Spg004922 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004922
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionReverse transcriptase
Locationscaffold9: 20314025 .. 20317279 (+)
RNA-Seq ExpressionSpg004922
SyntenySpg004922
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AGAAGTAAAGAAAAGAAAAGAAAAGGAAAAGGAAAAGGAAAAGGAAAAAGGAAAAAAAAAAAAGAAAATGAAAGGAAGTGGGAAACCCATTCGGTGCAATGGTTTTAAGGAGACTCCCACCACCGCGTAACTTATTCTCAGCCCATTATCAGCCCCATTTCTCATCTTTTTCCACCCAAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAGGAAGAAGAAGAAGAATTTCGTGGTTTTGAGGTTGAACAAGATAAGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGGGTGCAAAATTGTCAACCTCTGGTTTTTAATTCGGTTTGAGCTACACAGAAGGAAATAAGAGGTGAGATTTTATTTTCTTGAAAGTTAGTTCAGTTTCTAACAAAATTCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGATTTTTGAATGGAGAACAGAGCACAGGATTTTCGAGCAAACCAGAAGGATCTCTGGGGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCAGAAGCTCTATTTGGTATTGTTGGAAAGCTTATTCAATTTCCTACAACTTTCATGAAAATTTTGTGAGCCAAAAAAGACTTTACGTAGGGTTCATTTCAGGAGTTAGATAAAGGGTAGCAGAGAACCTCGAATCTGTGTTGTCTGTGTTCGGGACAATTCTGGGCAAATCGGTTGGGAATCTCATTTTCATTTCTTCAGGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTATGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTATGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAGACCAGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTTGAAAATTGTTTCCAACGGTTGTTCATGTTTAGACGTTTTATATGCTTTACCATGAATGATATATGATTTTTATGAACGGTTTCAAGCATAAGTTCTGAGCTCAGATTTTCTAATGAGGTTTATATACGAGCACGTGGCTAATGACTTTATGAAAAGTAGCTAAAACGATATCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTTCAGTTTTTCACGAGCAAGCTGAGTAAGTTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGGCCCCACTACGACAAAGACGATGCGAGTGCTGGGCGAGCCCCACTACATCGTAGGATTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAGATCGGTCATGTTAGTTAAAACGTTTGATGTACTTTATATGCCTTGCTAGATTTTTAATGATGAACTTACGAGATGTTTTGGAAAGCCTTTATTATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGTTTATCACGTGTTTGACTTCCGGATTTAGAGTTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAATGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGTTCCAGAACAAGCTCCAGTATGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAAGGATTGGATAATATAGTCCTAGAGGTCGTGGTTGTATAAACCCTAGTTGTATATGTTTTGGTTGTGACATCTATATCAAGTTATTATCCGAACCAAGTTATGTCAGGGCGGCACCTCGTGTTTGTTGGAAGTTTTTTTTTTCAGGGATTCCGCTGTGTTCTATTTCATGTAGAATGTTTTATATCCATGATTAGTATGTTTATCAGGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCCAGCAGGTGGTCCGGGAGGGGGTGATGGCATCATGCAGTATTGCAGGATGGTTGAAATAGGGTACTCATGTATACTAGTGTACATTGCGTAAGTATAAAACCTATGACATATTTTATTTATTTACTATGATTTTCAATGTTTTATAATATTGTTTATTTTCTTTAGGTATCTTTGGACTGTATGTGACAATGAAATAACGAGCAAATTTCTGATAGTTGATCAAGGAACCATTTCTTCATTTGTAAAGTGTCAAGAAACTTGTTGCAGAAATCTAGCCAACCAGCTAGACATGGTTAATTTGAATCAACTAGTCATCATCCCGTATAATACTGGGTAAGTAATGTCAATTCAAATCAGTTTTACTTAATTATAGGTGTAATTTGTGATAAACTATTAAAAAGAATGTTCATTTTTAATAGGTGTCATTGGATGTTGTTGATTGTGATCAATCCTAGAGAGAATACCGTTTATGTGTTGAACTCATTACGTAGTAAGATTGAAGAAAGTTTTCAAGGAATTATCAATACGTAAGTATCTATAAACTTTTATTGTGGTTGATTCTTCATATCTATATCACTCTAATGTTCAAATTGTTTAGATCATTGAGAATGTGGCAAGCAAAGAACTCACTCCCATAATTTCGCTCGAACATAATTTGGAAACTTATAAAGGTAAATTTACATTGACTATATTCTCAACGTTATCAAATTTGTCAACTCAAGTATAATGTTTTTCAACTTGTTTTACATGTAGTGCCCCCATCAATTGGGTTCTGTAGAGTGTGGATATTATGTGCAAAAGTATATTCGAGAAATAGTACACAACTCATCTACGTCTATAAGTAATCTTGTACGTAATCGTATTCAACTCCACTACTTGTATAAGTATCTTTTAATTATTTATAATTCAATTTTCTAAAGGATTCTTATATTTTGTTTATGGTTTTTCTTATGTTTAGTTTAACATGAAAACAACATATACGCAAGAAGAAATTGACGAGGTTCGGATAGAATGGGCAGGGTTCGTGGGAACATTTGTGTAG

mRNA sequence

ATGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCCAGCAGGTGGTCCGGGAGGGGGTGATGGCATCATGCAGTATTGCAGGATGGTTGAAATAGGGTACTCATGTATACTAGTGTACATTGCGTATCTTTGGACTTTTAACATGAAAACAACATATACGCAAGAAGAAATTGACGAGGTTCGGATAGAATGGGCAGGGTTCGTGGGAACATTTGTGTAG

Coding sequence (CDS)

ATGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTTCAACGTTCAGGAGGGTCAGCGGGTATCGTTAGAGGAGGACGATGTCCGTTGGCTTCACGCCATCTTTCGGGCTAAGCCAGCAGGTGGTCCGGGAGGGGGTGATGGCATCATGCAGTATTGCAGGATGGTTGAAATAGGGTACTCATGTATACTAGTGTACATTGCGTATCTTTGGACTTTTAACATGAAAACAACATATACGCAAGAAGAAATTGACGAGGTTCGGATAGAATGGGCAGGGTTCGTGGGAACATTTGTGTAG

Protein sequence

MWVELYIESVHIVNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPGGGDGIMQYCRMVEIGYSCILVYIAYLWTFNMKTTYTQEEIDEVRIEWAGFVGTFV
Homology
[Close]
BLAST of Spg004922 vs. NCBI nr
Match: KAA0062409.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-06
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 0 

Query: 2   WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPG 61
           W+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPG
Sbjct: 118 WLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPG 177

[Close]
BLAST of Spg004922 vs. NCBI nr
Match: KAA0061222.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-06
Identity = 32/73 (43.84%), Postives = 38/73 (52.05%), Query Frame = 0 

Query: 51  DGIMQYCRMVEIGYSCILVYIAYLWT--------------------FNMKTTYTQEEIDE 104
           + ++ YC MVEIGY CIL YI  L T                    FN K+ Y QEEIDE
Sbjct: 323 EDLLHYCSMVEIGYMCILAYITGLKTWQAKHDLQRYRSTPKWRPVKFNTKSAYRQEEIDE 382

[Close]
BLAST of Spg004922 vs. NCBI nr
Match: TYK06270.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-06
Identity = 32/73 (43.84%), Postives = 38/73 (52.05%), Query Frame = 0 

Query: 51  DGIMQYCRMVEIGYSCILVYIAYLWT--------------------FNMKTTYTQEEIDE 104
           + ++ YC MVEIGY CIL YI  L T                    FN K+ Y QEEIDE
Sbjct: 314 EDLLHYCSMVEIGYMCILAYITGLKTWQAKHDLQRYRSTPKWRPVKFNTKSAYRQEEIDE 373

[Close]
BLAST of Spg004922 vs. NCBI nr
Match: TYK26572.1 (putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-06
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 0 

Query: 2   WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPG 61
           W+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPG
Sbjct: 118 WLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPG 177

[Close]
BLAST of Spg004922 vs. NCBI nr
Match: KAA0058280.1 (uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.0e-05
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 0 

Query: 2   WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPG 51
           W+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPG
Sbjct: 133 WLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPG 192

[Close]
BLAST of Spg004922 vs. ExPASy TrEMBL
Match: A0A5A7V9N3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold154G002110 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 0 

Query: 2   WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPG 61
           W+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPG
Sbjct: 118 WLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPG 177

[Close]
BLAST of Spg004922 vs. ExPASy TrEMBL
Match: A0A5D3DSY7 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold313G001810 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 30/72 (41.67%), Postives = 41/72 (56.94%), Query Frame = 0 

Query: 2   WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPG 61
           W+ELY ESVH+             ++++F+V  G    +  DDV WLHA+FRAK  GGPG
Sbjct: 118 WLELYFESVHVEMFCYFTNQVMSRLHLVFSVLVGSTGIVRGDDVCWLHAVFRAKTVGGPG 177

[Close]
BLAST of Spg004922 vs. ExPASy TrEMBL
Match: A0A5D3C4L5 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00510 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 32/73 (43.84%), Postives = 38/73 (52.05%), Query Frame = 0 

Query: 51  DGIMQYCRMVEIGYSCILVYIAYLWT--------------------FNMKTTYTQEEIDE 104
           + ++ YC MVEIGY CIL YI  L T                    FN K+ Y QEEIDE
Sbjct: 314 EDLLHYCSMVEIGYMCILAYITGLKTWQAKHDLQRYRSTPKWRPVKFNTKSAYRQEEIDE 373

[Close]
BLAST of Spg004922 vs. ExPASy TrEMBL
Match: A0A5A7UZ87 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00530 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.7e-06
Identity = 32/73 (43.84%), Postives = 38/73 (52.05%), Query Frame = 0 

Query: 51  DGIMQYCRMVEIGYSCILVYIAYLWT--------------------FNMKTTYTQEEIDE 104
           + ++ YC MVEIGY CIL YI  L T                    FN K+ Y QEEIDE
Sbjct: 323 EDLLHYCSMVEIGYMCILAYITGLKTWQAKHDLQRYRSTPKWRPVKFNTKSAYRQEEIDE 382

[Close]
BLAST of Spg004922 vs. ExPASy TrEMBL
Match: A0A5A7UT17 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006090 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 4.9e-06
Identity = 29/62 (46.77%), Postives = 37/62 (59.68%), Query Frame = 0 

Query: 2   WVELYIESVHI-------------VNVLFNVQEGQRVSLEEDDVRWLHAIFRAKPAGGPG 51
           W+ELY ESVH+             ++++FNV  G    +  DDV WLHA+FRAK  GGPG
Sbjct: 133 WLELYFESVHVEMFCSFTNQVMSELHLVFNVSVGSTGIVRGDDVCWLHAVFRAKTVGGPG 192

The following BLAST results are available for this feature:
BLAST of Spg004922 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062409.17.7e-0641.67reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0061222.17.7e-0643.84transposase [Cucumis melo var. makuwa][more]
TYK06270.17.7e-0643.84transposase [Cucumis melo var. makuwa][more]
TYK26572.17.7e-0641.67putative Retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0058280.11.0e-0546.77uncharacterized protein E6C27_scaffold274G006090 [Cucumis melo var. makuwa][more]
BLAST of Spg004922 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg004922 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V9N33.7e-0641.67Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3DSY73.7e-0641.67Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5D3C4L53.7e-0643.84Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold157G00510 PE... [more]
A0A5A7UZ873.7e-0643.84Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold455G00530 PE... [more]
A0A5A7UT174.9e-0646.77CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
BLAST of Spg004922 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004922.1Spg004922.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0043170 macromolecule metabolic process
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0044238 primary metabolic process
molecular_function GO:0016787 hydrolase activity