Spg004921 (gene) Sponge gourd (cylindrica) v1

Overview
NameSpg004921
Typegene
OrganismLuffa cylindrica (Sponge gourd (cylindrica) v1)
DescriptionCCHC-type domain-containing protein
Locationscaffold9: 22833379 .. 22835307 (-)
RNA-Seq ExpressionSpg004921
SyntenySpg004921
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAGAAAAGAAAAGAAAAGAAAAGGAAAAGGAAAAGGGAAAAAGGAAAAAAAAAAAAGAAAAAAAGGAAAGGAAAAGAAAGCAAGTGGAAATGGACAGCAATGCCCCACCACCGCCTAAGCTGATCACCAACCTATTTTTAGTCATTTTTAGCCCCATTTCCTCATCATTTTTCATCCAACTTTCAGAGCACTTTAAGGAGAGAGTGAAGGAAGAAGAAGAAGAAGAAGAATTTCATGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTAAGCTACACCGAAGGGAATAAGAGGTGAGATTTGATTTTCTTGAAAGTTAGTTCACTTTCTAGCAAATTTCATGAAGGAAGCTTGAGCTAAATCGTATGAGAAGTTAATGGATTTTTGAATGGAAAACAGAGCACAGGATTTTCGAGCAAACCAGGAGGATCTCTGGTGTTCTCTGGTGTTTTGAGCATTCTGGGGTGTACAAGTCGAATCTGAAGCTCTATTTGGTATTTTTGGAAAGATTATTCAATTTCATACAATTTTCATGAAGATTTCGTGAGCCAAAAATAACTTTAAGTAGGGTTAATTTCAGGAGTTAGATAAAGGGTAGCAGGGAACCTCGAATCTATGTTGTCTGTGTTCGGGGCAATTCTGGGCAAATCGGTTGGGAATCTCATTTTTATTTCTTCATGTAAGTTGTAGAGTGTTCGAAAATGAAGAGTTTGATGTGTATTTCATTAATTTTGGTTCAGTATTGAGGAAGTTATGGGTGTTGGAAGTTAGGGTATAGAATCTGGAAAATCTGGAAAGTAGAATGTGAATGTGATTCTTAATCCAATTGTTTAAAAATTCATGAGCATGGAAAGACAAAGCTATCTATGGTTCTAATGCTCGGTTTTGGTTATTTGACAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTGAGTGACAAAATGAATTTCGAAAATGGTTTCCAACGGTTGTTCATGTTTAGATGTTTACATGCTTTTCTATGAATGATACATGGTTTTTATGAACAGTTTCAAGCATGAGTTTTGAGCTTAGATTTTCTAACGAGGTTTATATACGATCACGTGGCTAATGACTTTATGAAAAGTAGTTGAAACGATAGCTTTTAAAGTAAAGTATGGATTAGCAAGTACTTTTAAACGATTTCCAGTTTTTCACGAGCAAACTGAGTAAGCTTAAGTTTTACGAAAGATAACGATAAGCAGGCATGTTTTAATGTTTTCATGTGATTTTCTGAGATTTCTATTGACTACATGACTGAGATATTGAGCCTGAGGCTATATGGTACCGTGTGCACACAGGTTATATTCCGTTGTTGACGTTGAGTGTACTCCGTGACAACGATGCTGTCGTGAGTGCTGGGCGGACCCCACTACGAAAAAGACGATGGGAGTGCTGGGCGGGCCCCACTACATCGTAGGACTAGTAAACGTTGGTTGTACTGGGCGTGCCCTACACAACGTAAATCGGTCATGCTAGTTAAAACGTTTGATGTACTTAATATGCCTTGCTAGATTTTTAATGACGAACTTACGAGATGTTTTGGAAAGCATTTATTATTACACGTTTATGTTAAACGCTTTGATTGAGCATATTTATACGTTTAAAGGATTATCACGTGTTTTGACTTCCGGATTTAGAATTTTAAAGTTAGTCACTCACTGGGCTTCGTAGCTCATTCTTTCAAAAAGTTTTTCCACTTTCAGGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

mRNA sequence

ATGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTAAGCTACACCGAAGGGAATAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

Coding sequence (CDS)

ATGGTTTTGAGGTTGAAGAAGATAGGAAAAGCTCATGCAAAGCCAGCCATAGCAGAATCTGTGTTCAACCTGTCAACCTCTGGTTTTTTATTCGGTTTAAGCTACACCGAAGGGAATAAGAGGCCAAGAGGAAATAGGTCGAGTCTACAAACCGGGGAACTAGATAAGACAGTAGAGATCGAGCTCCCGGTGCCTGATACACTGCCAACGTCTGCTGAAAGCTCCAGATCAAGCTCCAGTACGTGGGTGGAGTTGTATATTGAGTCTGTTCATATTGTAAATGTTTTGTAA

Protein sequence

MVLRLKKIGKAHAKPAIAESVFNLSTSGFLFGLSYTEGNKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHIVNVL
Homology
[Close]
BLAST of Spg004921 vs. NCBI nr
Match: KAA0052218.1 (uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK01785.1 uncharacterized protein E5676_scaffold113G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 1.3e-18
Identity = 60/107 (56.07%), Postives = 68/107 (63.55%), Query Frame = 0 

Query: 8   IGKAHAKPAIAESVFNLSTSGFLFGLSYTEGNK----------------------RPRGN 67
           I K +AKPAIAES  N      LFGLSY E  +                       PRGN
Sbjct: 23  IEKVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGN 82

Query: 68  RSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI 93
           R +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESVH+
Sbjct: 83  RPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV 129

[Close]
BLAST of Spg004921 vs. NCBI nr
Match: KAA0040420.1 (NBS-LRR type resistance protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 1.7e-18
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 30 LFGLSYTEGNKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIES 89
          LF LSY EG KRPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTW+ELY ES
Sbjct: 19 LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFES 78

Query: 90 VHI 93
          VH+
Sbjct: 79 VHV 81

[Close]
BLAST of Spg004921 vs. NCBI nr
Match: KAA0025357.1 (hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa] >TYK23443.1 hypothetical protein E5676_scaffold605G00460 [Cucumis melo var. makuwa])

HSP 1 Score: 99.0 bits (245), Expect = 2.4e-17
Identity = 52/80 (65.00%), Postives = 58/80 (72.50%), Query Frame = 0 

Query: 30 LFGLSYTEGNKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 89
          LFGLSY EG KRP+GNR SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19 LFGLSYPEGTKRPKGNRLSLQTGELDKTVIFLLSTLSVLRDNDVVVEIELPVPDTLPTSA 78

Query: 90 ESSRSSSSTWVELYIESVHI 93
          ES RS+S+TW+ELY ES+H+
Sbjct: 79 ESFRSNSNTWLELYFESIHV 98

[Close]
BLAST of Spg004921 vs. NCBI nr
Match: KAA0051980.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 3.4e-16
Identity = 52/80 (65.00%), Postives = 56/80 (70.00%), Query Frame = 0 

Query: 30 LFGLSYTEGNKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 89
          LFGL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19 LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 90 ESSRSSSSTWVELYIESVHI 93
          ESS S+SSTW+EL  E VH+
Sbjct: 79 ESSGSNSSTWLELNFEFVHV 98

[Close]
BLAST of Spg004921 vs. NCBI nr
Match: KAA0053276.1 (uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-14
Identity = 55/118 (46.61%), Postives = 64/118 (54.24%), Query Frame = 0 

Query: 3   LRLKKIGKAHAKPAIAESVFNLSTSGFLFGLSYTEGNKRPRGNRSSLQTGELDKT----- 62
           LRLKK+ K      +      ++    L GLSY EG  RPRGNR SLQTG+LDKT     
Sbjct: 187 LRLKKMKKFMQSQTLQNLGATINLWFVLIGLSYPEGTMRPRGNRPSLQTGKLDKTVIFQL 246

Query: 63  -----------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI 93
                                  VEIELP+PDTLPT AES  S+SSTW+ELY ESVH+
Sbjct: 247 STLSVLRDNDAVLILFKMFPTFQVEIELPMPDTLPTFAESFESNSSTWLELYFESVHV 304

[Close]
BLAST of Spg004921 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 6.1e-19
Identity = 60/107 (56.07%), Postives = 68/107 (63.55%), Query Frame = 0 

Query: 8   IGKAHAKPAIAESVFNLSTSGFLFGLSYTEGNK----------------------RPRGN 67
           I K +AKPAIAES  N      LFGLSY E  +                       PRGN
Sbjct: 23  IEKVNAKPAIAESGCNCQPLIVLFGLSYLEELRGESTRFLSKSGGFLVFSDALSILPRGN 82

Query: 68  RSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI 93
           R +L TG+LDKTVEIELPVPDTLPTSAESS+S+SSTW+ELY ESVH+
Sbjct: 83  RPNLHTGKLDKTVEIELPVPDTLPTSAESSKSNSSTWLELYFESVHV 129

[Close]
BLAST of Spg004921 vs. ExPASy TrEMBL
Match: A0A5A7TAS6 (NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00450 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 8.0e-19
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 0 

Query: 30 LFGLSYTEGNKRPRGNRSSLQTGELDKTVEIELPVPDTLPTSAESSRSSSSTWVELYIES 89
          LF LSY EG KRPRGNR SLQTG+LDKTVEIELP+PDTLPT AES  S+SSTW+ELY ES
Sbjct: 19 LFSLSYPEGTKRPRGNRPSLQTGKLDKTVEIELPMPDTLPTFAESFGSNSSTWLELYFES 78

Query: 90 VHI 93
          VH+
Sbjct: 79 VHV 81

[Close]
BLAST of Spg004921 vs. ExPASy TrEMBL
Match: A0A5D3DIM8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold605G00460 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.2e-17
Identity = 52/80 (65.00%), Postives = 58/80 (72.50%), Query Frame = 0 

Query: 30 LFGLSYTEGNKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 89
          LFGLSY EG KRP+GNR SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19 LFGLSYPEGTKRPKGNRLSLQTGELDKTVIFLLSTLSVLRDNDVVVEIELPVPDTLPTSA 78

Query: 90 ESSRSSSSTWVELYIESVHI 93
          ES RS+S+TW+ELY ES+H+
Sbjct: 79 ESFRSNSNTWLELYFESIHV 98

[Close]
BLAST of Spg004921 vs. ExPASy TrEMBL
Match: A0A5A7U9X4 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G002130 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.7e-16
Identity = 52/80 (65.00%), Postives = 56/80 (70.00%), Query Frame = 0 

Query: 30 LFGLSYTEGNKRPRGNRSSLQTGELDKT-----------------VEIELPVPDTLPTSA 89
          LFGL Y EG KRPRGNR+SLQTGELDKT                 VEIELPVPDTLPTSA
Sbjct: 19 LFGLGYPEGTKRPRGNRTSLQTGELDKTVIFSLSTLSVLRDNDAVVEIELPVPDTLPTSA 78

Query: 90 ESSRSSSSTWVELYIESVHI 93
          ESS S+SSTW+EL  E VH+
Sbjct: 79 ESSGSNSSTWLELNFEFVHV 98

[Close]
BLAST of Spg004921 vs. ExPASy TrEMBL
Match: A0A5A7UGD0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold102G00750 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 5.4e-15
Identity = 55/118 (46.61%), Postives = 64/118 (54.24%), Query Frame = 0 

Query: 3   LRLKKIGKAHAKPAIAESVFNLSTSGFLFGLSYTEGNKRPRGNRSSLQTGELDKT----- 62
           LRLKK+ K      +      ++    L GLSY EG  RPRGNR SLQTG+LDKT     
Sbjct: 187 LRLKKMKKFMQSQTLQNLGATINLWFVLIGLSYPEGTMRPRGNRPSLQTGKLDKTVIFQL 246

Query: 63  -----------------------VEIELPVPDTLPTSAESSRSSSSTWVELYIESVHI 93
                                  VEIELP+PDTLPT AES  S+SSTW+ELY ESVH+
Sbjct: 247 STLSVLRDNDAVLILFKMFPTFQVEIELPMPDTLPTFAESFESNSSTWLELYFESVHV 304

The following BLAST results are available for this feature:
BLAST of Spg004921 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0052218.11.3e-1856.07uncharacterized protein E6C27_scaffold207G00290 [Cucumis melo var. makuwa] >TYK0... [more]
KAA0040420.11.7e-1879.37NBS-LRR type resistance protein [Cucumis melo var. makuwa][more]
KAA0025357.12.4e-1765.00hypothetical protein E6C27_scaffold1204G00410 [Cucumis melo var. makuwa] >TYK234... [more]
KAA0051980.13.4e-1665.00DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa] >TYK04577.1 D... [more]
KAA0053276.11.1e-1446.61uncharacterized protein E6C27_scaffold102G00750 [Cucumis melo var. makuwa][more]
BLAST of Spg004921 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Spg004921 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UAH66.1e-1956.07CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7TAS68.0e-1979.37NBS-LRR type resistance protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3DIM81.2e-1765.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U9X41.7e-1665.00DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5A7UGD05.4e-1546.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Spg004921 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spg004921.1Spg004921.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0090304 nucleic acid metabolic process
molecular_function GO:0016740 transferase activity