCAAGGTGCTTTCTCAATGACAGTCAAGGAGAGACACTAGAAACTATCACGTGTCATATTGTGGACGTGGTGGAAGGTGATGATGTTCCTTCTAGCTCATTGGGAATGAAAAATATTCTAAAGGAAGGTTATACTCTACCTACATCGAGAAAAGGACTTGGATATAAGTCACCTGAGTCGATTCGCATTACAAGAAGAGGAAAAGCGAAAGTGGCAGACACAAACCATATAACGATAGAGGAGGTTCATGACTCAAAAGAAAAAGGGAGCATTGACCAACGAACTTTTATTTTTAGGCGCATTAGGCCACCAGTTGCTCGTGCTTTAGTCTTTCAAAGATTAGTTTTTCAGAGGTTAAGTTTAACCATGAGAAGAGACAAAAAAGAACAGTCTACTTCGTCGATTTCTCACCGACTTCGATATGAAGATGCGATGAAAACTAAAAAGATCACGAAGGCTAATGGAGAAATTCGTAGTGCAGTTCTTTCACGAATGAAGAGAAAAACCTTTGTTACTGTCAATGTGGATGGTTCCTTGAAGCGTCGAGACGCTATAGACAGCGTCGCGACGCTGTCGCGATACTGCGGATTTGGAAAATTCGCCGAGAGCGTCGCGACGCTATGA

Coding sequence (CDS)

ATGATTCCATTGAAGATGAGAACGAAAGTTGGACCATTGTCGTTCGTCGCAAAAGGCGAAAACAAAGTTACGCACAGAAGGAGTCCCGCCTATTTTGAGATGGTAAAAGAAAAGTTAAGTCTCAAAGGAAGAAGGGAAAAAAAGAAGACAAGGAGGCCAAAGGTTGTTGTGGAGGAAAGTGAAGATTTCTTTTGTCCTCCACAACCTATCACTTTGGAAGAATACTTCCCAAGGTGCTTTCTCAATGACAGTCAAGGAGAGACACTAGAAACTATCACGTGTCATATTGTGGACGTGGTGGAAGGTGATGATGTTCCTTCTAGCTCATTGGGAATGAAAAATATTCTAAAGGAAGGTTATACTCTACCTACATCGAGAAAAGGACTTGGATATAAGTCACCTGAGTCGATTCGCATTACAAGAAGAGGAAAAGCGAAAGTGGCAGACACAAACCATATAACGATAGAGGAGGTTCATGACTCAAAAGAAAAAGGGAGCATTGACCAACGAACTTTTATTTTTAGGCGCATTAGGCCACCAGTTGCTCGTGCTTTAGTCTTTCAAAGATTAGTTTTTCAGAGGTTAAGTTTAACCATGAGAAGAGACAAAAAAGAACAGTCTACTTCGTCGATTTCTCACCGACTTCGATATGAAGATGCGATGAAAACTAAAAAGATCACGAAGGCTAATGGAGAAATTCGTAGTGCAGTTCTTTCACGAATGAAGAGAAAAACCTTTGTTACTGTCAATGTGGATGGTTCCTTGAAGCGTCGAGACGCTATAGACAGCGTCGCGACGCTGTCGCGATACTGCGGATTTGGAAAATTCGCCGAGAGCGTCGCGACGCTATGA

Protein sequence

MIPLKMRTKVGPLSFVAKGENKVTHRRSPAYFEMVKEKLSLKGRREKKKTRRPKVVVEESEDFFCPPQPITLEEYFPRCFLNDSQGETLETITCHIVDVVEGDDVPSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARALVFQRLVFQRLSLTMRRDKKEQSTSSISHRLRYEDAMKTKKITKANGEIRSAVLSRMKRKTFVTVNVDGSLKRRDAIDSVATLSRYCGFGKFAESVATL

Homology

[Close]

BLAST of Spg005053 vs. NCBI nr
Match: XP_031742390.1 (uncharacterized protein LOC116401672 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 3.8e-23
Identity = 86/195 (44.10%), Postives = 110/195 (56.41%), Query Frame = 0


Query: 100 VEGDDVPSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVH 159
           +E  D P  S   K +L+EG+++P SRKGLGYKSPE IRIT++GK KV D NHITIEE  
Sbjct: 714 LEIHDRPELSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEEDD 773

Query: 160 DSKEKGSIDQRTFIFRRIRPPVARALVFQRL---------------VFQRL--------- 219
           ++  K   +QR  +F RIRP VAR +VF+RL               +F  L         
Sbjct: 774 NTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLHTRAPIFNHLGDKGSHDNI 833

Query: 220 -SLTMRRDKKEQSTSSISHRLRYEDA--MKTKKI---TKANGEIRSAVLSRMKRKTFVTV 262
            S    + K+  S   +  R+++ D    ++KK    TK NGEI S V SRMKRKTFVT+
Sbjct: 834 DSNIDTKKKEPMSRVKVWRRIKHTDVDNYRSKKFPCETKENGEIHSNVPSRMKRKTFVTL 893

[Close]

BLAST of Spg005053 vs. NCBI nr
Match: XP_031739261.1 (uncharacterized protein LOC116402916 [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 9.5e-22
Identity = 81/198 (40.91%), Postives = 107/198 (54.04%), Query Frame = 0


Query: 100 VEGDDVPSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVH 159
           +E  D P  S   K +L+EG+++P SRKGLGYKSPE IRIT++GK KV D NHITIEE  
Sbjct: 17  LEIHDRPELSSTQKKLLREGHSIPVSRKGLGYKSPEPIRITKKGKEKVVDINHITIEEDD 76

Query: 160 DSKEKGSIDQRTFIFRRIRPPVARALVFQRL--------------------VFQRLSLTM 219
           ++  K   +QR  +F RIRP VAR +VF+RL                    VF+RL+ T 
Sbjct: 77  NTDVKEGDNQRISVFDRIRPSVARPVVFERLSMTEAERERLQSVPNLERHSVFRRLTTTP 136

Query: 220 RRD----------------------KKEQSTSSISHRLRYEDA--MKTKKI---TKANGE 251
            ++                      K+  S   +  R+++ D    ++KK    TK NGE
Sbjct: 137 IKEESTCHALTTTRPSAFERLDTKKKEPMSRVKVWRRIKHTDVDNYRSKKFPCETKENGE 196

[Close]

BLAST of Spg005053 vs. NCBI nr
Match: TYK05005.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 2.8e-21
Identity = 96/253 (37.94%), Postives = 127/253 (50.20%), Query Frame = 0


Query: 67   PQPITLEEYFPRCF-LNDSQGETLETITCHIVDVVEGDDVPSSSLGMKNILKEGYTLPTS 126
            PQ  T +E+ P+ + L    G    T T      ++  + P  S   K +L+EG+ +P S
Sbjct: 758  PQRRTKDEFDPKAYKLMAKAGYDFTTHT--EFKSLKIHEQPKLSSTQKKLLREGHAIPMS 817

Query: 127  RKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARAL 186
            RKGLGYK PE IRITR+GK K+ D+NHIT++EV   KEK    QRT  F RI P VARA 
Sbjct: 818  RKGLGYKLPEPIRITRKGKEKMVDSNHITVKEVDSMKEKEGDSQRTSAFDRISPHVARAP 877

Query: 187  VFQRL--------------------VFQRLSLTMRRD----------------------- 246
            VF+RL                     F+RLS+T ++                        
Sbjct: 878  VFERLSVTEAERKDHQSTSNLDRRSAFERLSITKKKHAQTPRAPIINRLGDGGLHVQTDS 937

Query: 247  ----KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVNV 262
                KK++STS +S  HR+++   ++   K+     K   EI S V SRMKRKTFVT+N 
Sbjct: 938  SIDIKKKESTSRVSVWHRIKHINVESRHGKEFPCEVKGEREICSNVPSRMKRKTFVTLNA 997

[Close]

BLAST of Spg005053 vs. NCBI nr
Match: KAA0033244.1 (uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa] >TYK19597.1 uncharacterized protein E5676_scaffold9G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 4.7e-21
Identity = 82/199 (41.21%), Postives = 105/199 (52.76%), Query Frame = 0


Query: 106 PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKG 165
           P  S   K +L+EG+ +P SRKGLGYKSPE IRITR+GK KV D NHIT++EV   +EK 
Sbjct: 23  PKLSSTQKKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMEEKE 82

Query: 166 SIDQRTFIFRRIRPPVARALVFQRL--------------------VFQRLSLTMRRD--- 225
              QRT  F RI P VARA VF+RL                     F+RLS+T +++   
Sbjct: 83  GDSQRTSAFDRISPHVARAPVFERLSVTEAERKDHQSTSNLDRRSAFERLSITKKKNAQT 142

Query: 226 ------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANG 251
                                   KK++STS +S   R+R+   ++   K+     K   
Sbjct: 143 PRAPIINRLGDEGLHVQTDSSIDTKKKESTSRVSVWRRIRHINVESRHGKEFPCEEKGER 202

[Close]

BLAST of Spg005053 vs. NCBI nr
Match: KAA0062018.1 (uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 2.0e-19
Identity = 82/206 (39.81%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 106 PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKG 165
           P  S   K +L+EG+ +P SRKGLGYK PE IRITR+GK K+ D+NHI ++EV   +EK 
Sbjct: 354 PKISSTQKKLLREGHAIPMSRKGLGYKLPEPIRITRKGKEKMVDSNHIIVKEVDSMEEKE 413

Query: 166 SIDQRTFIFRRIRPPVARALVFQRL--------------------VFQRLSLTMRRD--- 225
              QRT  F RI P VARA VF+RL                     F+RLS+T +++   
Sbjct: 414 GDSQRTSAFDRISPHVARAPVFERLSVIEAERKDHQSTSNLDRQSAFERLSITKKKNAQT 473

Query: 226 ------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANG 257
                                   KK++STS +S  HR+++   ++   K+     K   
Sbjct: 474 PRAPIINRLGDGGLHVQTDSSIDTKKKESTSRVSVWHRIKHINVESRHGKEFPCEVKGER 533

[Close]

BLAST of Spg005053 vs. ExPASy TrEMBL
Match: A0A5D3C0W6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold143G002360 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-21
Identity = 96/253 (37.94%), Postives = 127/253 (50.20%), Query Frame = 0


Query: 67   PQPITLEEYFPRCF-LNDSQGETLETITCHIVDVVEGDDVPSSSLGMKNILKEGYTLPTS 126
            PQ  T +E+ P+ + L    G    T T      ++  + P  S   K +L+EG+ +P S
Sbjct: 758  PQRRTKDEFDPKAYKLMAKAGYDFTTHT--EFKSLKIHEQPKLSSTQKKLLREGHAIPMS 817

Query: 127  RKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKGSIDQRTFIFRRIRPPVARAL 186
            RKGLGYK PE IRITR+GK K+ D+NHIT++EV   KEK    QRT  F RI P VARA 
Sbjct: 818  RKGLGYKLPEPIRITRKGKEKMVDSNHITVKEVDSMKEKEGDSQRTSAFDRISPHVARAP 877

Query: 187  VFQRL--------------------VFQRLSLTMRRD----------------------- 246
            VF+RL                     F+RLS+T ++                        
Sbjct: 878  VFERLSVTEAERKDHQSTSNLDRRSAFERLSITKKKHAQTPRAPIINRLGDGGLHVQTDS 937

Query: 247  ----KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANGEIRSAVLSRMKRKTFVTVNV 262
                KK++STS +S  HR+++   ++   K+     K   EI S V SRMKRKTFVT+N 
Sbjct: 938  SIDIKKKESTSRVSVWHRIKHINVESRHGKEFPCEVKGEREICSNVPSRMKRKTFVTLNA 997

[Close]

BLAST of Spg005053 vs. ExPASy TrEMBL
Match: A0A5A7SPV8 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00010 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.3e-21
Identity = 82/199 (41.21%), Postives = 105/199 (52.76%), Query Frame = 0


Query: 106 PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKG 165
           P  S   K +L+EG+ +P SRKGLGYKSPE IRITR+GK KV D NHIT++EV   +EK 
Sbjct: 23  PKLSSTQKKLLREGHAIPMSRKGLGYKSPEPIRITRKGKEKVVDNNHITVKEVDSMEEKE 82

Query: 166 SIDQRTFIFRRIRPPVARALVFQRL--------------------VFQRLSLTMRRD--- 225
              QRT  F RI P VARA VF+RL                     F+RLS+T +++   
Sbjct: 83  GDSQRTSAFDRISPHVARAPVFERLSVTEAERKDHQSTSNLDRRSAFERLSITKKKNAQT 142

Query: 226 ------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANG 251
                                   KK++STS +S   R+R+   ++   K+     K   
Sbjct: 143 PRAPIINRLGDEGLHVQTDSSIDTKKKESTSRVSVWRRIRHINVESRHGKEFPCEEKGER 202

[Close]

BLAST of Spg005053 vs. ExPASy TrEMBL
Match: A0A5A7V356 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G003490 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.6e-20
Identity = 82/206 (39.81%), Postives = 107/206 (51.94%), Query Frame = 0


Query: 106 PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKG 165
           P  S   K +L+EG+ +P SRKGLGYK PE IRITR+GK K+ D+NHI ++EV   +EK 
Sbjct: 354 PKISSTQKKLLREGHAIPMSRKGLGYKLPEPIRITRKGKEKMVDSNHIIVKEVDSMEEKE 413

Query: 166 SIDQRTFIFRRIRPPVARALVFQRL--------------------VFQRLSLTMRRD--- 225
              QRT  F RI P VARA VF+RL                     F+RLS+T +++   
Sbjct: 414 GDSQRTSAFDRISPHVARAPVFERLSVIEAERKDHQSTSNLDRQSAFERLSITKKKNAQT 473

Query: 226 ------------------------KKEQSTSSIS--HRLRY--EDAMKTKKI---TKANG 257
                                   KK++STS +S  HR+++   ++   K+     K   
Sbjct: 474 PRAPIINRLGDGGLHVQTDSSIDTKKKESTSRVSVWHRIKHINVESRHGKEFPCEVKGER 533

[Close]

BLAST of Spg005053 vs. ExPASy TrEMBL
Match: A0A5D3DXC7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00760 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 1.2e-19
Identity = 88/238 (36.97%), Postives = 114/238 (47.90%), Query Frame = 0


Query: 106 PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKG 165
           P  S   K +L+EG+ +P SRKGLGYKSPE IRITR+GK KV D+NHIT++EV   +EK 
Sbjct: 261 PKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKEKVVDSNHITVKEVDSMEEKE 320

Query: 166 SIDQRTFIFRRIRPPVARALVFQRL----------------------------------- 225
             +QRT  F RI P VARA VF+RL                                   
Sbjct: 321 GDNQRTSTFDRISPHVARAPVFERLSMTEAERKDHQSTSNLDQRSAFQRLTITFKEEKGI 380

Query: 226 ----------VFQRLSLTMRRD---------------------------KKEQSTSSIS- 262
                      F+RLS+T +++                           KK++STS +  
Sbjct: 381 CQTSMTTKPSAFERLSITKKKNAQTPRAPIINRLGDGGLHVQTDSSIDTKKKESTSRVLV 440

[Close]

BLAST of Spg005053 vs. ExPASy TrEMBL
Match: A0A5A7UMY2 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold319G00830 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.8e-19
Identity = 62/123 (50.41%), Postives = 78/123 (63.41%), Query Frame = 0


Query: 106 PSSSLGMKNILKEGYTLPTSRKGLGYKSPESIRITRRGKAKVADTNHITIEEVHDSKEKG 165
           P  S   K +L+EG+ +P SRKGLGYKSPE IRITR+GK KV D NHIT++EV   +EK 
Sbjct: 287 PKLSSTQKKLLREGHVIPMSRKGLGYKSPEPIRITRKGKKKVVDNNHITVKEVDSMEEKE 346

Query: 166 SIDQRTFIFRRIRPPVARALVFQRLVFQRLSLTMRRDKKEQSTSSISHRLRYEDAMKTKK 225
             +QRT  F RI P VARA      VF+RLS+T  + K  QSTS++  R  ++    T K
Sbjct: 347 GDNQRTSTFDRISPHVARA-----PVFERLSMTEAKRKDHQSTSNLDRRSAFQRLTITFK 404

Query: 226 ITK 229
             K
Sbjct: 407 EEK 404

The following BLAST results are available for this feature:

BLAST of Spg005053 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031742390.1	3.8e-23	44.10	uncharacterized protein LOC116401672 [Cucumis sativus]	[more]
XP_031739261.1	9.5e-22	40.91	uncharacterized protein LOC116402916 [Cucumis sativus]	[more]
TYK05005.1	2.8e-21	37.94	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033244.1	4.7e-21	41.21	uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0062018.1	2.0e-19	39.81	uncharacterized protein E6C27_scaffold89G003490 [Cucumis melo var. makuwa]	[more]

BLAST of Spg005053 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Spg005053 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0W6	1.3e-21	37.94	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SPV8	2.3e-21	41.21	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00010 P...	[more]
A0A5A7V356	9.6e-20	39.81	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DXC7	1.2e-19	36.97	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7UMY2	2.8e-19	50.41	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Spg005053 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spg005053.1	Spg005053.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090304	nucleic acid metabolic process